Wall clock time and date at job start Tue Mar 31 2020 11:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46504 * 119.99908 * 2 1 4 4 C 1.39920 * 119.99786 * 180.02562 * 2 1 3 5 5 C 1.38876 * 120.00864 * 359.97438 * 4 2 1 6 6 C 1.38072 * 119.99761 * 179.97438 * 5 4 2 7 7 C 1.38839 * 120.00091 * 359.97438 * 6 5 4 8 8 N 1.40198 * 119.98854 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99727 * 213.30837 * 8 7 6 10 10 O 1.21593 * 119.99938 * 5.32912 * 9 8 7 11 11 N 1.34778 * 120.00129 * 185.59575 * 9 8 7 12 12 C 1.46927 * 120.63201 * 174.46863 * 11 9 8 13 13 C 1.53187 * 108.77509 * 126.37248 * 12 11 9 14 14 C 1.53040 * 109.31305 * 54.63286 * 13 12 11 15 15 C 1.53032 * 109.53881 * 298.63391 * 14 13 12 16 16 H 1.08995 * 109.50099 * 301.37962 * 15 14 13 17 17 C 1.50709 * 109.49755 * 181.31863 * 15 14 13 18 18 H 1.07995 * 119.99755 * 359.97438 * 17 15 14 19 19 C 1.37871 * 119.99965 * 180.02562 * 17 15 14 20 20 N 1.31517 * 120.00426 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99994 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47366 * 59.99839 * 21 19 17 23 23 H 1.48502 * 109.47324 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47159 * 300.00199 * 21 19 17 25 25 C 1.46928 * 120.62738 * 354.18969 * 11 9 8 26 26 C 1.38829 * 120.01348 * 0.27609 * 7 6 5 27 27 C 1.38074 * 120.00319 * 359.45060 * 26 7 6 28 28 H 1.09000 * 109.46648 * 270.00028 * 1 2 3 29 29 H 1.08998 * 109.47318 * 29.99206 * 1 2 3 30 30 H 1.09003 * 109.47043 * 149.99651 * 1 2 3 31 31 H 1.08994 * 109.46993 * 270.00182 * 3 2 1 32 32 H 1.09001 * 109.46812 * 30.00076 * 3 2 1 33 33 H 1.08996 * 109.46508 * 150.00522 * 3 2 1 34 34 H 1.08000 * 120.00110 * 359.95642 * 5 4 2 35 35 H 1.07998 * 119.99485 * 180.02562 * 6 5 4 36 36 H 0.96998 * 120.00587 * 33.31862 * 8 7 6 37 37 H 1.09003 * 109.58440 * 246.15978 * 12 11 9 38 38 H 1.08999 * 109.58772 * 6.43684 * 12 11 9 39 39 H 1.09000 * 109.50038 * 174.58817 * 13 12 11 40 40 H 1.08998 * 109.49676 * 294.68188 * 13 12 11 41 41 H 1.08999 * 109.45896 * 58.66247 * 14 13 12 42 42 H 1.09002 * 109.45920 * 178.61540 * 14 13 12 43 43 H 0.96996 * 120.00114 * 179.97438 * 20 19 17 44 44 H 1.08992 * 109.58845 * 353.41773 * 25 11 9 45 45 H 1.09007 * 109.58222 * 113.84544 * 25 11 9 46 46 H 1.08000 * 119.99921 * 179.72612 * 26 7 6 47 47 H 1.08002 * 120.00681 * 180.24908 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1646 -1.2118 -0.0005 5 6 1.4704 -2.4145 -0.0005 6 6 2.1609 -3.6102 -0.0016 7 6 3.5493 -3.6100 -0.0032 8 7 4.2502 -4.8242 -0.0049 9 6 5.4327 -4.9205 0.6347 10 8 5.8454 -3.9856 1.2936 11 7 6.1602 -6.0511 0.5395 12 6 7.5036 -6.1287 1.1294 13 6 7.5663 -7.3480 2.0545 14 6 7.1490 -8.5970 1.2748 15 6 5.7084 -8.4365 0.7841 16 1 5.0486 -8.2802 1.6375 17 6 5.2876 -9.6802 0.0442 18 1 5.9785 -10.5029 -0.0657 19 6 4.0209 -9.7671 -0.4933 20 7 3.1797 -8.7650 -0.3599 21 14 3.4995 -11.3083 -1.4110 22 1 3.5843 -12.4788 -0.5011 23 1 2.1015 -11.1521 -1.8868 24 1 4.3981 -11.5196 -2.5743 25 6 5.6224 -7.2314 -0.1507 26 6 4.2436 -2.4078 0.0020 27 6 3.5534 -1.2119 -0.0026 28 1 -0.3632 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3792 1.5834 -1.0276 32 1 1.6084 2.0284 0.5139 33 1 3.1500 1.1383 0.5137 34 1 0.3904 -2.4147 0.0006 35 1 1.6210 -4.5455 -0.0020 36 1 3.8843 -5.5949 -0.4663 37 1 8.2451 -6.2326 0.3371 38 1 7.7046 -5.2227 1.7011 39 1 8.5842 -7.4727 2.4237 40 1 6.8891 -7.2013 2.8960 41 1 7.8115 -8.7291 0.4194 42 1 7.2163 -9.4698 1.9242 43 1 2.2887 -8.8261 -0.7384 44 1 4.5816 -7.0539 -0.4211 45 1 6.2074 -7.4271 -1.0494 46 1 5.3236 -2.4079 0.0052 47 1 4.0935 -0.2766 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854165453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:46 Heat of formation + Delta-G solvation = -1.413130 kcal Electronic energy + Delta-G solvation = -26817.286585 eV Core-core repulsion = 23192.598338 eV Total energy + Delta-G solvation = -3624.688247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73582 -40.31506 -38.66069 -37.23767 -35.14735 -35.05481 -33.38719 -32.08516 -31.56563 -29.72645 -28.94835 -27.02401 -26.35088 -25.12973 -23.57498 -23.41272 -22.14069 -21.34853 -20.28637 -19.31899 -18.48968 -18.21655 -17.60763 -16.82747 -16.47441 -16.24779 -16.11907 -15.85876 -15.37307 -15.27328 -15.11653 -14.69959 -14.58920 -14.45736 -14.17745 -13.90900 -13.59380 -13.48987 -13.42112 -13.26141 -12.86176 -12.83664 -12.82976 -12.68483 -12.28699 -12.23032 -11.91689 -11.83628 -11.66614 -11.49357 -11.28815 -10.90414 -10.79408 -10.49587 -9.98595 -9.83299 -9.37533 -8.12113 -7.89100 -6.23454 0.50968 0.60175 1.46531 1.48001 1.54721 1.78528 2.14066 2.32171 2.44965 2.96435 3.01164 3.22236 3.93370 4.05508 4.11315 4.16953 4.27477 4.27958 4.43498 4.47054 4.56242 4.58738 4.62478 4.65118 4.71701 4.81522 4.84810 4.88413 4.92813 4.94730 5.06111 5.12752 5.13677 5.19206 5.23137 5.28085 5.32354 5.47347 5.58437 5.65415 5.70707 5.85055 5.95491 6.04377 6.11490 6.33459 6.43569 6.59380 6.83858 6.96199 7.45015 7.57205 8.93985 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.003401 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.615793 B = 8231.323646 C = 9867.659468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.646 5.646 3 C 0.090 3.910 4 C 0.191 3.809 5 C -0.176 4.176 6 C -0.105 4.105 7 C 0.090 3.910 8 N -0.682 5.682 9 C 0.700 3.300 10 O -0.622 6.622 11 N -0.623 5.623 12 C 0.127 3.873 13 C -0.124 4.124 14 C -0.105 4.105 15 C 0.036 3.964 16 H -0.009 1.009 17 C -0.532 4.532 18 H 0.058 0.942 19 C 0.021 3.979 20 N -0.913 5.913 21 Si 0.954 3.046 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.271 1.271 25 C 0.125 3.875 26 C -0.088 4.088 27 C -0.181 4.181 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.412 0.588 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.043 0.957 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.265 0.735 44 H 0.090 0.910 45 H 0.046 0.954 46 H 0.115 0.885 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 15.781 -1.415 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.359 5.359 3 C -0.053 4.053 4 C 0.088 3.912 5 C -0.198 4.198 6 C -0.127 4.127 7 C -0.005 4.005 8 N -0.331 5.331 9 C 0.402 3.598 10 O -0.505 6.505 11 N -0.359 5.359 12 C 0.004 3.996 13 C -0.162 4.162 14 C -0.142 4.142 15 C 0.017 3.983 16 H 0.009 0.991 17 C -0.571 4.571 18 H 0.076 0.924 19 C -0.179 4.179 20 N -0.552 5.552 21 Si 0.780 3.220 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.196 1.196 25 C 0.002 3.998 26 C -0.109 4.109 27 C -0.204 4.204 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.146 0.854 36 H 0.251 0.749 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.133 0.867 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.609 16.615 -1.017 16.850 hybrid contribution -0.593 -1.582 -0.545 1.775 sum -3.202 15.034 -1.563 15.450 Atomic orbital electron populations 1.21765 0.78308 1.03589 1.01609 1.46531 1.05811 1.02720 1.80841 1.21747 0.97418 0.84427 1.01665 1.17898 0.91033 0.86707 0.95522 1.20632 1.00380 0.89806 1.09003 1.20824 0.91535 0.99163 1.01134 1.17671 0.91285 0.84895 1.06669 1.42893 1.20978 1.13449 1.55829 1.16002 0.80865 0.83200 0.79736 1.90785 1.72710 1.39802 1.47172 1.47714 1.17643 1.11991 1.58506 1.21575 0.81821 0.99239 0.96951 1.21889 1.02210 0.94550 0.97572 1.21516 0.97033 0.96603 0.99088 1.18840 0.92730 0.92944 0.93802 0.99112 1.21417 0.98702 1.01651 1.35301 0.92371 1.25666 0.96513 0.98992 0.96713 1.69891 1.06995 1.32325 1.46029 0.85674 0.77169 0.80139 0.79001 1.20315 1.21081 1.19610 1.21828 0.99244 0.84029 0.94663 1.20873 0.99869 0.91117 0.99019 1.20658 0.92465 0.97853 1.09388 0.93160 0.89672 0.91226 0.92868 0.89712 0.91756 0.83527 0.85405 0.74862 0.90351 0.90015 0.88377 0.93837 0.92142 0.92943 0.92611 0.89166 0.93517 0.86674 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 10.19 127.77 1.30 2.55 16 2 N -0.65 -12.71 3.42 -747.07 -2.55 -15.26 16 3 C 0.09 1.30 10.19 127.77 1.30 2.60 16 4 C 0.19 5.02 6.56 38.16 0.25 5.27 16 5 C -0.18 -4.74 9.20 22.38 0.21 -4.53 16 6 C -0.11 -3.40 9.96 22.37 0.22 -3.18 16 7 C 0.09 3.36 6.29 38.09 0.24 3.60 16 8 N -0.68 -27.74 5.26 -317.02 -1.67 -29.41 16 9 C 0.70 30.59 8.04 179.05 1.44 32.03 16 10 O -0.62 -29.05 13.43 -4.01 -0.05 -29.10 16 11 N -0.62 -25.88 2.98 -837.73 -2.50 -28.37 16 12 C 0.13 4.45 6.44 86.36 0.56 5.01 16 13 C -0.12 -4.17 6.08 30.67 0.19 -3.98 16 14 C -0.10 -4.07 5.11 30.62 0.16 -3.91 16 15 C 0.04 1.72 2.24 -11.61 -0.03 1.69 16 16 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 17 C -0.53 -27.29 8.56 25.60 0.22 -27.07 16 18 H 0.06 2.93 7.74 -2.91 -0.02 2.90 16 19 C 0.02 1.07 5.30 84.65 0.45 1.51 16 20 N -0.91 -47.99 11.39 21.45 0.24 -47.75 16 21 Si 0.95 41.00 29.54 68.60 2.03 43.02 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 C 0.12 5.58 5.33 86.22 0.46 6.04 16 26 C -0.09 -3.11 8.65 22.37 0.19 -2.92 16 27 C -0.18 -5.24 9.20 22.38 0.21 -5.03 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.81 8.07 -2.39 -0.02 0.79 16 30 H 0.07 0.96 6.20 -2.39 -0.01 0.94 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.06 0.99 6.20 -2.39 -0.01 0.97 16 34 H 0.15 3.13 6.14 -2.91 -0.02 3.11 16 35 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.41 16.94 6.31 -92.71 -0.59 16.35 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 38 H 0.08 2.90 6.99 -2.39 -0.02 2.88 16 39 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 44 H 0.09 4.31 3.76 -2.39 -0.01 4.30 16 45 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 46 H 0.12 4.46 6.39 -2.91 -0.02 4.45 16 47 H 0.14 3.36 6.14 -2.91 -0.02 3.34 16 Total: -1.00 -62.69 366.34 3.26 -59.43 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.40 Total: 37.75 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 7.36 Total: 9.69 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.47 Total: -120.80 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.10 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Total: -62.69 3.26 -59.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854165453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.020 kcal (2) G-P(sol) polarization free energy of solvation -62.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds