Wall clock time and date at job start Tue Mar 31 2020 11:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00107 * 2 1 4 4 C 1.52993 * 109.47328 * 90.00198 * 3 2 1 5 5 C 1.53000 * 109.47260 * 294.99774 * 4 3 2 6 6 C 1.53002 * 109.47429 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46878 * 60.00244 * 6 5 4 8 8 C 1.52995 * 109.47282 * 299.99772 * 7 6 5 9 9 C 1.53002 * 109.46978 * 60.00289 * 8 7 6 10 10 C 1.34779 * 119.99637 * 180.02562 * 2 1 3 11 11 O 1.21576 * 119.99956 * 179.97438 * 10 2 1 12 12 N 1.34777 * 120.00005 * 359.97438 * 10 2 1 13 13 C 1.39246 * 119.99729 * 174.79441 * 12 10 2 14 14 C 1.39685 * 119.57386 * 185.22532 * 13 12 10 15 15 C 1.38648 * 119.49325 * 179.72881 * 14 13 12 16 16 C 1.38348 * 118.67024 * 0.53073 * 15 14 13 17 17 C 1.40572 * 119.13552 * 359.73222 * 16 15 14 18 18 C 1.41331 * 119.78957 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99785 * 359.97429 * 18 17 16 20 20 C 1.40033 * 119.99756 * 179.97438 * 18 17 16 21 21 N 1.30740 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47457 * 89.99710 * 22 20 18 24 24 H 1.48504 * 109.47141 * 209.99570 * 22 20 18 25 25 H 1.48503 * 109.47572 * 329.99452 * 22 20 18 26 26 N 1.31903 * 119.57529 * 5.49432 * 13 12 10 27 27 H 1.08999 * 109.47117 * 270.00048 * 1 2 3 28 28 H 1.09002 * 109.47577 * 149.99895 * 1 2 3 29 29 H 1.08997 * 109.47141 * 29.99908 * 1 2 3 30 30 H 1.09004 * 109.47330 * 210.00310 * 3 2 1 31 31 H 1.09002 * 109.47602 * 329.99579 * 3 2 1 32 32 H 1.08998 * 109.47093 * 54.99926 * 4 3 2 33 33 H 1.08998 * 109.47192 * 300.00091 * 5 4 3 34 34 H 1.09004 * 109.46964 * 59.99482 * 5 4 3 35 35 H 1.09002 * 109.46778 * 299.99871 * 6 5 4 36 36 H 1.08999 * 109.47038 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.47034 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.47236 * 60.00100 * 7 6 5 39 39 H 1.09011 * 109.47315 * 300.00704 * 8 7 6 40 40 H 1.08996 * 109.47805 * 180.02562 * 8 7 6 41 41 H 1.08998 * 109.47333 * 180.02562 * 9 8 7 42 42 H 1.08998 * 109.47105 * 59.99939 * 9 8 7 43 43 H 0.96999 * 120.00409 * 354.79602 * 12 10 2 44 44 H 1.07996 * 120.25416 * 359.97438 * 14 13 12 45 45 H 1.08007 * 120.66024 * 180.24245 * 15 14 13 46 46 H 1.08005 * 120.43543 * 179.75123 * 16 15 14 47 47 H 0.96994 * 120.00166 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 1.4424 5 6 1.1181 2.0136 2.1265 6 6 1.3731 2.4546 3.5692 7 6 2.2446 3.7121 3.5715 8 6 3.5791 3.4090 2.8875 9 6 3.3241 2.9679 1.4448 10 6 2.1388 -1.1673 -0.0005 11 8 3.3546 -1.1673 -0.0010 12 7 1.4649 -2.3344 -0.0005 13 6 2.1567 -3.5378 -0.1105 14 6 1.4450 -4.7347 -0.2199 15 6 2.1356 -5.9315 -0.3350 16 6 3.5187 -5.9031 -0.3266 17 6 4.1772 -4.6669 -0.2079 18 6 5.5898 -4.6218 -0.1984 19 1 6.1597 -5.5353 -0.2817 20 6 6.2503 -3.3926 -0.0809 21 7 5.5602 -2.2867 0.0194 22 14 8.1172 -3.3330 -0.0690 23 1 8.6167 -3.1866 -1.4597 24 1 8.5703 -2.1759 0.7440 25 1 8.6490 -4.5890 0.5182 26 7 3.4758 -3.5334 -0.1046 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5138 30 1 3.1499 1.1383 -0.5139 31 1 1.6085 2.0284 -0.5139 32 1 2.9643 0.9130 1.9814 33 1 0.6063 2.8109 1.5875 34 1 0.4972 1.1176 2.1252 35 1 1.8845 1.6570 4.1080 36 1 0.4223 2.6702 4.0567 37 1 2.4267 4.0261 4.5993 38 1 1.7331 4.5097 3.0328 39 1 4.0907 2.6112 3.4263 40 1 4.2003 4.3046 2.8895 41 1 4.2748 2.7515 0.9576 42 1 2.8126 3.7655 0.9061 43 1 0.4979 -2.3362 0.0760 44 1 0.3651 -4.7277 -0.2190 45 1 1.6043 -6.8676 -0.4247 46 1 4.0852 -6.8188 -0.4105 47 1 6.0177 -1.4353 0.1012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881152487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:14 Heat of formation + Delta-G solvation = -0.144093 kcal Electronic energy + Delta-G solvation = -27522.466722 eV Core-core repulsion = 23897.833505 eV Total energy + Delta-G solvation = -3624.633217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34700 -39.96421 -39.07514 -36.27880 -35.86646 -34.87081 -32.57576 -32.17181 -31.58497 -30.67328 -28.11350 -27.52927 -26.17021 -23.70958 -23.44877 -23.09228 -22.16037 -20.59944 -20.51445 -19.67135 -18.45289 -17.96375 -16.95364 -16.61755 -16.26976 -16.05585 -15.85836 -15.63650 -15.22015 -15.04563 -14.88089 -14.65071 -14.52654 -14.17530 -13.74256 -13.67925 -13.35485 -13.33695 -12.95337 -12.88214 -12.75120 -12.71435 -12.54992 -12.43744 -12.29145 -11.98722 -11.78901 -11.75877 -11.51691 -11.34478 -11.12057 -10.88655 -10.84268 -10.70423 -9.87873 -9.35344 -9.08132 -8.74869 -8.00854 -6.40248 0.97867 1.29579 1.37967 1.50337 1.53016 1.82100 2.26359 2.58487 3.05009 3.13611 3.77757 3.86503 3.89479 4.08805 4.17188 4.33804 4.35152 4.37948 4.44333 4.55161 4.58420 4.66218 4.67138 4.71068 4.74010 4.81132 4.85191 4.92436 4.97593 4.98828 5.07087 5.08191 5.16958 5.25820 5.27945 5.30226 5.33274 5.41176 5.51970 5.60287 5.67273 5.83372 5.88171 5.95000 6.05728 6.27588 6.42303 6.83454 7.07784 7.18877 8.03786 8.40166 8.59474 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.004510 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.987266 B = 6206.453554 C = 7956.640794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.633 5.633 3 C 0.146 3.854 4 C -0.095 4.095 5 C -0.105 4.105 6 C -0.121 4.121 7 C -0.112 4.112 8 C -0.120 4.120 9 C -0.107 4.107 10 C 0.655 3.345 11 O -0.513 6.513 12 N -0.663 5.663 13 C 0.364 3.636 14 C -0.347 4.347 15 C -0.033 4.033 16 C -0.332 4.332 17 C 0.237 3.763 18 C -0.467 4.467 19 H 0.085 0.915 20 C 0.010 3.990 21 N -0.682 5.682 22 Si 0.972 3.028 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.255 1.255 26 N -0.506 5.506 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.025 0.975 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.414 0.586 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.104 0.896 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.005 13.931 3.192 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.373 5.373 3 C 0.022 3.978 4 C -0.116 4.116 5 C -0.142 4.142 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.157 4.157 9 C -0.145 4.145 10 C 0.355 3.645 11 O -0.381 6.381 12 N -0.315 5.315 13 C 0.124 3.876 14 C -0.373 4.373 15 C -0.057 4.057 16 C -0.355 4.355 17 C 0.112 3.888 18 C -0.498 4.498 19 H 0.103 0.897 20 C -0.216 4.216 21 N -0.301 5.301 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.178 1.178 26 N -0.226 5.226 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.253 0.747 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.122 0.878 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.631 15.024 3.270 18.693 hybrid contribution 0.177 -1.216 0.035 1.229 sum -10.454 13.808 3.305 17.631 Atomic orbital electron populations 1.22018 0.78240 1.04157 1.02418 1.47169 1.07319 1.03753 1.79076 1.21332 0.96614 0.83502 0.96321 1.21451 0.97265 0.96803 0.96032 1.21613 0.95628 1.01426 0.95559 1.21543 1.00086 0.97421 0.96786 1.21501 0.95158 0.97667 1.00628 1.21523 0.98051 1.00597 0.95570 1.21466 0.98933 0.96847 0.97259 1.16741 0.86313 0.81296 0.80177 1.91359 1.11007 1.84628 1.51121 1.42594 1.09931 1.02936 1.76005 1.18892 0.90628 0.84843 0.93252 1.20909 0.99433 0.91574 1.25379 1.21018 0.93259 0.97487 0.93944 1.21803 0.95456 0.97779 1.20477 1.18888 0.94385 0.86975 0.88584 1.19888 0.90748 0.94570 1.44584 0.89673 1.27042 1.04659 0.95259 0.94660 1.70570 1.37012 0.97975 1.24548 0.85376 0.77456 0.78911 0.78988 1.19033 1.20030 1.17832 1.68675 1.03784 1.28713 1.21390 0.91795 0.91494 0.88327 0.93585 0.87616 0.95672 0.89790 0.92202 0.94644 0.90599 0.91738 0.90339 0.94479 0.90904 0.93713 0.89642 0.74725 0.85140 0.84422 0.87784 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 9.21 127.77 1.18 2.58 16 2 N -0.63 -19.26 2.70 -864.94 -2.33 -21.60 16 3 C 0.15 4.04 4.92 86.38 0.43 4.46 16 4 C -0.10 -2.53 2.39 -10.79 -0.03 -2.56 16 5 C -0.11 -2.08 4.77 30.59 0.15 -1.93 16 6 C -0.12 -2.33 5.92 30.59 0.18 -2.15 16 7 C -0.11 -1.91 5.92 30.59 0.18 -1.73 16 8 C -0.12 -2.51 5.92 30.59 0.18 -2.33 16 9 C -0.11 -2.42 5.21 30.60 0.16 -2.26 16 10 C 0.66 28.45 8.24 179.05 1.47 29.93 16 11 O -0.51 -28.26 11.68 -3.96 -0.05 -28.31 16 12 N -0.66 -27.29 5.22 -322.12 -1.68 -28.97 16 13 C 0.36 18.42 7.43 133.26 0.99 19.41 16 14 C -0.35 -15.34 9.95 22.72 0.23 -15.11 16 15 C -0.03 -1.47 10.15 22.39 0.23 -1.25 16 16 C -0.33 -17.33 9.83 22.87 0.22 -17.10 16 17 C 0.24 14.20 6.55 40.19 0.26 14.46 16 18 C -0.47 -27.55 9.14 23.47 0.21 -27.33 16 19 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 20 C 0.01 0.54 5.50 85.29 0.47 1.01 16 21 N -0.68 -41.01 8.98 21.84 0.20 -40.81 16 22 Si 0.97 42.31 29.56 68.60 2.03 44.34 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 26 N -0.51 -30.32 5.74 -186.37 -1.07 -31.39 16 27 H 0.06 1.07 6.38 -2.39 -0.02 1.05 16 28 H 0.07 1.21 6.45 -2.39 -0.02 1.19 16 29 H 0.10 1.28 7.89 -2.39 -0.02 1.26 16 30 H 0.05 1.63 7.42 -2.38 -0.02 1.61 16 31 H 0.11 2.06 7.89 -2.39 -0.02 2.04 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.25 5.43 -2.39 -0.01 1.23 16 35 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.41 12.82 6.51 -92.71 -0.60 12.22 16 44 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 45 H 0.14 4.91 8.06 -2.91 -0.02 4.89 16 46 H 0.10 5.05 8.06 -2.91 -0.02 5.03 16 47 H 0.27 15.27 8.29 -92.71 -0.77 14.51 16 Total: -1.00 -78.56 365.95 3.97 -74.59 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.36 Total: 34.05 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 6.51 Total: -1.90 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -4.89 Total: -122.77 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.05 Total: -28.31 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -78.56 3.97 -74.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.445 kcal (2) G-P(sol) polarization free energy of solvation -78.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds