Wall clock time and date at job start Tue Mar 31 2020 11:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46504 * 119.99908 * 2 1 4 4 C 1.39920 * 119.99786 * 180.02562 * 2 1 3 5 5 C 1.38876 * 120.00864 * 359.97438 * 4 2 1 6 6 C 1.38072 * 119.99761 * 179.97438 * 5 4 2 7 7 C 1.38839 * 120.00091 * 359.97438 * 6 5 4 8 8 N 1.40198 * 119.98854 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99727 * 213.30837 * 8 7 6 10 10 O 1.21593 * 119.99938 * 5.32912 * 9 8 7 11 11 N 1.34778 * 120.00129 * 185.59575 * 9 8 7 12 12 C 1.46927 * 120.63201 * 174.46863 * 11 9 8 13 13 C 1.53187 * 108.77509 * 126.37248 * 12 11 9 14 14 C 1.53040 * 109.31305 * 54.63286 * 13 12 11 15 15 C 1.53032 * 109.53881 * 298.63391 * 14 13 12 16 16 H 1.08995 * 109.50099 * 301.37962 * 15 14 13 17 17 C 1.50709 * 109.49755 * 181.31863 * 15 14 13 18 18 H 1.07995 * 119.99755 * 359.97438 * 17 15 14 19 19 C 1.37871 * 119.99965 * 180.02562 * 17 15 14 20 20 N 1.31517 * 120.00426 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99994 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47366 * 59.99839 * 21 19 17 23 23 H 1.48502 * 109.47324 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47159 * 300.00199 * 21 19 17 25 25 C 1.46928 * 120.62738 * 354.18969 * 11 9 8 26 26 C 1.38829 * 120.01348 * 0.27609 * 7 6 5 27 27 C 1.38074 * 120.00319 * 359.45060 * 26 7 6 28 28 H 1.09000 * 109.46648 * 270.00028 * 1 2 3 29 29 H 1.08998 * 109.47318 * 29.99206 * 1 2 3 30 30 H 1.09003 * 109.47043 * 149.99651 * 1 2 3 31 31 H 1.08994 * 109.46993 * 270.00182 * 3 2 1 32 32 H 1.09001 * 109.46812 * 30.00076 * 3 2 1 33 33 H 1.08996 * 109.46508 * 150.00522 * 3 2 1 34 34 H 1.08000 * 120.00110 * 359.95642 * 5 4 2 35 35 H 1.07998 * 119.99485 * 180.02562 * 6 5 4 36 36 H 0.96998 * 120.00587 * 33.31862 * 8 7 6 37 37 H 1.09003 * 109.58440 * 246.15978 * 12 11 9 38 38 H 1.08999 * 109.58772 * 6.43684 * 12 11 9 39 39 H 1.09000 * 109.50038 * 174.58817 * 13 12 11 40 40 H 1.08998 * 109.49676 * 294.68188 * 13 12 11 41 41 H 1.08999 * 109.45896 * 58.66247 * 14 13 12 42 42 H 1.09002 * 109.45920 * 178.61540 * 14 13 12 43 43 H 0.96996 * 120.00114 * 179.97438 * 20 19 17 44 44 H 1.08992 * 109.58845 * 353.41773 * 25 11 9 45 45 H 1.09007 * 109.58222 * 113.84544 * 25 11 9 46 46 H 1.08000 * 119.99921 * 179.72612 * 26 7 6 47 47 H 1.08002 * 120.00681 * 180.24908 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1646 -1.2118 -0.0005 5 6 1.4704 -2.4145 -0.0005 6 6 2.1609 -3.6102 -0.0016 7 6 3.5493 -3.6100 -0.0032 8 7 4.2502 -4.8242 -0.0049 9 6 5.4327 -4.9205 0.6347 10 8 5.8454 -3.9856 1.2936 11 7 6.1602 -6.0511 0.5395 12 6 7.5036 -6.1287 1.1294 13 6 7.5663 -7.3480 2.0545 14 6 7.1490 -8.5970 1.2748 15 6 5.7084 -8.4365 0.7841 16 1 5.0486 -8.2802 1.6375 17 6 5.2876 -9.6802 0.0442 18 1 5.9785 -10.5029 -0.0657 19 6 4.0209 -9.7671 -0.4933 20 7 3.1797 -8.7650 -0.3599 21 14 3.4995 -11.3083 -1.4110 22 1 3.5843 -12.4788 -0.5011 23 1 2.1015 -11.1521 -1.8868 24 1 4.3981 -11.5196 -2.5743 25 6 5.6224 -7.2314 -0.1507 26 6 4.2436 -2.4078 0.0020 27 6 3.5534 -1.2119 -0.0026 28 1 -0.3632 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3792 1.5834 -1.0276 32 1 1.6084 2.0284 0.5139 33 1 3.1500 1.1383 0.5137 34 1 0.3904 -2.4147 0.0006 35 1 1.6210 -4.5455 -0.0020 36 1 3.8843 -5.5949 -0.4663 37 1 8.2451 -6.2326 0.3371 38 1 7.7046 -5.2227 1.7011 39 1 8.5842 -7.4727 2.4237 40 1 6.8891 -7.2013 2.8960 41 1 7.8115 -8.7291 0.4194 42 1 7.2163 -9.4698 1.9242 43 1 2.2887 -8.8261 -0.7384 44 1 4.5816 -7.0539 -0.4211 45 1 6.2074 -7.4271 -1.0494 46 1 5.3236 -2.4079 0.0052 47 1 4.0935 -0.2766 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854165453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:46 Heat of formation + Delta-G solvation = 13.210765 kcal Electronic energy + Delta-G solvation = -26816.652445 eV Core-core repulsion = 23192.598338 eV Total energy + Delta-G solvation = -3624.054107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24605 -39.06994 -37.17838 -35.98230 -33.75055 -33.21964 -31.82628 -30.93949 -29.85887 -28.52628 -28.17879 -25.20480 -24.91855 -23.91798 -22.34579 -21.88094 -20.78668 -19.90019 -18.72932 -17.85363 -17.19334 -16.35661 -16.30841 -15.59900 -15.08748 -14.81193 -14.75792 -14.59287 -14.14537 -13.79497 -13.57307 -13.40939 -13.23562 -13.00239 -12.77934 -12.53424 -12.43902 -12.29174 -12.19482 -12.02949 -11.93798 -11.83788 -11.06072 -10.97276 -10.76236 -10.58186 -10.41965 -10.26995 -10.25783 -9.98663 -9.62253 -9.17860 -9.02360 -8.75050 -8.60550 -8.56181 -7.77708 -6.77924 -6.18765 -4.23144 1.71683 1.84626 3.14126 3.23245 3.29261 3.30678 3.33067 3.70732 4.27225 4.30495 4.55278 4.91206 4.94535 5.12114 5.16402 5.23525 5.27759 5.48560 5.55667 5.57225 5.58072 5.64063 5.73108 5.76579 5.80293 5.85328 6.11627 6.27409 6.30264 6.33794 6.39307 6.43207 6.47700 6.63515 6.75739 6.81651 6.88184 6.90742 6.94433 7.20892 7.31983 7.33090 7.40898 7.64384 7.66672 7.71613 7.87155 8.22812 8.56395 8.81115 9.17416 9.42938 10.88967 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.003401 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.615793 B = 8231.323646 C = 9867.659468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.645 5.645 3 C 0.097 3.903 4 C 0.184 3.816 5 C -0.175 4.175 6 C -0.102 4.102 7 C 0.128 3.872 8 N -0.684 5.684 9 C 0.707 3.293 10 O -0.603 6.603 11 N -0.621 5.621 12 C 0.131 3.869 13 C -0.134 4.134 14 C -0.110 4.110 15 C 0.037 3.963 16 H 0.031 0.969 17 C -0.513 4.513 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.111 3.889 26 C -0.076 4.076 27 C -0.177 4.177 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.415 0.585 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.264 0.736 44 H 0.104 0.896 45 H 0.047 0.953 46 H 0.135 0.865 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 14.613 -0.974 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.360 5.360 3 C -0.046 4.046 4 C 0.084 3.916 5 C -0.198 4.198 6 C -0.124 4.124 7 C 0.031 3.969 8 N -0.334 5.334 9 C 0.409 3.591 10 O -0.483 6.483 11 N -0.356 5.356 12 C 0.008 3.992 13 C -0.172 4.172 14 C -0.148 4.148 15 C 0.018 3.982 16 H 0.049 0.951 17 C -0.551 4.551 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.010 4.010 26 C -0.097 4.097 27 C -0.200 4.200 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.256 0.744 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.066 0.934 46 H 0.152 0.848 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.079 15.404 -0.576 15.554 hybrid contribution -0.651 -1.356 -0.700 1.659 sum -2.730 14.048 -1.276 14.367 Atomic orbital electron populations 1.21548 0.80016 1.02260 1.00779 1.46205 1.04549 1.03010 1.82216 1.21544 0.97268 0.85064 1.00716 1.17759 0.91135 0.85438 0.97237 1.20372 0.99142 0.90447 1.09855 1.20718 0.92257 0.98158 1.01248 1.17405 0.90406 0.85303 1.03776 1.42924 1.21333 1.12923 1.56234 1.15816 0.80362 0.83242 0.79641 1.90817 1.72082 1.39222 1.46191 1.47665 1.16789 1.12702 1.58461 1.21363 0.82627 0.99013 0.96210 1.21957 1.00491 0.96120 0.98678 1.21603 0.99310 0.95359 0.98487 1.18900 0.91187 0.92957 0.95154 0.95106 1.21128 0.98302 1.00863 1.34813 0.92261 1.24987 0.96380 0.96524 0.95997 1.69778 1.06893 1.31117 1.45727 0.86582 0.77571 0.83336 0.80094 1.20278 1.21228 1.20224 1.22151 0.99874 0.83966 0.95047 1.20954 1.00660 0.90243 0.97884 1.20498 0.91756 0.98046 1.09665 0.93829 0.92072 0.91380 0.93849 0.92064 0.91387 0.86057 0.85521 0.74440 0.92484 0.89991 0.92196 0.92181 0.93139 0.93011 0.92614 0.87786 0.93436 0.84762 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 10.19 59.85 0.61 1.45 16 2 N -0.64 -7.24 3.42 -187.48 -0.64 -7.88 16 3 C 0.10 0.85 10.19 59.85 0.61 1.46 16 4 C 0.18 2.56 6.56 -83.69 -0.55 2.02 16 5 C -0.18 -2.47 9.20 -39.41 -0.36 -2.83 16 6 C -0.10 -1.63 9.96 -39.42 -0.39 -2.02 16 7 C 0.13 2.29 6.29 -83.59 -0.53 1.77 16 8 N -0.68 -13.26 5.26 -14.17 -0.07 -13.34 16 9 C 0.71 14.91 8.04 -86.92 -0.70 14.21 16 10 O -0.60 -13.62 13.43 5.28 0.07 -13.55 16 11 N -0.62 -12.62 2.98 -178.76 -0.53 -13.15 16 12 C 0.13 2.35 6.44 -3.71 -0.02 2.33 16 13 C -0.13 -2.32 6.08 -26.61 -0.16 -2.49 16 14 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 15 C 0.04 0.87 2.24 -91.87 -0.21 0.66 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.51 -12.98 8.56 -34.44 -0.29 -13.28 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 20 N -0.90 -23.07 11.39 55.43 0.63 -22.44 16 21 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.11 2.42 5.33 -3.93 -0.02 2.40 16 26 C -0.08 -1.32 8.65 -39.42 -0.34 -1.66 16 27 C -0.18 -2.61 9.20 -39.40 -0.36 -2.97 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.07 0.57 6.20 -51.93 -0.32 0.25 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.07 0.60 6.20 -51.93 -0.32 0.28 16 34 H 0.12 1.43 6.14 -52.49 -0.32 1.11 16 35 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.42 8.07 6.31 -40.82 -0.26 7.81 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.47 6.99 -51.93 -0.36 1.11 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 44 H 0.10 2.39 3.76 -51.93 -0.20 2.19 16 45 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 46 H 0.13 2.48 6.39 -52.49 -0.34 2.14 16 47 H 0.12 1.51 6.14 -52.49 -0.32 1.19 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -28.65 366.34 -10.04 -38.69 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.05 Total: 10.96 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.95 Total: 0.23 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.62 Total: -56.80 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.07 Total: -13.55 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.65 -10.04 -38.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854165453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.903 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds