Wall clock time and date at job start Tue Mar 31 2020 11:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99882 * 2 1 4 4 C 1.53001 * 109.47100 * 125.00241 * 3 2 1 5 5 C 1.52996 * 109.47132 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47132 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47132 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47122 * 180.02562 * 7 6 5 9 9 C 1.46511 * 119.99800 * 269.99722 * 8 7 6 10 10 C 1.34777 * 120.00516 * 89.99850 * 8 7 6 11 11 O 1.21571 * 119.99679 * 359.97438 * 10 8 7 12 12 N 1.34776 * 120.00254 * 180.02562 * 10 8 7 13 13 C 1.39244 * 120.00101 * 185.78748 * 12 10 8 14 14 C 1.39679 * 119.57521 * 18.75634 * 13 12 10 15 15 C 1.38642 * 119.49813 * 180.02562 * 14 13 12 16 16 C 1.38358 * 118.67020 * 359.74938 * 15 14 13 17 17 C 1.40579 * 119.12753 * 0.49374 * 16 15 14 18 18 C 1.41327 * 119.78337 * 179.76891 * 17 16 15 19 19 H 1.08004 * 120.00721 * 8.66160 * 18 17 16 20 20 C 1.40034 * 119.99606 * 188.65724 * 18 17 16 21 21 N 1.30745 * 119.99717 * 195.96432 * 20 18 17 22 22 Si 1.86794 * 120.00108 * 15.96891 * 20 18 17 23 23 H 1.48503 * 109.46844 * 269.99895 * 22 20 18 24 24 H 1.48495 * 109.47373 * 29.99380 * 22 20 18 25 25 H 1.48493 * 109.47617 * 149.99898 * 22 20 18 26 26 N 1.31903 * 119.57573 * 198.78736 * 13 12 10 27 27 H 1.07993 * 119.99950 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.99865 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99865 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47190 * 5.00048 * 3 2 1 31 31 H 1.09001 * 109.46637 * 244.99819 * 3 2 1 32 32 H 1.09004 * 109.47215 * 59.99412 * 4 3 2 33 33 H 1.08997 * 109.47244 * 300.00050 * 4 3 2 34 34 H 1.08998 * 109.47061 * 59.99868 * 5 4 3 35 35 H 1.08997 * 109.47049 * 299.99260 * 5 4 3 36 36 H 1.09004 * 109.47215 * 59.99552 * 6 5 4 37 37 H 1.08997 * 109.47244 * 300.00189 * 6 5 4 38 38 H 1.08996 * 109.47339 * 60.00330 * 7 6 5 39 39 H 1.09001 * 109.47467 * 299.99518 * 7 6 5 40 40 H 1.08997 * 109.47088 * 270.00030 * 9 8 7 41 41 H 1.09004 * 109.46806 * 30.00153 * 9 8 7 42 42 H 1.08999 * 109.47153 * 149.99875 * 9 8 7 43 43 H 0.97000 * 120.00065 * 5.78275 * 12 10 8 44 44 H 1.08003 * 120.25539 * 0.02562 * 14 13 12 45 45 H 1.08002 * 120.67118 * 180.02562 * 15 14 13 46 46 H 1.08001 * 120.43896 * 180.24697 * 16 15 14 47 47 H 0.96995 * 120.00284 * 354.92930 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8005 2.6578 1.1812 6 6 4.7716 2.6861 2.3632 7 6 5.5366 4.0111 2.3632 8 7 6.4669 4.0378 3.4946 9 6 6.0319 4.5709 4.7881 10 6 7.7228 3.5721 3.3457 11 8 8.0836 3.1294 2.2725 12 7 8.5785 3.5963 4.3867 13 6 9.9089 3.2286 4.2031 14 6 10.4498 3.2179 2.9154 15 6 11.7745 2.8510 2.7344 16 6 12.5263 2.5093 3.8445 17 6 11.9227 2.5348 5.1139 18 6 12.6764 2.1836 6.2567 19 1 13.7427 2.0331 6.1752 20 6 12.0404 2.0309 7.4949 21 7 12.7466 2.0174 8.5952 22 14 10.1833 1.8463 7.5746 23 1 9.5575 3.1873 7.6985 24 1 9.6978 1.1861 6.3363 25 1 9.8181 1.0189 8.7524 26 7 10.6419 2.8942 5.2475 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 3.7400 0.5065 1.0921 33 1 2.4774 1.2356 2.1130 34 1 3.0958 3.4846 1.2706 35 1 4.3584 2.7548 0.2499 36 1 5.4763 1.8592 2.2744 37 1 4.2135 2.5892 3.2944 38 1 4.8317 4.8376 2.4524 39 1 6.0948 4.1084 1.4321 40 1 6.2384 5.6404 4.8283 41 1 4.9618 4.4026 4.9092 42 1 6.5720 4.0663 5.5892 43 1 8.2675 3.8700 5.2638 44 1 9.8408 3.4934 2.0670 45 1 12.2122 2.8366 1.7471 46 1 13.5620 2.2229 3.7369 47 1 13.7152 2.0391 8.5501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881151781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:52 Heat of formation + Delta-G solvation = -10.606793 kcal Electronic energy + Delta-G solvation = -25755.860978 eV Core-core repulsion = 22130.774064 eV Total energy + Delta-G solvation = -3625.086914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.91970 -40.16643 -37.89266 -36.79777 -36.26619 -35.43602 -34.43954 -32.93860 -31.59576 -30.64329 -27.98231 -27.36328 -26.58506 -24.21163 -23.55719 -22.76764 -21.92287 -21.06500 -20.55946 -20.20100 -19.45005 -18.31551 -17.27144 -16.85136 -16.82246 -16.52296 -16.22745 -15.89248 -15.77635 -15.22173 -15.01418 -14.71079 -14.54894 -14.33525 -14.22989 -14.17190 -13.76987 -13.69516 -13.42427 -13.08478 -12.93903 -12.76094 -12.66681 -12.38757 -12.16769 -12.03696 -11.86136 -11.75014 -11.58303 -11.56111 -11.36396 -11.05680 -10.91022 -10.38165 -10.19590 -9.87330 -9.71835 -9.31193 -9.11879 -6.78225 0.60089 0.79326 1.37850 1.42798 1.51153 1.65022 1.96592 2.01309 2.40155 2.64986 2.74529 3.59365 3.79783 3.95904 4.07822 4.11898 4.15090 4.21417 4.27892 4.38247 4.42684 4.57496 4.61012 4.62932 4.70466 4.72132 4.75254 4.81963 4.84305 4.89895 4.97847 4.99463 5.05095 5.12883 5.28298 5.32502 5.38161 5.43707 5.46613 5.48546 5.56880 5.66129 5.78262 5.82841 5.91217 5.92349 6.03055 6.42669 6.59307 6.75266 7.36527 7.55343 7.93891 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.002543 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.904617 B =11007.002293 C =11392.003351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C -0.093 4.093 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.130 4.130 7 C 0.131 3.869 8 N -0.622 5.622 9 C 0.066 3.934 10 C 0.704 3.296 11 O -0.596 6.596 12 N -0.665 5.665 13 C 0.390 3.610 14 C -0.308 4.308 15 C -0.029 4.029 16 C -0.296 4.296 17 C 0.259 3.741 18 C -0.513 4.513 19 H 0.069 0.931 20 C 0.022 3.978 21 N -0.824 5.824 22 Si 1.175 2.825 23 H -0.272 1.272 24 H -0.295 1.295 25 H -0.320 1.320 26 N -0.609 5.609 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.412 0.588 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.114 0.886 47 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.117 4.150 -11.527 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.185 4.185 3 C -0.130 4.130 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.169 4.169 7 C 0.010 3.990 8 N -0.358 5.358 9 C -0.076 4.076 10 C 0.405 3.595 11 O -0.475 6.475 12 N -0.315 5.315 13 C 0.157 3.843 14 C -0.332 4.332 15 C -0.054 4.054 16 C -0.318 4.318 17 C 0.134 3.866 18 C -0.545 4.545 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.447 5.447 22 Si 1.005 2.995 23 H -0.198 1.198 24 H -0.223 1.223 25 H -0.252 1.252 26 N -0.334 5.334 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.251 0.749 44 H 0.164 0.836 45 H 0.160 0.840 46 H 0.133 0.867 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.400 3.794 -10.400 27.708 hybrid contribution 2.537 -0.154 -1.121 2.778 sum -22.863 3.640 -11.522 25.859 Atomic orbital electron populations 1.24008 0.95872 1.02503 1.01081 1.23119 0.96470 0.98909 1.00042 1.20773 0.98146 0.95352 0.98697 1.21495 0.97561 0.97503 0.98473 1.21466 0.97583 0.98177 0.97451 1.21919 0.97927 0.97113 0.99958 1.21593 0.90824 0.98820 0.87808 1.47215 1.09334 1.64505 1.14794 1.22094 1.03170 0.99790 0.82503 1.15897 0.81480 0.79014 0.83061 1.90792 1.76761 1.52763 1.27198 1.42463 1.07283 1.68666 1.13067 1.18129 0.83751 0.91918 0.90479 1.21851 0.97219 1.17299 0.96846 1.21310 0.92946 0.92707 0.98408 1.21764 1.01222 1.15824 0.93039 1.18369 0.86678 0.88196 0.93342 1.20639 0.95992 1.43629 0.94280 0.91256 1.28400 1.12413 0.88172 0.90607 1.70632 1.10143 1.33443 1.30529 0.81723 0.68300 0.77438 0.72037 1.19793 1.22344 1.25199 1.66118 1.08716 1.26544 1.32059 0.88041 0.87847 0.87795 0.90559 0.91025 0.93300 0.91793 0.89711 0.92162 0.94786 0.90804 0.86668 0.91469 0.90632 0.87258 0.91995 0.74885 0.83574 0.84036 0.86748 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.33 14.32 67.78 0.97 -1.36 16 2 C -0.17 -2.25 9.52 25.65 0.24 -2.01 16 3 C -0.09 -1.15 5.66 29.85 0.17 -0.98 16 4 C -0.11 -1.58 5.20 30.59 0.16 -1.42 16 5 C -0.11 -1.45 5.21 30.59 0.16 -1.29 16 6 C -0.13 -2.29 5.54 30.59 0.17 -2.12 16 7 C 0.13 2.38 5.41 86.38 0.47 2.85 16 8 N -0.62 -14.45 2.87 -864.91 -2.49 -16.94 16 9 C 0.07 1.01 10.25 127.77 1.31 2.32 16 10 C 0.70 24.15 8.12 179.05 1.45 25.61 16 11 O -0.60 -24.36 12.72 -3.94 -0.05 -24.41 16 12 N -0.67 -25.04 5.29 -322.13 -1.70 -26.75 16 13 C 0.39 18.17 7.51 133.26 1.00 19.17 16 14 C -0.31 -13.99 8.83 22.71 0.20 -13.79 16 15 C -0.03 -1.29 10.15 22.39 0.23 -1.06 16 16 C -0.30 -14.39 9.83 22.87 0.22 -14.17 16 17 C 0.26 14.01 6.27 40.19 0.25 14.26 16 18 C -0.51 -29.01 9.51 23.47 0.22 -28.79 16 19 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 20 C 0.02 1.20 5.51 85.29 0.47 1.67 16 21 N -0.82 -45.77 13.65 21.84 0.30 -45.47 16 22 Si 1.17 56.46 25.93 68.60 1.78 58.23 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.30 -14.81 6.55 99.48 0.65 -14.16 16 25 H -0.32 -14.81 7.11 99.48 0.71 -14.11 16 26 N -0.61 -31.31 5.07 -186.38 -0.95 -32.25 16 27 H 0.10 1.04 8.06 -2.91 -0.02 1.01 16 28 H 0.10 1.02 7.84 -2.91 -0.02 1.00 16 29 H 0.10 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.08 0.79 7.79 -2.39 -0.02 0.77 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.12 1.22 8.07 -2.39 -0.02 1.20 16 39 H 0.07 1.51 7.42 -2.39 -0.02 1.49 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.11 0.97 8.07 -2.38 -0.02 0.95 16 42 H 0.06 1.05 6.28 -2.39 -0.02 1.04 16 43 H 0.41 13.50 6.52 -92.71 -0.60 12.90 16 44 H 0.15 6.54 5.33 -3.17 -0.02 6.52 16 45 H 0.14 5.06 8.06 -2.91 -0.02 5.03 16 46 H 0.11 5.20 8.06 -2.91 -0.02 5.17 16 47 H 0.28 15.19 8.73 -92.71 -0.81 14.38 16 Total: -1.00 -69.35 384.61 4.84 -64.51 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.25 Total: 24.18 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 7.70 Total: -1.10 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -4.84 Total: -121.41 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 56.46 SS G_CDS: 1.78 Total: 58.23 kcal Total: -69.35 4.84 -64.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.903 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds