Wall clock time and date at job start Tue Mar 31 2020 11:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99949 * 2 1 4 4 C 1.46899 * 110.99804 * 123.95202 * 2 1 3 5 5 C 1.50695 * 109.47203 * 66.04903 * 4 2 1 6 6 C 1.38331 * 119.86607 * 90.00063 * 5 4 2 7 7 C 1.37991 * 120.13866 * 179.97438 * 6 5 4 8 8 C 1.39467 * 119.85841 * 0.02562 * 7 6 5 9 9 C 1.48056 * 120.13362 * 179.97438 * 8 7 6 10 10 N 1.38467 * 119.99899 * 359.97438 * 9 8 7 11 11 N 1.30065 * 120.00143 * 179.97438 * 9 8 7 12 12 O 1.41599 * 119.99667 * 182.76323 * 11 9 8 13 13 C 1.42903 * 113.99738 * 184.92325 * 12 11 9 14 14 C 1.52999 * 109.47026 * 175.88087 * 13 12 11 15 15 C 1.50697 * 115.54859 * 306.64665 * 14 13 12 16 16 H 1.08003 * 120.00030 * 144.23079 * 15 14 13 17 17 C 1.37879 * 120.00432 * 324.22922 * 15 14 13 18 18 N 1.31512 * 119.99605 * 347.70987 * 17 15 14 19 19 Si 1.86794 * 120.00230 * 167.70392 * 17 15 14 20 20 H 1.48502 * 109.47430 * 90.00178 * 19 17 15 21 21 H 1.48499 * 109.47429 * 210.00632 * 19 17 15 22 22 H 1.48510 * 109.47273 * 330.00313 * 19 17 15 23 23 C 1.52999 * 117.49712 * 160.98532 * 14 13 12 24 24 C 1.52995 * 117.49847 * 92.32283 * 14 13 12 25 25 C 1.39473 * 119.73549 * 0.25054 * 8 7 6 26 26 C 1.37981 * 119.85946 * 359.49362 * 25 8 7 27 27 H 1.08999 * 109.47544 * 296.04679 * 1 2 3 28 28 H 1.08999 * 109.47027 * 56.04623 * 1 2 3 29 29 H 1.08995 * 109.46922 * 176.04937 * 1 2 3 30 30 H 1.08993 * 109.47157 * 183.95152 * 3 2 1 31 31 H 1.09005 * 109.46768 * 303.95578 * 3 2 1 32 32 H 1.09003 * 109.47524 * 63.94972 * 3 2 1 33 33 H 1.09004 * 109.47391 * 306.04289 * 4 2 1 34 34 H 1.08998 * 109.46855 * 186.04824 * 4 2 1 35 35 H 1.08001 * 119.93257 * 359.97438 * 6 5 4 36 36 H 1.08002 * 120.07159 * 179.97438 * 7 6 5 37 37 H 0.97009 * 119.99758 * 354.07195 * 10 9 8 38 38 H 0.96998 * 120.00515 * 174.07499 * 10 9 8 39 39 H 1.09001 * 109.47341 * 295.88250 * 13 12 11 40 40 H 1.09003 * 109.46952 * 55.88069 * 13 12 11 41 41 H 0.97003 * 119.99837 * 185.04568 * 18 17 15 42 42 H 1.09004 * 117.49926 * 359.97438 * 23 14 13 43 43 H 1.08996 * 117.50403 * 145.01979 * 23 14 13 44 44 H 1.09008 * 117.49837 * 214.97340 * 24 14 13 45 45 H 1.08997 * 117.50168 * 359.97438 * 24 14 13 46 46 H 1.07998 * 120.07161 * 179.72790 * 25 8 7 47 47 H 1.08002 * 119.93510 * 180.23096 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6370 -2.2203 0.9729 6 6 2.4966 -3.0697 0.2998 7 6 2.1742 -4.4026 0.1461 8 6 0.9785 -4.8927 0.6708 9 6 0.6263 -6.3216 0.5090 10 7 1.4845 -7.1742 -0.1648 11 7 -0.4892 -6.7761 0.9997 12 8 -0.7989 -8.1539 0.8962 13 6 -2.1006 -8.4948 1.3772 14 6 -2.3652 -9.9802 1.1235 15 6 -2.1669 -10.4424 -0.2970 16 1 -1.7653 -11.4254 -0.4940 17 6 -2.4983 -9.6104 -1.3454 18 7 -3.2043 -8.5232 -1.1241 19 14 -1.9442 -10.0273 -3.0799 20 1 -2.9776 -10.8632 -3.7422 21 1 -1.7512 -8.7740 -3.8527 22 1 -0.6631 -10.7764 -3.0237 23 6 -3.4769 -10.6484 1.9351 24 6 -2.0103 -10.9620 2.2420 25 6 0.1132 -4.0302 1.3434 26 6 0.4492 -2.7005 1.4951 27 1 -0.3634 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0827 1.3433 -0.0708 31 1 1.5897 1.9163 -0.8525 32 1 1.7043 1.8724 0.9233 33 1 1.5611 -0.3872 2.0629 34 1 3.0797 -0.6610 1.1757 35 1 3.4220 -2.6889 -0.1064 36 1 2.8460 -5.0647 -0.3799 37 1 2.2733 -6.8203 -0.6047 38 1 1.2969 -8.1254 -0.1970 39 1 -2.1571 -8.2931 2.4469 40 1 -2.8486 -7.8981 0.8550 41 1 -3.4999 -7.9768 -1.8691 42 1 -4.0195 -10.0298 2.6500 43 1 -4.0645 -11.4226 1.4418 44 1 -1.6338 -11.9425 1.9503 45 1 -1.5880 -10.5498 3.1583 46 1 -0.8162 -4.4030 1.7480 47 1 -0.2182 -2.0323 2.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853673413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:40 Heat of formation + Delta-G solvation = 60.400720 kcal Electronic energy + Delta-G solvation = -25982.111522 eV Core-core repulsion = 22360.103725 eV Total energy + Delta-G solvation = -3622.007797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69541 -38.97621 -38.44175 -37.39796 -35.77490 -34.14967 -32.63975 -32.10078 -31.01443 -28.45678 -28.12835 -27.61099 -26.61050 -24.08160 -23.40385 -22.97278 -22.17037 -21.02122 -20.80483 -18.65194 -18.27852 -18.04135 -16.77174 -16.73725 -16.39727 -16.37102 -16.19499 -15.94696 -15.62910 -15.34765 -15.07036 -14.84788 -14.50459 -14.30321 -14.11466 -13.86250 -13.48549 -13.18970 -13.13750 -12.96451 -12.86979 -12.71691 -12.63590 -12.41952 -12.34544 -12.12793 -12.03697 -11.91903 -11.42357 -11.18752 -11.15380 -10.68083 -10.57617 -9.98582 -9.88629 -9.82819 -9.27114 -8.87069 -8.02836 -6.13260 -0.06505 0.47714 1.36508 1.39587 1.49026 1.81839 2.10388 2.40930 2.79351 2.83491 3.05731 3.28359 3.62565 3.78414 3.88447 4.05940 4.16828 4.26907 4.33136 4.39405 4.46821 4.47792 4.49038 4.60787 4.67269 4.69547 4.77563 4.81490 4.85067 4.91732 4.93933 5.07220 5.07480 5.07835 5.12343 5.24279 5.39409 5.45896 5.50136 5.55529 5.60483 5.83386 5.88342 5.96836 6.05601 6.10144 6.12621 6.39360 6.81217 6.92529 7.28175 7.47292 8.95278 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.002797 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.792598 B =10009.178060 C =10441.484091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.556 5.556 3 C 0.024 3.976 4 C 0.094 3.906 5 C -0.065 4.065 6 C -0.097 4.097 7 C -0.093 4.093 8 C -0.059 4.059 9 C 0.390 3.610 10 N -0.867 5.867 11 N -0.450 5.450 12 O -0.231 6.231 13 C 0.140 3.860 14 C 0.016 3.984 15 C -0.504 4.504 16 H 0.052 0.948 17 C 0.036 3.964 18 N -0.895 5.895 19 Si 0.949 3.051 20 H -0.274 1.274 21 H -0.290 1.290 22 H -0.267 1.267 23 C -0.187 4.187 24 C -0.190 4.190 25 C -0.089 4.089 26 C -0.115 4.115 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.406 0.594 38 H 0.403 0.597 39 H 0.006 0.994 40 H 0.063 0.937 41 H 0.256 0.744 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.115 0.885 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.993 19.641 3.248 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.281 5.281 3 C -0.123 4.123 4 C -0.033 4.033 5 C -0.066 4.066 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.062 4.062 9 C 0.112 3.888 10 N -0.422 5.422 11 N -0.216 5.216 12 O -0.243 6.243 13 C 0.063 3.937 14 C 0.015 3.985 15 C -0.541 4.541 16 H 0.070 0.930 17 C -0.165 4.165 18 N -0.532 5.532 19 Si 0.775 3.225 20 H -0.200 1.200 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.225 4.225 24 C -0.227 4.227 25 C -0.109 4.109 26 C -0.133 4.133 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.174 0.826 36 H 0.163 0.837 37 H 0.237 0.763 38 H 0.232 0.768 39 H 0.024 0.976 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.133 0.867 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.372 19.730 3.160 24.043 hybrid contribution -0.093 -0.826 -0.613 1.033 sum 13.279 18.904 2.547 23.242 Atomic orbital electron populations 1.22474 0.87349 1.02213 1.00975 1.61986 1.08348 1.14847 1.42876 1.22440 1.01379 0.87488 1.01023 1.21131 1.01651 0.88447 0.92047 1.20081 0.93934 0.96094 0.96481 1.21158 1.00696 0.91762 0.97910 1.21306 0.94672 0.96863 0.98496 1.18232 0.97316 0.87515 1.03088 1.21592 0.86282 0.91324 0.89575 1.42822 1.28947 1.10127 1.60333 1.76923 1.16889 0.98230 1.29590 1.89641 1.35119 1.14577 1.84919 1.21624 0.83969 0.95425 0.92718 1.19042 0.98832 0.89025 0.91635 1.20581 1.43246 1.00600 0.89698 0.93028 1.25549 0.94284 0.94452 1.02227 1.70001 1.35602 1.16040 1.31541 0.85700 0.79199 0.77239 0.80364 1.19983 1.21563 1.19200 1.22936 0.91158 1.04209 1.04221 1.22935 0.98217 1.01140 1.00447 1.21238 0.98793 0.93725 0.97176 1.21127 0.97245 0.94268 1.00674 0.94806 0.91006 0.92206 0.90201 0.90969 0.95064 0.93048 0.87928 0.82646 0.83690 0.76299 0.76761 0.97563 0.91927 0.93453 0.90245 0.90170 0.89964 0.89856 0.86682 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.13 127.69 1.17 1.45 16 2 N -0.56 -8.33 5.01 -953.49 -4.78 -13.11 16 3 C 0.02 0.25 9.57 127.69 1.22 1.47 16 4 C 0.09 1.28 5.11 85.56 0.44 1.71 16 5 C -0.06 -1.18 4.89 -19.82 -0.10 -1.28 16 6 C -0.10 -1.73 9.68 22.23 0.22 -1.51 16 7 C -0.09 -2.05 9.55 22.51 0.22 -1.83 16 8 C -0.06 -1.77 5.87 -20.08 -0.12 -1.89 16 9 C 0.39 14.81 7.94 136.32 1.08 15.89 16 10 N -0.87 -28.31 8.93 -50.86 -0.45 -28.77 16 11 N -0.45 -21.09 10.52 -50.68 -0.53 -21.62 16 12 O -0.23 -12.23 9.99 -38.78 -0.39 -12.62 16 13 C 0.14 7.54 5.49 71.98 0.40 7.93 16 14 C 0.02 0.87 2.10 -52.93 -0.11 0.76 16 15 C -0.50 -28.86 8.74 25.60 0.22 -28.64 16 16 H 0.05 2.93 7.84 -2.91 -0.02 2.91 16 17 C 0.04 2.05 5.16 84.66 0.44 2.49 16 18 N -0.89 -53.09 10.87 21.45 0.23 -52.86 16 19 Si 0.95 45.22 29.56 68.60 2.03 47.24 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 23 C -0.19 -8.78 9.96 30.62 0.30 -8.47 16 24 C -0.19 -8.63 9.92 30.62 0.30 -8.32 16 25 C -0.09 -2.60 9.58 22.51 0.22 -2.39 16 26 C -0.11 -2.52 7.94 22.23 0.18 -2.34 16 27 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 29 H 0.06 1.15 6.16 -2.39 -0.01 1.13 16 30 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 31 H 0.07 0.71 8.12 -2.38 -0.02 0.69 16 32 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.05 0.64 8.06 -2.39 -0.02 0.62 16 34 H 0.10 1.03 8.00 -2.39 -0.02 1.01 16 35 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.15 2.45 6.43 -2.91 -0.02 2.43 16 37 H 0.41 9.57 6.98 -92.70 -0.65 8.93 16 38 H 0.40 14.90 7.95 -92.71 -0.74 14.16 16 39 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 40 H 0.06 3.75 6.10 -2.39 -0.01 3.73 16 41 H 0.26 14.71 8.32 -92.71 -0.77 13.94 16 42 H 0.08 3.45 8.14 -2.38 -0.02 3.43 16 43 H 0.08 3.73 8.14 -2.39 -0.02 3.71 16 44 H 0.08 3.58 8.14 -2.38 -0.02 3.56 16 45 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 46 H 0.12 3.84 7.56 -2.91 -0.02 3.82 16 47 H 0.14 2.49 8.02 -2.91 -0.02 2.47 16 Total: -1.00 -70.60 387.63 1.77 -68.82 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -0.41 Total: 37.88 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 6.07 Total: -24.98 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -5.53 Total: -116.36 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.39 Total: -12.62 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.60 1.77 -68.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853673413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.225 kcal (2) G-P(sol) polarization free energy of solvation -70.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds