Wall clock time and date at job start Tue Mar 31 2020 11:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34943 * 126.03687 * 2 1 4 4 C 1.35319 * 107.74696 * 180.14699 * 3 2 1 5 5 C 1.50694 * 126.04170 * 179.87107 * 4 3 2 6 6 C 1.52453 * 109.28589 * 239.72009 * 5 4 3 7 7 C 1.53706 * 108.98894 * 185.89747 * 6 5 4 8 8 H 1.09000 * 112.58298 * 188.08582 * 7 6 5 9 9 C 1.54603 * 107.82853 * 312.38716 * 7 6 5 10 10 C 1.54316 * 104.75381 * 88.66406 * 9 7 6 11 11 C 1.54992 * 104.70868 * 359.82488 * 10 9 7 12 12 H 1.09006 * 112.26287 * 146.98443 * 11 10 9 13 13 C 1.53140 * 109.43497 * 119.71460 * 5 4 3 14 14 N 1.48291 * 104.07420 * 25.40559 * 11 10 9 15 15 C 1.34774 * 128.21611 * 138.36201 * 14 11 10 16 16 O 1.21273 * 120.00504 * 179.67965 * 15 14 11 17 17 C 1.50702 * 119.99687 * 359.68735 * 15 14 11 18 18 C 1.53001 * 109.47327 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.46995 * 179.97438 * 18 17 15 20 20 H 1.07991 * 120.00449 * 359.72153 * 19 18 17 21 21 C 1.37885 * 119.99686 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.72095 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.72528 * 21 19 18 24 24 H 1.48493 * 109.47326 * 90.00142 * 23 21 19 25 25 H 1.48506 * 109.46545 * 209.99892 * 23 21 19 26 26 H 1.48498 * 109.47210 * 329.99603 * 23 21 19 27 27 C 1.39876 * 107.91739 * 359.61181 * 4 3 2 28 28 N 1.30835 * 108.20231 * 0.23534 * 27 4 3 29 29 H 1.09000 * 109.47037 * 270.31125 * 1 2 3 30 30 H 1.08996 * 109.46995 * 30.31062 * 1 2 3 31 31 H 1.08998 * 109.47176 * 150.31621 * 1 2 3 32 32 H 1.08007 * 126.12720 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.43434 * 359.80195 * 5 4 3 34 34 H 1.09001 * 109.38747 * 66.12254 * 6 5 4 35 35 H 1.08996 * 109.64472 * 305.82627 * 6 5 4 36 36 H 1.09006 * 110.38409 * 207.48226 * 9 7 6 37 37 H 1.09003 * 110.38939 * 329.84299 * 9 7 6 38 38 H 1.08991 * 110.38638 * 118.81677 * 10 9 7 39 39 H 1.09007 * 110.37901 * 241.07005 * 10 9 7 40 40 H 1.09004 * 109.57275 * 54.14414 * 13 5 4 41 41 H 1.09005 * 109.67380 * 293.83926 * 13 5 4 42 42 H 1.08998 * 109.47519 * 59.99364 * 17 15 14 43 43 H 1.09006 * 109.47270 * 299.99595 * 17 15 14 44 44 H 1.08998 * 109.47065 * 59.99424 * 18 17 15 45 45 H 1.09001 * 109.46892 * 299.99688 * 18 17 15 46 46 H 0.97000 * 119.99651 * 180.02562 * 22 21 19 47 47 H 1.07990 * 125.89871 * 180.26807 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0073 6 6 5.5967 1.2486 -1.2520 7 6 6.9133 2.0381 -1.1762 8 1 7.4896 1.9807 -2.0996 9 6 6.5698 3.4957 -0.7919 10 6 6.5759 3.5070 0.7512 11 6 6.9190 2.0503 1.1542 12 1 7.5000 2.0025 2.0753 13 6 5.6029 1.2616 1.2448 14 7 7.6699 1.5215 -0.0101 15 6 8.7748 0.7496 -0.0089 16 8 9.2675 0.3944 -1.0585 17 6 9.3978 0.3278 1.2969 18 6 10.6294 -0.5363 1.0188 19 6 11.2527 -0.9575 2.3246 20 1 10.8169 -0.6369 3.2592 21 6 12.3825 -1.7479 2.3259 22 7 12.9129 -2.1387 1.1877 23 14 13.1595 -2.2637 3.9444 24 1 12.5630 -3.5474 4.3931 25 1 14.6227 -2.4361 3.7581 26 1 12.9108 -1.2175 4.9685 27 6 3.5347 -0.7322 0.0036 28 7 2.2892 -1.1328 0.0057 29 1 -0.3633 0.0056 1.0277 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3633 -0.8928 -0.5089 32 1 1.9281 2.1194 -0.0004 33 1 4.4633 2.5918 -0.0106 34 1 5.0396 1.5521 -2.1384 35 1 5.8133 0.1816 -1.3024 36 1 7.3256 4.1788 -1.1795 37 1 5.5835 3.7656 -1.1696 38 1 7.3346 4.1956 1.1228 39 1 5.5931 3.7844 1.1327 40 1 5.8198 0.1951 1.3052 41 1 5.0512 1.5727 2.1320 42 1 8.6746 -0.2466 1.8758 43 1 9.6940 1.2125 1.8607 44 1 11.3527 0.0378 0.4397 45 1 10.3328 -1.4209 0.4553 46 1 13.7075 -2.6951 1.1887 47 1 4.4054 -1.3710 0.0072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882689638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:01 Heat of formation + Delta-G solvation = 36.731308 kcal Electronic energy + Delta-G solvation = -26877.116417 eV Core-core repulsion = 23254.082237 eV Total energy + Delta-G solvation = -3623.034180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62749 -40.57512 -37.90210 -34.33458 -33.42457 -32.64608 -31.74404 -31.12860 -30.49643 -29.63743 -26.85460 -25.78824 -24.21363 -24.02721 -22.00952 -21.33963 -20.83713 -20.28817 -19.60306 -17.99253 -17.30098 -16.80450 -15.93197 -15.79420 -15.66031 -14.73595 -14.63975 -14.57139 -14.34635 -13.84050 -13.57809 -13.48611 -13.34552 -13.20526 -12.90715 -12.72505 -12.58803 -12.55518 -12.19933 -12.13765 -11.76850 -11.41526 -11.17242 -11.04357 -10.89570 -10.76298 -10.59021 -10.54531 -10.40412 -10.34841 -9.89872 -9.59961 -9.58853 -9.10965 -8.92332 -8.50788 -8.33956 -8.25389 -5.91937 -3.96029 1.69485 2.31853 2.65003 3.30039 3.34181 3.36275 3.42352 3.45111 4.22927 4.44305 4.51140 4.58190 4.61790 4.75555 4.78919 4.89753 5.02915 5.05322 5.06837 5.12056 5.13251 5.28958 5.33320 5.42932 5.43341 5.52919 5.57521 5.69667 5.81276 5.82166 5.88098 5.96321 6.02312 6.07775 6.12673 6.18612 6.30008 6.31299 6.41534 6.51389 6.66067 6.79661 6.98515 7.52720 7.79196 7.91995 8.05242 8.12551 8.43590 8.85720 9.12719 9.67161 11.19072 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.002970 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.769236 B = 9425.918877 C =10314.288674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.382 5.382 3 C 0.051 3.949 4 C -0.223 4.223 5 C -0.005 4.005 6 C -0.117 4.117 7 C 0.130 3.870 8 H 0.097 0.903 9 C -0.130 4.130 10 C -0.130 4.130 11 C 0.130 3.870 12 H 0.101 0.899 13 C -0.120 4.120 14 N -0.625 5.625 15 C 0.532 3.468 16 O -0.535 6.535 17 C -0.124 4.124 18 C 0.037 3.963 19 C -0.525 4.525 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.058 3.942 28 N -0.299 5.299 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.171 0.829 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.023 0.977 45 H 0.023 0.977 46 H 0.260 0.740 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.383 13.130 -1.820 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.164 5.164 3 C -0.095 4.095 4 C -0.235 4.235 5 C -0.024 4.024 6 C -0.155 4.155 7 C 0.026 3.974 8 H 0.115 0.885 9 C -0.169 4.169 10 C -0.169 4.169 11 C 0.025 3.975 12 H 0.119 0.881 13 C -0.158 4.158 14 N -0.361 5.361 15 C 0.324 3.676 16 O -0.411 6.411 17 C -0.164 4.164 18 C 0.000 4.000 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.128 4.128 28 N -0.120 5.120 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.188 0.812 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.041 0.959 45 H 0.042 0.958 46 H 0.070 0.930 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -26.803 11.727 -2.469 29.360 hybrid contribution 0.846 0.373 0.905 1.293 sum -25.957 12.100 -1.564 28.682 Atomic orbital electron populations 1.21808 0.74497 1.04317 1.03201 1.48448 1.06495 1.03971 1.57515 1.22289 0.90852 0.93204 1.03140 1.20116 0.94115 0.93988 1.15237 1.19439 0.90600 0.97483 0.94911 1.21970 0.94987 1.01233 0.97355 1.22129 0.91659 0.92138 0.91425 0.88521 1.22604 1.01809 0.96513 0.95931 1.22675 1.01974 0.96364 0.95841 1.22320 0.92011 0.92423 0.90711 0.88101 1.22128 0.94982 1.01266 0.97435 1.49475 1.27350 1.52095 1.07224 1.21243 0.77505 0.75877 0.92988 1.90669 1.61345 1.54592 1.34470 1.21833 1.00632 1.01490 0.92405 1.18902 0.90001 0.94380 0.96745 1.21217 1.11092 1.31510 0.92535 0.92647 1.25026 0.97048 0.96179 0.96149 1.70002 1.21822 1.35926 1.25105 0.86602 0.78496 0.78930 0.83988 1.20683 1.21249 1.19902 1.23822 0.95007 0.94867 0.99081 1.77392 1.01831 1.08123 1.24624 0.90924 0.89661 0.89426 0.81227 0.90252 0.91419 0.91253 0.91390 0.90569 0.91193 0.90490 0.91080 0.91084 0.90423 0.90491 0.95904 0.95835 0.92986 0.80184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.47 59.85 0.69 1.21 16 2 N -0.38 -3.58 4.01 -68.16 -0.27 -3.86 16 3 C 0.05 0.42 11.38 -17.22 -0.20 0.22 16 4 C -0.22 -2.19 4.79 -105.05 -0.50 -2.70 16 5 C 0.00 -0.04 2.18 -91.98 -0.20 -0.24 16 6 C -0.12 -1.27 4.80 -26.64 -0.13 -1.40 16 7 C 0.13 1.62 4.12 -65.73 -0.27 1.35 16 8 H 0.10 1.38 7.93 -51.93 -0.41 0.97 16 9 C -0.13 -1.20 5.98 -25.20 -0.15 -1.35 16 10 C -0.13 -1.14 6.00 -24.99 -0.15 -1.29 16 11 C 0.13 1.45 4.01 -65.53 -0.26 1.19 16 12 H 0.10 1.13 7.43 -51.93 -0.39 0.75 16 13 C -0.12 -1.20 4.85 -26.29 -0.13 -1.33 16 14 N -0.63 -9.37 2.76 -152.97 -0.42 -9.79 16 15 C 0.53 10.75 7.93 -10.99 -0.09 10.67 16 16 O -0.54 -13.15 16.30 5.56 0.09 -13.06 16 17 C -0.12 -2.61 4.63 -27.88 -0.13 -2.73 16 18 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 19 C -0.53 -15.12 9.11 -34.44 -0.31 -15.44 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 23 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 27 C 0.06 0.69 11.20 -17.36 -0.19 0.49 16 28 N -0.30 -3.73 12.58 30.62 0.39 -3.35 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.17 0.81 8.06 -52.48 -0.42 0.38 16 33 H 0.08 0.58 5.49 -51.93 -0.29 0.30 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.54 7.03 -51.93 -0.37 0.18 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.51 7.06 -51.92 -0.37 0.15 16 40 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 44 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 45 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -36.89 374.17 -8.77 -45.66 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.66 Total: -2.24 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.24 Total: -8.84 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.43 Total: -44.08 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.89 -8.77 -45.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882689638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.392 kcal (2) G-P(sol) polarization free energy of solvation -36.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds