Wall clock time and date at job start Tue Mar 31 2020 11:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34943 * 126.03687 * 2 1 4 4 C 1.35319 * 107.74696 * 180.14699 * 3 2 1 5 5 C 1.50694 * 126.04170 * 179.87107 * 4 3 2 6 6 C 1.52453 * 109.28589 * 239.72009 * 5 4 3 7 7 C 1.53706 * 108.98894 * 185.89747 * 6 5 4 8 8 H 1.09000 * 112.58298 * 188.08582 * 7 6 5 9 9 C 1.54603 * 107.82853 * 312.38716 * 7 6 5 10 10 C 1.54316 * 104.75381 * 88.66406 * 9 7 6 11 11 C 1.54992 * 104.70868 * 359.82488 * 10 9 7 12 12 H 1.09006 * 112.26287 * 146.98443 * 11 10 9 13 13 C 1.53140 * 109.43497 * 119.71460 * 5 4 3 14 14 N 1.48291 * 104.07420 * 25.40559 * 11 10 9 15 15 C 1.34774 * 128.21611 * 138.36201 * 14 11 10 16 16 O 1.21273 * 120.00504 * 179.67965 * 15 14 11 17 17 C 1.50702 * 119.99687 * 359.68735 * 15 14 11 18 18 C 1.53001 * 109.47327 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.46995 * 179.97438 * 18 17 15 20 20 H 1.07991 * 120.00449 * 359.72153 * 19 18 17 21 21 C 1.37885 * 119.99686 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.72095 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.72528 * 21 19 18 24 24 H 1.48493 * 109.47326 * 90.00142 * 23 21 19 25 25 H 1.48506 * 109.46545 * 209.99892 * 23 21 19 26 26 H 1.48498 * 109.47210 * 329.99603 * 23 21 19 27 27 C 1.39876 * 107.91739 * 359.61181 * 4 3 2 28 28 N 1.30835 * 108.20231 * 0.23534 * 27 4 3 29 29 H 1.09000 * 109.47037 * 270.31125 * 1 2 3 30 30 H 1.08996 * 109.46995 * 30.31062 * 1 2 3 31 31 H 1.08998 * 109.47176 * 150.31621 * 1 2 3 32 32 H 1.08007 * 126.12720 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.43434 * 359.80195 * 5 4 3 34 34 H 1.09001 * 109.38747 * 66.12254 * 6 5 4 35 35 H 1.08996 * 109.64472 * 305.82627 * 6 5 4 36 36 H 1.09006 * 110.38409 * 207.48226 * 9 7 6 37 37 H 1.09003 * 110.38939 * 329.84299 * 9 7 6 38 38 H 1.08991 * 110.38638 * 118.81677 * 10 9 7 39 39 H 1.09007 * 110.37901 * 241.07005 * 10 9 7 40 40 H 1.09004 * 109.57275 * 54.14414 * 13 5 4 41 41 H 1.09005 * 109.67380 * 293.83926 * 13 5 4 42 42 H 1.08998 * 109.47519 * 59.99364 * 17 15 14 43 43 H 1.09006 * 109.47270 * 299.99595 * 17 15 14 44 44 H 1.08998 * 109.47065 * 59.99424 * 18 17 15 45 45 H 1.09001 * 109.46892 * 299.99688 * 18 17 15 46 46 H 0.97000 * 119.99651 * 180.02562 * 22 21 19 47 47 H 1.07990 * 125.89871 * 180.26807 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0073 6 6 5.5967 1.2486 -1.2520 7 6 6.9133 2.0381 -1.1762 8 1 7.4896 1.9807 -2.0996 9 6 6.5698 3.4957 -0.7919 10 6 6.5759 3.5070 0.7512 11 6 6.9190 2.0503 1.1542 12 1 7.5000 2.0025 2.0753 13 6 5.6029 1.2616 1.2448 14 7 7.6699 1.5215 -0.0101 15 6 8.7748 0.7496 -0.0089 16 8 9.2675 0.3944 -1.0585 17 6 9.3978 0.3278 1.2969 18 6 10.6294 -0.5363 1.0188 19 6 11.2527 -0.9575 2.3246 20 1 10.8169 -0.6369 3.2592 21 6 12.3825 -1.7479 2.3259 22 7 12.9129 -2.1387 1.1877 23 14 13.1595 -2.2637 3.9444 24 1 12.5630 -3.5474 4.3931 25 1 14.6227 -2.4361 3.7581 26 1 12.9108 -1.2175 4.9685 27 6 3.5347 -0.7322 0.0036 28 7 2.2892 -1.1328 0.0057 29 1 -0.3633 0.0056 1.0277 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3633 -0.8928 -0.5089 32 1 1.9281 2.1194 -0.0004 33 1 4.4633 2.5918 -0.0106 34 1 5.0396 1.5521 -2.1384 35 1 5.8133 0.1816 -1.3024 36 1 7.3256 4.1788 -1.1795 37 1 5.5835 3.7656 -1.1696 38 1 7.3346 4.1956 1.1228 39 1 5.5931 3.7844 1.1327 40 1 5.8198 0.1951 1.3052 41 1 5.0512 1.5727 2.1320 42 1 8.6746 -0.2466 1.8758 43 1 9.6940 1.2125 1.8607 44 1 11.3527 0.0378 0.4397 45 1 10.3328 -1.4209 0.4553 46 1 13.7075 -2.6951 1.1887 47 1 4.4054 -1.3710 0.0072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882689638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:00 Heat of formation + Delta-G solvation = 12.755243 kcal Electronic energy + Delta-G solvation = -26878.156097 eV Core-core repulsion = 23254.082237 eV Total energy + Delta-G solvation = -3624.073860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.42051 -41.55178 -39.43428 -35.58947 -35.12837 -33.57000 -33.11750 -32.12362 -32.06426 -30.33620 -27.90548 -27.32082 -25.19687 -25.03653 -23.61985 -22.24543 -21.78252 -21.20457 -20.69513 -19.20778 -18.74594 -17.96816 -17.47616 -16.77161 -16.50413 -16.29837 -16.15217 -15.98950 -15.27825 -14.84750 -14.67946 -14.42927 -14.19200 -14.03356 -14.00629 -13.94348 -13.65616 -13.64124 -13.27674 -13.24242 -13.16885 -12.82669 -12.53711 -12.45204 -12.33915 -11.95878 -11.95152 -11.66351 -11.57983 -11.38443 -11.30924 -11.20356 -11.13114 -10.64244 -10.58032 -10.31908 -9.55614 -9.21339 -8.18795 -6.33377 1.02571 1.40812 1.44348 1.55247 1.72004 1.77652 1.86460 2.07026 2.42798 3.13801 3.54658 3.62698 3.72194 4.03266 4.06749 4.08061 4.18891 4.23497 4.33098 4.37696 4.40340 4.45714 4.48165 4.48982 4.50932 4.58245 4.73249 4.73749 4.79216 4.90109 4.94231 5.06521 5.09699 5.13007 5.18848 5.22804 5.26262 5.29768 5.39355 5.47224 5.60251 5.61954 5.67121 5.73601 5.83360 6.16165 6.25668 6.68001 6.78702 6.85349 7.30869 7.37094 8.94174 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.002970 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.769236 B = 9425.918877 C =10314.288674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.070 3.930 4 C -0.239 4.239 5 C 0.009 3.991 6 C -0.110 4.110 7 C 0.117 3.883 8 H 0.066 0.934 9 C -0.120 4.120 10 C -0.120 4.120 11 C 0.117 3.883 12 H 0.102 0.898 13 C -0.115 4.115 14 N -0.618 5.618 15 C 0.527 3.473 16 O -0.598 6.598 17 C -0.110 4.110 18 C 0.045 3.955 19 C -0.542 4.542 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.939 5.939 23 Si 0.976 3.024 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.254 1.254 27 C 0.036 3.964 28 N -0.344 5.344 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.218 0.782 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.040 0.960 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.100 0.900 44 H -0.019 1.019 45 H -0.022 1.022 46 H 0.263 0.737 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.711 16.524 0.709 34.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.165 5.165 3 C -0.076 4.076 4 C -0.250 4.250 5 C -0.011 4.011 6 C -0.148 4.148 7 C 0.014 3.986 8 H 0.084 0.916 9 C -0.158 4.158 10 C -0.158 4.158 11 C 0.015 3.985 12 H 0.120 0.880 13 C -0.154 4.154 14 N -0.352 5.352 15 C 0.318 3.682 16 O -0.479 6.479 17 C -0.149 4.149 18 C 0.007 3.993 19 C -0.580 4.580 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.579 5.579 23 Si 0.799 3.201 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.177 1.177 27 C -0.148 4.148 28 N -0.167 5.167 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.100 0.900 32 H 0.234 0.766 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.059 0.941 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.118 0.882 44 H -0.001 1.001 45 H -0.003 1.003 46 H 0.072 0.928 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -30.212 15.161 0.094 33.802 hybrid contribution 1.754 -0.685 0.047 1.883 sum -28.458 14.476 0.141 31.929 Atomic orbital electron populations 1.22172 0.72168 1.05809 1.04499 1.48827 1.07883 1.03521 1.56262 1.22960 0.89820 0.94668 1.00200 1.20169 0.95294 0.92834 1.16738 1.19383 0.89633 0.99245 0.92792 1.21908 0.94563 0.98696 0.99674 1.22405 0.91508 0.95206 0.89441 0.91565 1.22609 1.03651 0.93020 0.96540 1.22704 1.04270 0.93801 0.95061 1.22748 0.91948 0.94581 0.89244 0.88012 1.22110 0.94663 0.99339 0.99270 1.49408 1.25644 1.49817 1.10330 1.20962 0.78935 0.76634 0.91635 1.90634 1.63810 1.57466 1.35984 1.21547 0.98370 1.01402 0.93601 1.18666 0.91854 0.93148 0.95591 1.21686 1.11444 1.31533 0.93336 0.90616 1.26180 0.97733 0.96029 1.00606 1.70192 1.22503 1.36844 1.28314 0.85291 0.77072 0.79062 0.78644 1.19710 1.21034 1.17718 1.23801 0.94663 0.96326 1.00057 1.77313 1.02490 1.10407 1.26445 0.89709 0.86193 0.89967 0.76551 0.86493 0.89619 0.94967 0.91741 0.86932 0.90853 0.86569 0.94069 0.88398 0.88666 0.88218 1.00092 1.00311 0.92828 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.47 127.77 1.47 2.11 16 2 N -0.38 -6.20 4.01 -369.55 -1.48 -7.68 16 3 C 0.07 0.86 11.38 83.54 0.95 1.81 16 4 C -0.24 -4.14 4.79 -20.14 -0.10 -4.24 16 5 C 0.01 0.13 2.18 -11.68 -0.03 0.10 16 6 C -0.11 -2.31 4.80 30.65 0.15 -2.16 16 7 C 0.12 2.90 4.12 45.43 0.19 3.09 16 8 H 0.07 2.03 7.93 -2.39 -0.02 2.01 16 9 C -0.12 -1.78 5.98 31.59 0.19 -1.59 16 10 C -0.12 -1.54 6.00 31.72 0.19 -1.35 16 11 C 0.12 2.37 4.01 45.57 0.18 2.55 16 12 H 0.10 2.05 7.43 -2.38 -0.02 2.03 16 13 C -0.12 -2.05 4.85 30.88 0.15 -1.90 16 14 N -0.62 -18.87 2.76 -756.27 -2.08 -20.96 16 15 C 0.53 22.73 7.93 87.66 0.69 23.43 16 16 O -0.60 -32.25 16.30 -3.01 -0.05 -32.30 16 17 C -0.11 -4.81 4.63 29.85 0.14 -4.67 16 18 C 0.05 2.65 4.26 29.85 0.13 2.78 16 19 C -0.54 -32.04 9.11 25.60 0.23 -31.80 16 20 H 0.08 4.07 7.74 -2.92 -0.02 4.05 16 21 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 22 N -0.94 -61.37 13.29 21.45 0.28 -61.08 16 23 Si 0.98 45.45 29.54 68.60 2.03 47.48 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.25 -10.90 7.11 99.48 0.71 -10.19 16 27 C 0.04 0.88 11.20 85.24 0.95 1.83 16 28 N -0.34 -8.60 12.58 -57.03 -0.72 -9.32 16 29 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.22 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.12 0.93 5.49 -2.38 -0.01 0.92 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.03 0.91 7.84 -2.39 -0.02 0.89 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.11 0.92 7.03 -2.39 -0.02 0.90 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.12 0.69 7.06 -2.38 -0.02 0.67 16 40 H 0.04 0.99 7.86 -2.38 -0.02 0.97 16 41 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.10 3.79 8.14 -2.39 -0.02 3.78 16 43 H 0.10 3.88 8.05 -2.38 -0.02 3.86 16 44 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 45 H -0.02 -1.44 8.10 -2.39 -0.02 -1.46 16 46 H 0.26 16.05 8.31 -92.71 -0.77 15.27 16 47 H 0.16 4.21 8.06 -2.92 -0.02 4.18 16 Total: -1.00 -89.87 374.17 4.87 -85.00 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.95 Total: 8.90 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.95 Total: -10.04 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -4.00 Total: -99.04 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.05 Total: -32.30 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -89.87 4.87 -85.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882689638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.755 kcal (2) G-P(sol) polarization free energy of solvation -89.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds