Wall clock time and date at job start Tue Mar 31 2020 11:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00107 * 2 1 4 4 C 1.52993 * 109.47328 * 90.00198 * 3 2 1 5 5 C 1.53000 * 109.47260 * 294.99774 * 4 3 2 6 6 C 1.53002 * 109.47429 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46878 * 60.00244 * 6 5 4 8 8 C 1.52995 * 109.47282 * 299.99772 * 7 6 5 9 9 C 1.53002 * 109.46978 * 60.00289 * 8 7 6 10 10 C 1.34779 * 119.99637 * 180.02562 * 2 1 3 11 11 O 1.21576 * 119.99956 * 179.97438 * 10 2 1 12 12 N 1.34777 * 120.00005 * 359.97438 * 10 2 1 13 13 C 1.39246 * 119.99729 * 174.79441 * 12 10 2 14 14 C 1.39685 * 119.57386 * 185.22532 * 13 12 10 15 15 C 1.38648 * 119.49325 * 179.72881 * 14 13 12 16 16 C 1.38348 * 118.67024 * 0.53073 * 15 14 13 17 17 C 1.40572 * 119.13552 * 359.73222 * 16 15 14 18 18 C 1.41331 * 119.78957 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99785 * 359.97429 * 18 17 16 20 20 C 1.40033 * 119.99756 * 179.97438 * 18 17 16 21 21 N 1.30740 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47457 * 89.99710 * 22 20 18 24 24 H 1.48504 * 109.47141 * 209.99570 * 22 20 18 25 25 H 1.48503 * 109.47572 * 329.99452 * 22 20 18 26 26 N 1.31903 * 119.57529 * 5.49432 * 13 12 10 27 27 H 1.08999 * 109.47117 * 270.00048 * 1 2 3 28 28 H 1.09002 * 109.47577 * 149.99895 * 1 2 3 29 29 H 1.08997 * 109.47141 * 29.99908 * 1 2 3 30 30 H 1.09004 * 109.47330 * 210.00310 * 3 2 1 31 31 H 1.09002 * 109.47602 * 329.99579 * 3 2 1 32 32 H 1.08998 * 109.47093 * 54.99926 * 4 3 2 33 33 H 1.08998 * 109.47192 * 300.00091 * 5 4 3 34 34 H 1.09004 * 109.46964 * 59.99482 * 5 4 3 35 35 H 1.09002 * 109.46778 * 299.99871 * 6 5 4 36 36 H 1.08999 * 109.47038 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.47034 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.47236 * 60.00100 * 7 6 5 39 39 H 1.09011 * 109.47315 * 300.00704 * 8 7 6 40 40 H 1.08996 * 109.47805 * 180.02562 * 8 7 6 41 41 H 1.08998 * 109.47333 * 180.02562 * 9 8 7 42 42 H 1.08998 * 109.47105 * 59.99939 * 9 8 7 43 43 H 0.96999 * 120.00409 * 354.79602 * 12 10 2 44 44 H 1.07996 * 120.25416 * 359.97438 * 14 13 12 45 45 H 1.08007 * 120.66024 * 180.24245 * 15 14 13 46 46 H 1.08005 * 120.43543 * 179.75123 * 16 15 14 47 47 H 0.96994 * 120.00166 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 1.4424 5 6 1.1181 2.0136 2.1265 6 6 1.3731 2.4546 3.5692 7 6 2.2446 3.7121 3.5715 8 6 3.5791 3.4090 2.8875 9 6 3.3241 2.9679 1.4448 10 6 2.1388 -1.1673 -0.0005 11 8 3.3546 -1.1673 -0.0010 12 7 1.4649 -2.3344 -0.0005 13 6 2.1567 -3.5378 -0.1105 14 6 1.4450 -4.7347 -0.2199 15 6 2.1356 -5.9315 -0.3350 16 6 3.5187 -5.9031 -0.3266 17 6 4.1772 -4.6669 -0.2079 18 6 5.5898 -4.6218 -0.1984 19 1 6.1597 -5.5353 -0.2817 20 6 6.2503 -3.3926 -0.0809 21 7 5.5602 -2.2867 0.0194 22 14 8.1172 -3.3330 -0.0690 23 1 8.6167 -3.1866 -1.4597 24 1 8.5703 -2.1759 0.7440 25 1 8.6490 -4.5890 0.5182 26 7 3.4758 -3.5334 -0.1046 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5138 30 1 3.1499 1.1383 -0.5139 31 1 1.6085 2.0284 -0.5139 32 1 2.9643 0.9130 1.9814 33 1 0.6063 2.8109 1.5875 34 1 0.4972 1.1176 2.1252 35 1 1.8845 1.6570 4.1080 36 1 0.4223 2.6702 4.0567 37 1 2.4267 4.0261 4.5993 38 1 1.7331 4.5097 3.0328 39 1 4.0907 2.6112 3.4263 40 1 4.2003 4.3046 2.8895 41 1 4.2748 2.7515 0.9576 42 1 2.8126 3.7655 0.9061 43 1 0.4979 -2.3362 0.0760 44 1 0.3651 -4.7277 -0.2190 45 1 1.6043 -6.8676 -0.4247 46 1 4.0852 -6.8188 -0.4105 47 1 6.0177 -1.4353 0.1012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881152487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:14 Heat of formation + Delta-G solvation = 17.595359 kcal Electronic energy + Delta-G solvation = -27521.697482 eV Core-core repulsion = 23897.833505 eV Total energy + Delta-G solvation = -3623.863977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.84454 -38.57934 -37.55107 -34.91411 -34.05402 -33.00703 -31.46482 -30.67902 -30.22246 -28.84088 -27.10544 -25.65845 -24.81109 -22.57643 -22.05633 -21.35641 -20.80219 -19.66844 -18.90081 -17.94365 -16.82748 -16.22423 -15.84963 -15.05299 -14.67736 -14.49503 -14.35314 -14.26053 -14.09532 -13.86147 -13.59680 -13.19511 -12.84991 -12.78209 -12.44047 -12.39324 -12.11089 -11.90633 -11.86367 -11.79025 -11.40386 -11.11906 -11.09728 -10.90546 -10.82610 -10.59731 -10.41627 -10.39818 -10.19838 -9.94559 -9.87148 -9.61712 -9.00015 -8.96468 -8.05170 -7.89051 -7.14885 -6.87905 -6.05359 -4.33561 2.89367 3.17563 3.20804 3.23149 3.23781 3.32002 4.11423 4.23889 4.49924 4.72010 4.78091 4.78098 5.00649 5.16103 5.22698 5.27258 5.36220 5.46933 5.53881 5.54399 5.57881 5.62217 5.68055 5.75740 5.96925 6.01885 6.06932 6.10536 6.13533 6.15006 6.21638 6.25329 6.28207 6.44196 6.51698 6.57376 6.66678 6.85718 6.90440 7.07351 7.27308 7.42360 7.67413 7.78546 7.86902 8.22291 8.33824 8.69222 8.84959 9.12082 9.65294 10.33243 10.55448 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.004510 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.987266 B = 6206.453554 C = 7956.640794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.642 5.642 3 C 0.146 3.854 4 C -0.104 4.104 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.110 4.110 10 C 0.666 3.334 11 O -0.458 6.458 12 N -0.673 5.673 13 C 0.387 3.613 14 C -0.359 4.359 15 C -0.036 4.036 16 C -0.308 4.308 17 C 0.271 3.729 18 C -0.426 4.426 19 H 0.081 0.919 20 C 0.057 3.943 21 N -0.647 5.647 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.264 1.264 26 N -0.471 5.471 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.394 0.606 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 12.547 3.248 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.384 5.384 3 C 0.022 3.978 4 C -0.123 4.123 5 C -0.150 4.150 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.156 4.156 9 C -0.148 4.148 10 C 0.366 3.634 11 O -0.322 6.322 12 N -0.323 5.323 13 C 0.147 3.853 14 C -0.386 4.386 15 C -0.060 4.060 16 C -0.331 4.331 17 C 0.146 3.854 18 C -0.456 4.456 19 H 0.099 0.901 20 C -0.173 4.173 21 N -0.265 5.265 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.189 5.189 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.229 0.771 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.858 13.618 3.322 16.070 hybrid contribution -0.439 -0.769 0.020 0.886 sum -8.298 12.849 3.342 15.656 Atomic orbital electron populations 1.21695 0.81644 1.02144 1.00789 1.47223 1.05285 1.05228 1.80680 1.21209 0.97546 0.83349 0.95698 1.21589 0.95913 0.97745 0.97099 1.21658 0.97356 1.00719 0.95241 1.21531 0.99232 0.97733 0.97242 1.21517 0.96249 0.97699 0.99990 1.21513 0.96925 1.00898 0.96308 1.21484 0.99899 0.96953 0.96480 1.16392 0.86543 0.80008 0.80507 1.91374 1.08380 1.83578 1.48845 1.42736 1.09096 1.04040 1.76444 1.18371 0.90947 0.82582 0.93420 1.20430 0.97371 0.92518 1.28235 1.20534 0.94090 0.95521 0.95844 1.21614 0.93858 0.98382 1.19260 1.18390 0.93467 0.85658 0.87848 1.19564 0.90096 0.93731 1.42241 0.90060 1.26181 0.99511 0.96052 0.95525 1.70345 1.35216 0.97760 1.23199 0.86566 0.84113 0.78741 0.78826 1.19726 1.20387 1.18815 1.68708 1.01791 1.28082 1.20349 0.93334 0.92101 0.91673 0.89839 0.91746 0.90347 0.92586 0.91694 0.92101 0.92552 0.92563 0.92326 0.91938 0.92371 0.91677 0.92354 0.77146 0.89285 0.88697 0.88656 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 9.21 59.85 0.55 1.45 16 2 N -0.64 -9.93 2.70 -187.36 -0.51 -10.44 16 3 C 0.15 2.03 4.92 -4.05 -0.02 2.01 16 4 C -0.10 -1.35 2.39 -90.62 -0.22 -1.57 16 5 C -0.11 -1.23 4.77 -26.73 -0.13 -1.36 16 6 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 7 C -0.12 -1.13 5.92 -26.74 -0.16 -1.28 16 8 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 9 C -0.11 -1.25 5.21 -26.73 -0.14 -1.39 16 10 C 0.67 14.02 8.24 -86.92 -0.72 13.31 16 11 O -0.46 -11.80 11.68 5.30 0.06 -11.74 16 12 N -0.67 -13.87 5.22 -15.79 -0.08 -13.96 16 13 C 0.39 9.69 7.43 -155.00 -1.15 8.54 16 14 C -0.36 -8.27 9.95 -38.89 -0.39 -8.66 16 15 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 16 C -0.31 -7.92 9.83 -38.66 -0.38 -8.30 16 17 C 0.27 7.78 6.55 -85.00 -0.56 7.23 16 18 C -0.43 -11.94 9.14 -37.73 -0.34 -12.28 16 19 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 20 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 21 N -0.65 -18.21 8.98 55.55 0.50 -17.71 16 22 Si 0.89 19.60 29.56 -169.99 -5.02 14.58 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 26 N -0.47 -13.50 5.74 -10.26 -0.06 -13.56 16 27 H 0.05 0.49 6.38 -51.93 -0.33 0.16 16 28 H 0.06 0.64 6.45 -51.93 -0.33 0.31 16 29 H 0.06 0.58 7.89 -51.93 -0.41 0.17 16 30 H 0.08 1.39 7.42 -51.93 -0.39 1.00 16 31 H 0.06 0.72 7.89 -51.93 -0.41 0.31 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.75 5.43 -51.93 -0.28 0.47 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.39 6.43 6.51 -40.82 -0.27 6.17 16 44 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 46 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 47 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -32.77 365.95 -11.51 -44.28 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.46 Total: 7.97 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -4.46 Total: -4.94 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.15 Total: -55.67 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.06 Total: -11.74 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.77 -11.51 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.880 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds