Wall clock time and date at job start Tue Mar 31 2020 11:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99867 * 2 1 4 4 C 1.39916 * 119.99633 * 180.02562 * 2 1 3 5 5 C 1.38878 * 120.00997 * 359.97438 * 4 2 1 6 6 C 1.38070 * 119.99481 * 180.02562 * 5 4 2 7 7 C 1.38839 * 120.00904 * 0.02562 * 6 5 4 8 8 N 1.40187 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00195 * 212.83985 * 8 7 6 10 10 O 1.21595 * 119.99848 * 7.61238 * 9 8 7 11 11 N 1.34778 * 120.00604 * 187.34223 * 9 8 7 12 12 C 1.46930 * 120.62546 * 354.78838 * 11 9 8 13 13 C 1.53186 * 108.77615 * 233.58885 * 12 11 9 14 14 C 1.53048 * 109.31252 * 305.36707 * 13 12 11 15 15 C 1.53039 * 109.53558 * 61.36302 * 14 13 12 16 16 H 1.09000 * 109.49356 * 58.59165 * 15 14 13 17 17 C 1.50701 * 109.49393 * 178.65068 * 15 14 13 18 18 H 1.08002 * 120.00127 * 0.02562 * 17 15 14 19 19 C 1.37877 * 119.99963 * 180.02562 * 17 15 14 20 20 N 1.31514 * 120.00070 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00089 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47135 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47034 * 119.99756 * 21 19 17 24 24 H 1.48494 * 109.47157 * 239.99524 * 21 19 17 25 25 C 1.46918 * 120.63477 * 174.51669 * 11 9 8 26 26 C 1.38839 * 120.00332 * 0.23111 * 7 6 5 27 27 C 1.38067 * 120.00949 * 359.49147 * 26 7 6 28 28 H 1.09003 * 109.46969 * 269.99542 * 1 2 3 29 29 H 1.08997 * 109.47269 * 29.99258 * 1 2 3 30 30 H 1.09002 * 109.47316 * 150.00063 * 1 2 3 31 31 H 1.09003 * 109.47112 * 240.00766 * 3 2 1 32 32 H 1.09002 * 109.47059 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46916 * 120.00389 * 3 2 1 34 34 H 1.07998 * 120.00178 * 0.04157 * 5 4 2 35 35 H 1.08008 * 119.99298 * 179.97438 * 6 5 4 36 36 H 0.96998 * 120.00412 * 32.83245 * 8 7 6 37 37 H 1.09002 * 109.58607 * 353.37575 * 12 11 9 38 38 H 1.09000 * 109.58551 * 113.65872 * 12 11 9 39 39 H 1.08998 * 109.50265 * 65.31663 * 13 12 11 40 40 H 1.09002 * 109.50036 * 185.41421 * 13 12 11 41 41 H 1.08997 * 109.45851 * 181.38441 * 14 13 12 42 42 H 1.09000 * 109.45569 * 301.34635 * 14 13 12 43 43 H 0.96999 * 120.00285 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.58550 * 246.19978 * 25 11 9 45 45 H 1.08997 * 109.58912 * 6.61781 * 25 11 9 46 46 H 1.08000 * 119.99139 * 179.72777 * 26 7 6 47 47 H 1.07999 * 120.00566 * 180.25783 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1645 -1.2118 -0.0005 5 6 1.4703 -2.4145 -0.0005 6 6 2.1609 -3.6101 -0.0005 7 6 3.5493 -3.6101 0.0000 8 7 4.2502 -4.8241 0.0005 9 6 5.4362 -4.9173 0.6340 10 8 5.8333 -3.9949 1.3197 11 7 6.1796 -6.0348 0.5118 12 6 5.6615 -7.2029 -0.2136 13 6 5.7617 -8.4319 0.6953 14 6 7.2041 -8.5842 1.1836 15 6 7.6027 -7.3495 1.9952 16 1 6.9228 -7.2340 2.8392 17 6 9.0118 -7.5150 2.5033 18 1 9.5680 -8.4110 2.2705 19 6 9.5908 -6.5226 3.2654 20 7 8.9137 -5.4313 3.5485 21 14 11.3377 -6.7275 3.8947 22 1 11.8773 -8.0343 3.4407 23 1 12.1865 -5.6300 3.3652 24 1 11.3378 -6.6811 5.3790 25 6 7.5256 -6.1062 1.0963 26 6 4.2435 -2.4077 0.0054 27 6 3.5534 -1.2119 -0.0004 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 2.8241 1.3265 -0.8901 32 1 1.4891 2.0972 0.0005 33 1 2.8242 1.3264 0.8900 34 1 0.3903 -2.4147 -0.0008 35 1 1.6209 -4.5456 -0.0001 36 1 3.8817 -5.5972 -0.4549 37 1 4.6195 -7.0323 -0.4840 38 1 6.2516 -7.3639 -1.1158 39 1 5.0991 -8.3062 1.5516 40 1 5.4706 -9.3218 0.1372 41 1 7.2834 -9.4721 1.8107 42 1 7.8691 -8.6851 0.3258 43 1 9.3212 -4.7329 4.0843 44 1 8.2663 -6.1811 0.3000 45 1 7.7140 -5.2119 1.6902 46 1 5.3235 -2.4079 0.0102 47 1 4.0935 -0.2766 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854165455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:49 Heat of formation + Delta-G solvation = -3.042367 kcal Electronic energy + Delta-G solvation = -26615.093112 eV Core-core repulsion = 22990.334216 eV Total energy + Delta-G solvation = -3624.758896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72283 -40.28648 -38.62400 -37.20665 -35.55178 -34.73841 -33.35807 -32.05924 -31.51588 -29.82550 -28.94506 -27.06081 -26.36261 -25.01552 -23.56876 -23.46080 -22.20403 -21.32387 -20.32348 -19.32729 -18.63425 -18.12737 -17.61165 -16.84066 -16.55400 -16.14690 -16.00393 -15.87695 -15.31685 -15.21894 -15.16423 -14.70700 -14.52654 -14.37650 -14.28323 -13.82852 -13.62392 -13.56264 -13.43622 -13.35115 -12.91289 -12.88995 -12.77334 -12.64466 -12.28641 -12.21143 -11.94564 -11.83502 -11.63931 -11.48554 -11.15974 -10.93876 -10.79677 -10.51926 -9.98752 -9.82849 -9.34823 -8.08977 -7.90403 -6.26547 0.52012 0.60532 1.39743 1.41282 1.53470 1.73749 2.18874 2.32283 2.42448 3.00209 3.01579 3.19936 3.95398 4.02218 4.08463 4.15917 4.22382 4.28238 4.41846 4.49129 4.55180 4.59833 4.63077 4.67107 4.75702 4.80169 4.82787 4.85363 4.90821 4.94687 5.09600 5.11273 5.18650 5.24394 5.28052 5.31048 5.36156 5.51903 5.56558 5.66016 5.67824 5.90671 5.98740 6.02892 6.18268 6.36199 6.42852 6.59327 6.86968 7.07625 7.43448 7.64169 8.94197 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.002944 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.208139 B = 9508.122868 C =10711.077434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.646 5.646 3 C 0.093 3.907 4 C 0.189 3.811 5 C -0.174 4.174 6 C -0.095 4.095 7 C 0.093 3.907 8 N -0.672 5.672 9 C 0.690 3.310 10 O -0.622 6.622 11 N -0.623 5.623 12 C 0.107 3.893 13 C -0.125 4.125 14 C -0.105 4.105 15 C 0.038 3.962 16 H -0.016 1.016 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.008 3.992 20 N -0.914 5.914 21 Si 0.958 3.042 22 H -0.259 1.259 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.143 3.857 26 C -0.097 4.097 27 C -0.186 4.186 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.416 0.584 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.107 0.893 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.258 0.742 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.755 5.455 -12.915 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.359 5.359 3 C -0.050 4.050 4 C 0.086 3.914 5 C -0.197 4.197 6 C -0.116 4.116 7 C -0.003 4.003 8 N -0.324 5.324 9 C 0.392 3.608 10 O -0.502 6.502 11 N -0.359 5.359 12 C -0.015 4.015 13 C -0.163 4.163 14 C -0.143 4.143 15 C 0.018 3.982 16 H 0.002 0.998 17 C -0.572 4.572 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.553 5.553 21 Si 0.783 3.217 22 H -0.183 1.183 23 H -0.209 1.209 24 H -0.210 1.210 25 C 0.020 3.980 26 C -0.118 4.118 27 C -0.209 4.209 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.257 0.743 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.502 6.392 -12.359 23.957 hybrid contribution 1.442 -0.061 0.754 1.628 sum -18.060 6.331 -11.605 22.381 Atomic orbital electron populations 1.21822 0.77917 1.03891 1.01609 1.46545 1.05966 1.02664 1.80751 1.21684 0.97571 0.85002 1.00777 1.17929 0.90629 0.87138 0.95666 1.20739 1.00649 0.89689 1.08617 1.20866 0.90525 0.99666 1.00527 1.17581 0.91512 0.84560 1.06604 1.42554 1.19984 1.13143 1.56759 1.16195 0.81182 0.83296 0.80084 1.90909 1.73202 1.41037 1.45040 1.47712 1.17500 1.13253 1.57400 1.21921 0.99981 0.84615 0.94952 1.21909 0.96679 0.98348 0.99398 1.21510 0.96076 0.97551 0.99130 1.18994 0.94887 0.91744 0.92536 0.99792 1.21551 0.99842 1.03635 1.32206 0.91855 1.25926 1.01889 0.95020 0.96329 1.70128 1.38385 1.08119 1.38658 0.85511 0.79975 0.78428 0.77781 1.18279 1.20902 1.20990 1.21695 0.78751 1.02788 0.94779 1.20847 0.99402 0.92165 0.99393 1.20544 0.92939 0.97541 1.09836 0.93339 0.89695 0.90557 0.92999 0.88444 0.93888 0.82772 0.82937 0.74319 0.88159 0.89859 0.93291 0.87489 0.92968 0.92235 0.93277 0.94393 0.90722 0.88373 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.16 127.77 1.30 2.33 16 2 N -0.65 -12.08 3.42 -747.08 -2.55 -14.63 16 3 C 0.09 1.42 9.40 127.77 1.20 2.62 16 4 C 0.19 4.65 6.56 38.16 0.25 4.91 16 5 C -0.17 -3.78 9.20 22.38 0.21 -3.58 16 6 C -0.09 -2.26 9.95 22.37 0.22 -2.04 16 7 C 0.09 2.98 6.29 38.09 0.24 3.22 16 8 N -0.67 -21.63 5.26 -317.02 -1.67 -23.30 16 9 C 0.69 30.06 8.00 179.06 1.43 31.50 16 10 O -0.62 -34.04 13.51 -4.02 -0.05 -34.10 16 11 N -0.62 -25.75 2.97 -836.09 -2.48 -28.23 16 12 C 0.11 3.03 6.39 86.36 0.55 3.58 16 13 C -0.13 -3.66 6.08 30.67 0.19 -3.47 16 14 C -0.11 -4.06 5.10 30.62 0.16 -3.90 16 15 C 0.04 1.95 2.26 -11.32 -0.03 1.92 16 16 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 17 C -0.53 -29.87 8.56 25.60 0.22 -29.65 16 18 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 19 C 0.01 0.44 5.31 84.65 0.45 0.89 16 20 N -0.91 -57.18 11.41 21.45 0.24 -56.94 16 21 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 25 C 0.14 7.32 5.44 86.51 0.47 7.79 16 26 C -0.10 -3.48 8.65 22.37 0.19 -3.29 16 27 C -0.19 -5.57 9.31 22.38 0.21 -5.36 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.62 7.92 -2.39 -0.02 0.60 16 30 H 0.08 0.74 6.20 -2.39 -0.01 0.73 16 31 H 0.05 0.80 7.95 -2.39 -0.02 0.78 16 32 H 0.10 0.92 7.79 -2.39 -0.02 0.90 16 33 H 0.04 0.75 7.95 -2.39 -0.02 0.73 16 34 H 0.15 2.31 6.14 -2.91 -0.02 2.29 16 35 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.42 9.69 6.30 -92.71 -0.58 9.11 16 37 H 0.10 2.02 5.64 -2.39 -0.01 2.00 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.07 4.62 5.14 -2.39 -0.01 4.61 16 46 H 0.10 4.22 6.43 -2.91 -0.02 4.20 16 47 H 0.12 3.43 6.73 -2.91 -0.02 3.41 16 Total: -1.00 -80.12 367.51 3.17 -76.95 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.39 Total: 25.61 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 7.26 Total: 7.45 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -6.45 Total: -123.10 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.05 Total: -34.10 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -80.12 3.17 -76.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854165455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.911 kcal (2) G-P(sol) polarization free energy of solvation -80.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds