Wall clock time and date at job start Tue Mar 31 2020 11:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99867 * 2 1 4 4 C 1.39916 * 119.99633 * 180.02562 * 2 1 3 5 5 C 1.38878 * 120.00997 * 359.97438 * 4 2 1 6 6 C 1.38070 * 119.99481 * 180.02562 * 5 4 2 7 7 C 1.38839 * 120.00904 * 0.02562 * 6 5 4 8 8 N 1.40187 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00195 * 212.83985 * 8 7 6 10 10 O 1.21595 * 119.99848 * 7.61238 * 9 8 7 11 11 N 1.34778 * 120.00604 * 187.34223 * 9 8 7 12 12 C 1.46930 * 120.62546 * 354.78838 * 11 9 8 13 13 C 1.53186 * 108.77615 * 233.58885 * 12 11 9 14 14 C 1.53048 * 109.31252 * 305.36707 * 13 12 11 15 15 C 1.53039 * 109.53558 * 61.36302 * 14 13 12 16 16 H 1.09000 * 109.49356 * 58.59165 * 15 14 13 17 17 C 1.50701 * 109.49393 * 178.65068 * 15 14 13 18 18 H 1.08002 * 120.00127 * 0.02562 * 17 15 14 19 19 C 1.37877 * 119.99963 * 180.02562 * 17 15 14 20 20 N 1.31514 * 120.00070 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00089 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47135 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47034 * 119.99756 * 21 19 17 24 24 H 1.48494 * 109.47157 * 239.99524 * 21 19 17 25 25 C 1.46918 * 120.63477 * 174.51669 * 11 9 8 26 26 C 1.38839 * 120.00332 * 0.23111 * 7 6 5 27 27 C 1.38067 * 120.00949 * 359.49147 * 26 7 6 28 28 H 1.09003 * 109.46969 * 269.99542 * 1 2 3 29 29 H 1.08997 * 109.47269 * 29.99258 * 1 2 3 30 30 H 1.09002 * 109.47316 * 150.00063 * 1 2 3 31 31 H 1.09003 * 109.47112 * 240.00766 * 3 2 1 32 32 H 1.09002 * 109.47059 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46916 * 120.00389 * 3 2 1 34 34 H 1.07998 * 120.00178 * 0.04157 * 5 4 2 35 35 H 1.08008 * 119.99298 * 179.97438 * 6 5 4 36 36 H 0.96998 * 120.00412 * 32.83245 * 8 7 6 37 37 H 1.09002 * 109.58607 * 353.37575 * 12 11 9 38 38 H 1.09000 * 109.58551 * 113.65872 * 12 11 9 39 39 H 1.08998 * 109.50265 * 65.31663 * 13 12 11 40 40 H 1.09002 * 109.50036 * 185.41421 * 13 12 11 41 41 H 1.08997 * 109.45851 * 181.38441 * 14 13 12 42 42 H 1.09000 * 109.45569 * 301.34635 * 14 13 12 43 43 H 0.96999 * 120.00285 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.58550 * 246.19978 * 25 11 9 45 45 H 1.08997 * 109.58912 * 6.61781 * 25 11 9 46 46 H 1.08000 * 119.99139 * 179.72777 * 26 7 6 47 47 H 1.07999 * 120.00566 * 180.25783 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1645 -1.2118 -0.0005 5 6 1.4703 -2.4145 -0.0005 6 6 2.1609 -3.6101 -0.0005 7 6 3.5493 -3.6101 0.0000 8 7 4.2502 -4.8241 0.0005 9 6 5.4362 -4.9173 0.6340 10 8 5.8333 -3.9949 1.3197 11 7 6.1796 -6.0348 0.5118 12 6 5.6615 -7.2029 -0.2136 13 6 5.7617 -8.4319 0.6953 14 6 7.2041 -8.5842 1.1836 15 6 7.6027 -7.3495 1.9952 16 1 6.9228 -7.2340 2.8392 17 6 9.0118 -7.5150 2.5033 18 1 9.5680 -8.4110 2.2705 19 6 9.5908 -6.5226 3.2654 20 7 8.9137 -5.4313 3.5485 21 14 11.3377 -6.7275 3.8947 22 1 11.8773 -8.0343 3.4407 23 1 12.1865 -5.6300 3.3652 24 1 11.3378 -6.6811 5.3790 25 6 7.5256 -6.1062 1.0963 26 6 4.2435 -2.4077 0.0054 27 6 3.5534 -1.2119 -0.0004 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 2.8241 1.3265 -0.8901 32 1 1.4891 2.0972 0.0005 33 1 2.8242 1.3264 0.8900 34 1 0.3903 -2.4147 -0.0008 35 1 1.6209 -4.5456 -0.0001 36 1 3.8817 -5.5972 -0.4549 37 1 4.6195 -7.0323 -0.4840 38 1 6.2516 -7.3639 -1.1158 39 1 5.0991 -8.3062 1.5516 40 1 5.4706 -9.3218 0.1372 41 1 7.2834 -9.4721 1.8107 42 1 7.8691 -8.6851 0.3258 43 1 9.3212 -4.7329 4.0843 44 1 8.2663 -6.1811 0.3000 45 1 7.7140 -5.2119 1.6902 46 1 5.3235 -2.4079 0.0102 47 1 4.0935 -0.2766 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854165455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:50 Heat of formation + Delta-G solvation = 17.372113 kcal Electronic energy + Delta-G solvation = -26614.207874 eV Core-core repulsion = 22990.334216 eV Total energy + Delta-G solvation = -3623.873658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30634 -39.10482 -37.17923 -35.99304 -33.94846 -33.06475 -31.72735 -31.01635 -29.77509 -28.69128 -28.24230 -25.17875 -24.96466 -23.81741 -22.45428 -21.83811 -20.99682 -19.86694 -18.78946 -17.92628 -17.31854 -16.53624 -16.12923 -15.65640 -15.14179 -14.84651 -14.71453 -14.39296 -14.16321 -13.72538 -13.64673 -13.55789 -13.37596 -12.84202 -12.75215 -12.60317 -12.53947 -12.44682 -12.16510 -12.09081 -12.05918 -11.84059 -10.99121 -10.91336 -10.89061 -10.48746 -10.41721 -10.31534 -10.20562 -9.85672 -9.41421 -9.08686 -8.93207 -8.86494 -8.68906 -8.40401 -7.71223 -6.89007 -5.95557 -4.04824 1.59964 1.74733 3.06397 3.21875 3.33151 3.40795 3.43621 3.71039 4.17376 4.34953 4.47172 4.81709 4.87663 5.07433 5.09961 5.19920 5.24419 5.33982 5.42352 5.48667 5.49124 5.52612 5.57642 5.60731 5.70176 5.73265 5.96851 6.14183 6.19059 6.22045 6.31870 6.34838 6.53485 6.63085 6.70854 6.80305 6.85877 6.99633 7.07321 7.18653 7.25392 7.33883 7.49955 7.56475 7.76571 7.94103 8.07576 8.42911 8.52586 8.98953 9.20232 9.60677 11.09341 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002944 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.208139 B = 9508.122868 C =10711.077434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.644 5.644 3 C 0.099 3.901 4 C 0.186 3.814 5 C -0.177 4.177 6 C -0.109 4.109 7 C 0.127 3.873 8 N -0.695 5.695 9 C 0.697 3.303 10 O -0.566 6.566 11 N -0.619 5.619 12 C 0.114 3.886 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.039 3.961 16 H 0.029 0.971 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.877 5.877 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.128 3.872 26 C -0.073 4.073 27 C -0.170 4.170 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.398 0.602 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.263 0.737 44 H 0.041 0.959 45 H 0.123 0.877 46 H 0.137 0.863 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.911 6.583 -11.090 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.359 5.359 3 C -0.044 4.044 4 C 0.086 3.914 5 C -0.200 4.200 6 C -0.131 4.131 7 C 0.030 3.970 8 N -0.346 5.346 9 C 0.399 3.601 10 O -0.442 6.442 11 N -0.355 5.355 12 C -0.010 4.010 13 C -0.172 4.172 14 C -0.148 4.148 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 C 0.008 3.992 26 C -0.094 4.094 27 C -0.193 4.193 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.235 0.765 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.141 0.859 46 H 0.155 0.845 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.585 7.544 -10.482 21.020 hybrid contribution 0.678 -0.525 0.199 0.880 sum -15.907 7.019 -10.283 20.200 Atomic orbital electron populations 1.21581 0.80011 1.02205 1.00815 1.46226 1.04547 1.03086 1.82025 1.21537 0.96851 0.84834 1.01216 1.17751 0.91134 0.85438 0.97099 1.20339 0.99051 0.90512 1.10053 1.20555 0.92014 0.97828 1.02675 1.17358 0.90247 0.85364 1.04017 1.42939 1.21694 1.12177 1.57762 1.15973 0.80046 0.83912 0.80186 1.90946 1.71648 1.39037 1.42531 1.47832 1.18831 1.11636 1.57217 1.21527 0.97399 0.86997 0.95092 1.21949 0.99918 0.96152 0.99166 1.21619 0.93024 1.00484 0.99634 1.19062 0.96871 0.88950 0.93121 0.95249 1.21105 0.98578 1.03764 1.32527 0.92348 1.25066 0.97774 0.95360 0.95872 1.69915 1.36564 1.07238 1.37738 0.86557 0.84922 0.78034 0.78614 1.19829 1.20990 1.21054 1.22310 0.76299 1.05139 0.95476 1.21006 1.00961 0.90246 0.97177 1.20518 0.91732 0.98233 1.08801 0.93807 0.91991 0.91514 0.93021 0.91308 0.92880 0.86099 0.86141 0.76470 0.92215 0.91927 0.92139 0.92242 0.93026 0.93169 0.92724 0.94082 0.85868 0.84548 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 10.16 59.85 0.61 1.34 16 2 N -0.64 -6.75 3.42 -187.48 -0.64 -7.39 16 3 C 0.10 0.83 9.40 59.84 0.56 1.39 16 4 C 0.19 2.42 6.56 -83.69 -0.55 1.87 16 5 C -0.18 -2.17 9.20 -39.41 -0.36 -2.53 16 6 C -0.11 -1.44 9.95 -39.42 -0.39 -1.83 16 7 C 0.13 2.02 6.29 -83.59 -0.53 1.49 16 8 N -0.69 -11.26 5.26 -14.18 -0.07 -11.33 16 9 C 0.70 14.54 8.00 -86.92 -0.70 13.85 16 10 O -0.57 -14.28 13.51 5.28 0.07 -14.21 16 11 N -0.62 -12.53 2.97 -178.24 -0.53 -13.05 16 12 C 0.11 1.75 6.39 -3.71 -0.02 1.72 16 13 C -0.13 -2.13 6.08 -26.61 -0.16 -2.29 16 14 C -0.11 -2.18 5.10 -26.69 -0.14 -2.31 16 15 C 0.04 0.97 2.26 -91.43 -0.21 0.77 16 16 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.52 -14.16 8.56 -34.44 -0.29 -14.46 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 20 N -0.88 -25.85 11.41 55.43 0.63 -25.22 16 21 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.13 3.12 5.44 -3.50 -0.02 3.10 16 26 C -0.07 -1.23 8.65 -39.42 -0.34 -1.57 16 27 C -0.17 -2.46 9.31 -39.40 -0.37 -2.83 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 30 H 0.07 0.47 6.20 -51.93 -0.32 0.15 16 31 H 0.05 0.42 7.95 -51.93 -0.41 0.01 16 32 H 0.07 0.42 7.79 -51.93 -0.40 0.02 16 33 H 0.05 0.47 7.95 -51.93 -0.41 0.06 16 34 H 0.12 1.19 6.14 -52.49 -0.32 0.86 16 35 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.40 5.10 6.30 -40.82 -0.26 4.84 16 37 H 0.06 0.72 5.64 -51.93 -0.29 0.43 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 45 H 0.12 3.53 5.14 -51.93 -0.27 3.26 16 46 H 0.14 2.61 6.43 -52.49 -0.34 2.27 16 47 H 0.12 1.55 6.73 -52.49 -0.35 1.20 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -33.08 367.51 -10.16 -43.24 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.14 Total: 6.70 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -3.00 Total: -0.63 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.61 Total: -57.00 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.07 Total: -14.21 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.08 -10.16 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854165455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.615 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds