Wall clock time and date at job start Tue Mar 31 2020 11:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99882 * 2 1 4 4 C 1.53001 * 109.47100 * 125.00241 * 3 2 1 5 5 C 1.52996 * 109.47132 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47132 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47132 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47122 * 180.02562 * 7 6 5 9 9 C 1.46511 * 119.99800 * 269.99722 * 8 7 6 10 10 C 1.34777 * 120.00516 * 89.99850 * 8 7 6 11 11 O 1.21571 * 119.99679 * 359.97438 * 10 8 7 12 12 N 1.34776 * 120.00254 * 180.02562 * 10 8 7 13 13 C 1.39244 * 120.00101 * 185.78748 * 12 10 8 14 14 C 1.39679 * 119.57521 * 18.75634 * 13 12 10 15 15 C 1.38642 * 119.49813 * 180.02562 * 14 13 12 16 16 C 1.38358 * 118.67020 * 359.74938 * 15 14 13 17 17 C 1.40579 * 119.12753 * 0.49374 * 16 15 14 18 18 C 1.41327 * 119.78337 * 179.76891 * 17 16 15 19 19 H 1.08004 * 120.00721 * 8.66160 * 18 17 16 20 20 C 1.40034 * 119.99606 * 188.65724 * 18 17 16 21 21 N 1.30745 * 119.99717 * 195.96432 * 20 18 17 22 22 Si 1.86794 * 120.00108 * 15.96891 * 20 18 17 23 23 H 1.48503 * 109.46844 * 269.99895 * 22 20 18 24 24 H 1.48495 * 109.47373 * 29.99380 * 22 20 18 25 25 H 1.48493 * 109.47617 * 149.99898 * 22 20 18 26 26 N 1.31903 * 119.57573 * 198.78736 * 13 12 10 27 27 H 1.07993 * 119.99950 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.99865 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99865 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47190 * 5.00048 * 3 2 1 31 31 H 1.09001 * 109.46637 * 244.99819 * 3 2 1 32 32 H 1.09004 * 109.47215 * 59.99412 * 4 3 2 33 33 H 1.08997 * 109.47244 * 300.00050 * 4 3 2 34 34 H 1.08998 * 109.47061 * 59.99868 * 5 4 3 35 35 H 1.08997 * 109.47049 * 299.99260 * 5 4 3 36 36 H 1.09004 * 109.47215 * 59.99552 * 6 5 4 37 37 H 1.08997 * 109.47244 * 300.00189 * 6 5 4 38 38 H 1.08996 * 109.47339 * 60.00330 * 7 6 5 39 39 H 1.09001 * 109.47467 * 299.99518 * 7 6 5 40 40 H 1.08997 * 109.47088 * 270.00030 * 9 8 7 41 41 H 1.09004 * 109.46806 * 30.00153 * 9 8 7 42 42 H 1.08999 * 109.47153 * 149.99875 * 9 8 7 43 43 H 0.97000 * 120.00065 * 5.78275 * 12 10 8 44 44 H 1.08003 * 120.25539 * 0.02562 * 14 13 12 45 45 H 1.08002 * 120.67118 * 180.02562 * 15 14 13 46 46 H 1.08001 * 120.43896 * 180.24697 * 16 15 14 47 47 H 0.96995 * 120.00284 * 354.92930 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8005 2.6578 1.1812 6 6 4.7716 2.6861 2.3632 7 6 5.5366 4.0111 2.3632 8 7 6.4669 4.0378 3.4946 9 6 6.0319 4.5709 4.7881 10 6 7.7228 3.5721 3.3457 11 8 8.0836 3.1294 2.2725 12 7 8.5785 3.5963 4.3867 13 6 9.9089 3.2286 4.2031 14 6 10.4498 3.2179 2.9154 15 6 11.7745 2.8510 2.7344 16 6 12.5263 2.5093 3.8445 17 6 11.9227 2.5348 5.1139 18 6 12.6764 2.1836 6.2567 19 1 13.7427 2.0331 6.1752 20 6 12.0404 2.0309 7.4949 21 7 12.7466 2.0174 8.5952 22 14 10.1833 1.8463 7.5746 23 1 9.5575 3.1873 7.6985 24 1 9.6978 1.1861 6.3363 25 1 9.8181 1.0189 8.7524 26 7 10.6419 2.8942 5.2475 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 3.7400 0.5065 1.0921 33 1 2.4774 1.2356 2.1130 34 1 3.0958 3.4846 1.2706 35 1 4.3584 2.7548 0.2499 36 1 5.4763 1.8592 2.2744 37 1 4.2135 2.5892 3.2944 38 1 4.8317 4.8376 2.4524 39 1 6.0948 4.1084 1.4321 40 1 6.2384 5.6404 4.8283 41 1 4.9618 4.4026 4.9092 42 1 6.5720 4.0663 5.5892 43 1 8.2675 3.8700 5.2638 44 1 9.8408 3.4934 2.0670 45 1 12.2122 2.8366 1.7471 46 1 13.5620 2.2229 3.7369 47 1 13.7152 2.0391 8.5501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881151781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:53 Heat of formation + Delta-G solvation = 5.476754 kcal Electronic energy + Delta-G solvation = -25755.163543 eV Core-core repulsion = 22130.774064 eV Total energy + Delta-G solvation = -3624.389479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.47191 -38.44771 -37.07502 -35.82350 -34.64076 -33.88654 -33.31506 -31.03764 -30.48325 -29.20339 -27.18419 -25.89217 -25.17410 -23.05631 -21.78783 -21.39760 -21.22722 -20.02423 -19.48510 -18.47453 -17.96008 -16.81696 -16.13691 -15.92925 -15.27628 -15.22598 -14.93645 -14.70159 -14.20765 -14.00137 -13.72255 -13.69701 -13.40254 -13.05922 -12.95726 -12.69697 -12.50583 -12.37937 -12.19830 -12.06057 -11.83121 -11.72927 -11.36798 -11.12438 -11.11530 -10.92827 -10.85260 -10.68225 -10.29192 -9.95964 -9.73473 -9.65704 -9.32904 -9.06244 -8.67140 -8.46987 -7.87084 -7.33791 -7.23657 -4.71972 1.94936 2.43002 2.66759 2.72811 3.41670 3.47075 3.64497 3.89097 4.00772 4.34762 4.41278 4.63137 4.63783 4.77422 4.80149 4.92200 4.96726 5.01108 5.22510 5.27815 5.32659 5.40098 5.50117 5.54066 5.58242 5.60364 5.65010 5.68129 5.75445 5.88418 5.97843 6.08006 6.14405 6.16982 6.30312 6.36481 6.44183 6.53119 6.59597 6.72839 6.89131 7.22418 7.35711 7.47370 7.67171 7.80302 7.91412 8.21700 8.37477 8.66951 8.78635 9.48891 10.00286 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.002543 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.904617 B =11007.002293 C =11392.003351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.096 4.096 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.138 4.138 7 C 0.135 3.865 8 N -0.634 5.634 9 C 0.076 3.924 10 C 0.710 3.290 11 O -0.561 6.561 12 N -0.667 5.667 13 C 0.399 3.601 14 C -0.309 4.309 15 C -0.036 4.036 16 C -0.281 4.281 17 C 0.276 3.724 18 C -0.483 4.483 19 H 0.083 0.917 20 C 0.049 3.951 21 N -0.806 5.806 22 Si 1.143 2.857 23 H -0.289 1.289 24 H -0.280 1.280 25 H -0.327 1.327 26 N -0.597 5.597 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.402 0.598 44 H 0.140 0.860 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.070 2.797 -10.636 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.177 4.177 7 C 0.012 3.988 8 N -0.372 5.372 9 C -0.068 4.068 10 C 0.411 3.589 11 O -0.437 6.437 12 N -0.316 5.316 13 C 0.167 3.833 14 C -0.334 4.334 15 C -0.060 4.060 16 C -0.303 4.303 17 C 0.152 3.848 18 C -0.515 4.515 19 H 0.101 0.899 20 C -0.172 4.172 21 N -0.428 5.428 22 Si 0.977 3.023 23 H -0.216 1.216 24 H -0.207 1.207 25 H -0.260 1.260 26 N -0.322 5.322 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.239 0.761 44 H 0.158 0.842 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.295 2.404 -9.527 24.364 hybrid contribution 1.720 0.230 -1.212 2.117 sum -20.575 2.635 -10.739 23.358 Atomic orbital electron populations 1.23841 0.96001 1.01727 1.02161 1.23036 0.96062 0.98785 0.99026 1.20804 0.98218 0.95124 0.99174 1.21534 0.97728 0.98025 0.97972 1.21512 0.97752 0.97408 0.98681 1.22002 0.98341 0.98864 0.98445 1.21339 0.90978 0.97074 0.89386 1.47079 1.11062 1.66298 1.12760 1.21777 1.01206 0.99070 0.84726 1.15668 0.80215 0.78948 0.84026 1.90836 1.75645 1.51139 1.26111 1.42503 1.08515 1.68678 1.11867 1.17810 0.82220 0.92566 0.90675 1.21536 0.96838 1.18386 0.96627 1.20914 0.93377 0.94532 0.97218 1.21594 1.00375 1.15137 0.93221 1.18165 0.85929 0.88030 0.92668 1.20638 0.96359 1.41253 0.93268 0.89851 1.27631 1.10248 0.88599 0.90766 1.70612 1.10142 1.31590 1.30415 0.82134 0.70738 0.76789 0.72678 1.21644 1.20729 1.25975 1.66125 1.08824 1.26223 1.31066 0.88669 0.88696 0.87435 0.91607 0.90921 0.91694 0.91962 0.92006 0.91584 0.91158 0.92015 0.90699 0.89633 0.92349 0.90638 0.91365 0.76097 0.84236 0.87729 0.87780 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 14.32 29.01 0.42 -0.94 16 2 C -0.15 -1.10 9.52 -36.03 -0.34 -1.45 16 3 C -0.10 -0.67 5.66 -27.88 -0.16 -0.83 16 4 C -0.11 -0.89 5.20 -26.73 -0.14 -1.03 16 5 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 6 C -0.14 -1.35 5.54 -26.73 -0.15 -1.49 16 7 C 0.14 1.41 5.41 -4.04 -0.02 1.39 16 8 N -0.63 -8.17 2.87 -187.35 -0.54 -8.71 16 9 C 0.08 0.71 10.25 59.85 0.61 1.33 16 10 C 0.71 12.67 8.12 -86.92 -0.71 11.96 16 11 O -0.56 -11.65 12.72 5.30 0.07 -11.58 16 12 N -0.67 -12.99 5.29 -15.79 -0.08 -13.08 16 13 C 0.40 9.46 7.51 -155.00 -1.16 8.30 16 14 C -0.31 -7.21 8.83 -38.89 -0.34 -7.55 16 15 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 16 C -0.28 -6.87 9.83 -38.65 -0.38 -7.25 16 17 C 0.28 7.40 6.27 -85.00 -0.53 6.86 16 18 C -0.48 -13.31 9.51 -37.73 -0.36 -13.67 16 19 H 0.08 2.29 8.06 -52.48 -0.42 1.86 16 20 C 0.05 1.34 5.51 -17.34 -0.10 1.25 16 21 N -0.81 -21.96 13.65 55.55 0.76 -21.20 16 22 Si 1.14 27.84 25.93 -169.99 -4.41 23.44 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -7.05 6.55 56.52 0.37 -6.68 16 25 H -0.33 -7.80 7.11 56.52 0.40 -7.40 16 26 N -0.60 -15.44 5.07 -10.26 -0.05 -15.49 16 27 H 0.09 0.56 8.06 -52.49 -0.42 0.14 16 28 H 0.09 0.58 7.84 -52.49 -0.41 0.16 16 29 H 0.11 0.76 8.06 -52.49 -0.42 0.33 16 30 H 0.07 0.42 7.79 -51.93 -0.40 0.02 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 39 H 0.09 1.03 7.42 -51.93 -0.39 0.64 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 42 H 0.07 0.68 6.28 -51.93 -0.33 0.35 16 43 H 0.40 6.92 6.52 -40.82 -0.27 6.65 16 44 H 0.14 3.21 5.33 -52.50 -0.28 2.93 16 45 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 46 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 47 H 0.28 7.42 8.73 -40.82 -0.36 7.06 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -31.62 384.61 -9.95 -41.58 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.59 Total: 4.62 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -3.90 Total: -5.36 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.08 Total: -58.48 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.58 kcal Atomic # 14 Polarization: 27.84 SS G_CDS: -4.41 Total: 23.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.62 -9.95 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.052 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds