Wall clock time and date at job start Tue Mar 31 2020 11:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00069 * 2 1 4 4 C 1.52995 * 109.47279 * 185.04642 * 3 2 1 5 5 H 1.08994 * 109.70679 * 297.98978 * 4 3 2 6 6 C 1.53625 * 109.66497 * 58.57950 * 4 3 2 7 7 C 1.53035 * 109.24685 * 174.54993 * 6 4 3 8 8 C 1.53039 * 109.53883 * 298.51237 * 7 6 4 9 9 C 1.53189 * 109.31470 * 61.36144 * 8 7 6 10 10 N 1.46926 * 108.77393 * 305.36776 * 9 8 7 11 11 C 1.34786 * 120.63261 * 233.58393 * 10 9 8 12 12 O 1.21582 * 119.99947 * 186.48637 * 11 10 9 13 13 N 1.34768 * 119.99709 * 6.47980 * 11 10 9 14 14 C 1.39958 * 120.00238 * 185.37191 * 13 11 10 15 15 C 1.39284 * 119.94935 * 208.94511 * 14 13 11 16 16 C 1.38496 * 120.42619 * 179.97438 * 15 14 13 17 17 C 1.37677 * 120.32288 * 359.78573 * 16 15 14 18 18 C 1.40743 * 119.88006 * 0.49287 * 17 16 15 19 19 C 1.41419 * 120.20731 * 179.76455 * 18 17 16 20 20 H 1.07999 * 119.99665 * 36.65079 * 19 18 17 21 21 C 1.39931 * 119.99979 * 216.65082 * 19 18 17 22 22 N 1.30823 * 119.99877 * 178.44973 * 21 19 18 23 23 Si 1.86804 * 119.99883 * 358.45032 * 21 19 18 24 24 H 1.48498 * 109.47060 * 275.07876 * 23 21 19 25 25 H 1.48501 * 109.47177 * 35.07961 * 23 21 19 26 26 H 1.48495 * 109.47034 * 155.08002 * 23 21 19 27 27 C 1.38237 * 119.93968 * 28.96742 * 14 13 11 28 28 H 1.09002 * 109.47580 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47146 * 299.99864 * 1 2 3 30 30 H 1.09000 * 109.47682 * 59.99908 * 1 2 3 31 31 H 1.00899 * 110.99945 * 123.95879 * 2 1 3 32 32 H 1.09005 * 109.47154 * 65.04843 * 3 2 1 33 33 H 1.08996 * 109.47034 * 305.04998 * 3 2 1 34 34 H 1.09004 * 109.63832 * 54.55328 * 6 4 3 35 35 H 1.09003 * 109.45759 * 294.43863 * 6 4 3 36 36 H 1.09000 * 109.46552 * 178.49148 * 7 6 4 37 37 H 1.09002 * 109.45269 * 58.52300 * 7 6 4 38 38 H 1.09008 * 109.49518 * 301.41407 * 8 7 6 39 39 H 1.08998 * 109.53050 * 181.33036 * 8 7 6 40 40 H 1.09000 * 109.59217 * 185.58475 * 9 8 7 41 41 H 1.08996 * 109.70670 * 65.22520 * 9 8 7 42 42 H 0.97003 * 120.00581 * 5.37922 * 13 11 10 43 43 H 1.07997 * 119.78663 * 0.02562 * 15 14 13 44 44 H 1.07998 * 119.83404 * 179.97438 * 16 15 14 45 45 H 1.08002 * 120.06026 * 180.25080 * 17 16 15 46 46 H 0.97007 * 119.99891 * 179.97438 * 22 21 19 47 47 H 1.07991 * 120.16719 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5196 1.3326 -0.1269 5 1 3.9467 0.8136 0.7311 6 6 3.9122 0.6049 -1.4216 7 6 5.4288 0.6899 -1.6081 8 6 5.8475 2.1565 -1.7344 9 6 5.4758 2.9021 -0.4488 10 7 4.0442 2.7038 -0.1843 11 6 3.2287 3.7596 0.0078 12 8 2.0732 3.5824 0.3418 13 7 3.6942 5.0118 -0.1704 14 6 2.8831 6.1102 0.1368 15 6 3.0472 7.3099 -0.5516 16 6 2.2497 8.4029 -0.2560 17 6 1.2822 8.3140 0.7195 18 6 1.1089 7.1099 1.4274 19 6 0.1206 7.0124 2.4342 20 1 -0.8262 7.5174 2.3121 21 6 0.3694 6.2617 3.5885 22 7 -0.5330 6.1963 4.5334 23 14 1.9902 5.3529 3.7803 24 1 1.8987 4.0309 3.1101 25 1 3.0800 6.1481 3.1597 26 1 2.2802 5.1573 5.2235 27 6 1.9207 6.0028 1.1234 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8305 -0.5262 0.7813 32 1 1.7209 1.8660 0.9318 33 1 1.5747 1.9221 -0.8413 34 1 3.4144 1.0734 -2.2706 35 1 3.6118 -0.4409 -1.3557 36 1 5.7144 0.1517 -2.5118 37 1 5.9260 0.2433 -0.7470 38 1 5.3314 2.6106 -2.5804 39 1 6.9246 2.2158 -1.8908 40 1 5.6809 3.9656 -0.5708 41 1 6.0590 2.5107 0.3847 42 1 4.5913 5.1518 -0.5116 43 1 3.8006 7.3880 -1.3214 44 1 2.3855 9.3286 -0.7954 45 1 0.6600 9.1677 0.9437 46 1 -0.3606 5.6755 5.3335 47 1 1.7927 5.0731 1.6576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883569300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:49 Heat of formation + Delta-G solvation = 17.950997 kcal Electronic energy + Delta-G solvation = -27905.387853 eV Core-core repulsion = 24281.539298 eV Total energy + Delta-G solvation = -3623.848555 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79806 -38.45975 -36.98182 -35.96919 -34.42106 -33.27676 -32.73843 -31.41418 -30.33080 -28.47997 -27.04694 -25.15431 -24.73127 -23.85083 -22.27517 -21.74298 -21.08293 -20.24304 -19.34287 -18.11828 -17.25613 -16.37597 -16.05181 -15.54648 -15.26610 -14.92300 -14.64545 -14.60617 -14.38322 -14.20044 -13.94309 -13.64619 -13.28837 -13.07072 -12.98075 -12.87444 -12.42413 -12.13389 -12.09217 -11.80107 -11.65069 -11.51575 -11.14782 -11.08059 -10.85835 -10.82183 -10.73647 -10.64713 -10.50377 -9.89859 -9.81332 -9.59660 -9.12949 -8.88802 -8.53727 -8.09580 -7.54517 -7.06473 -6.76072 -4.42408 2.48473 2.68539 2.75137 3.24169 3.26672 3.35289 3.55179 3.96351 4.09654 4.45147 4.58830 4.61976 4.67410 4.70634 4.90632 5.12859 5.18640 5.30317 5.41237 5.44400 5.48493 5.55647 5.66995 5.71539 5.76014 5.86597 5.96802 5.97738 6.00183 6.08104 6.16305 6.26113 6.30314 6.49108 6.53234 6.68643 6.74085 6.79731 7.01134 7.11361 7.28214 7.43365 7.51403 7.55719 7.66536 7.90005 8.14648 8.25327 8.43720 8.69113 8.89244 8.92339 10.26123 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.005188 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.945405 B = 5395.818160 C = 6618.827459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.702 5.702 3 C 0.059 3.941 4 C 0.169 3.831 5 H 0.066 0.934 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.135 4.135 9 C 0.112 3.888 10 N -0.630 5.630 11 C 0.698 3.302 12 O -0.553 6.553 13 N -0.684 5.684 14 C 0.184 3.816 15 C -0.261 4.261 16 C -0.072 4.072 17 C -0.216 4.216 18 C 0.103 3.897 19 C -0.447 4.447 20 H 0.091 0.909 21 C 0.085 3.915 22 N -0.826 5.826 23 Si 0.910 3.090 24 H -0.263 1.263 25 H -0.247 1.247 26 H -0.301 1.301 27 C -0.229 4.229 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.332 0.668 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.395 0.605 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.282 0.718 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.066 -11.560 -9.477 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.334 5.334 3 C -0.069 4.069 4 C 0.065 3.935 5 H 0.083 0.917 6 C -0.157 4.157 7 C -0.158 4.158 8 C -0.174 4.174 9 C -0.012 4.012 10 N -0.369 5.369 11 C 0.401 3.599 12 O -0.428 6.428 13 N -0.332 5.332 14 C 0.091 3.909 15 C -0.283 4.283 16 C -0.091 4.091 17 C -0.235 4.235 18 C 0.099 3.901 19 C -0.477 4.477 20 H 0.109 0.891 21 C -0.131 4.131 22 N -0.452 5.452 23 Si 0.739 3.261 24 H -0.189 1.189 25 H -0.171 1.171 26 H -0.229 1.229 27 C -0.250 4.250 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.231 0.769 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.093 0.907 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.133 -11.839 -9.657 19.510 hybrid contribution 1.025 -0.060 0.856 1.336 sum 13.158 -11.899 -8.801 19.804 Atomic orbital electron populations 1.22082 0.87585 1.01032 1.00968 1.60473 1.08064 1.15664 1.49155 1.22667 0.92071 0.87595 1.04577 1.21101 0.94708 0.80170 0.97525 0.91652 1.21944 0.94874 1.01526 0.97372 1.21545 0.96591 0.95860 1.01812 1.21935 1.01219 0.96450 0.97762 1.21624 0.81447 1.00450 0.97642 1.47382 1.07998 1.05147 1.76395 1.16014 0.84756 0.80402 0.78740 1.91000 1.16386 1.83025 1.52358 1.42934 1.17869 1.03977 1.68410 1.17306 0.93091 0.85203 0.95272 1.20034 1.07743 0.94125 1.06378 1.20414 0.95537 0.96299 0.96855 1.21101 1.02408 0.97392 1.02644 1.17716 0.90855 0.89885 0.91650 1.19437 1.01562 1.26517 1.00180 0.89068 1.26012 0.98301 0.93684 0.95145 1.69603 1.34542 1.33930 1.07078 0.86453 0.83363 0.81251 0.75051 1.18872 1.17146 1.22914 1.21275 1.02717 0.99668 1.01332 0.91923 0.95708 0.91817 0.85170 0.91074 0.89971 0.91725 0.89780 0.91786 0.91967 0.91377 0.90862 0.90530 0.91284 0.76861 0.88694 0.88315 0.87988 0.90727 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.69 60.06 0.64 1.07 16 2 N -0.70 -9.04 6.13 -121.14 -0.74 -9.78 16 3 C 0.06 0.92 3.57 -3.83 -0.01 0.91 16 4 C 0.17 2.21 3.21 -67.38 -0.22 1.99 16 5 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.12 -1.25 5.13 -26.39 -0.14 -1.39 16 7 C -0.12 -1.00 5.88 -26.69 -0.16 -1.16 16 8 C -0.14 -1.11 6.08 -26.61 -0.16 -1.27 16 9 C 0.11 1.13 6.43 -3.71 -0.02 1.11 16 10 N -0.63 -8.94 2.97 -170.66 -0.51 -9.45 16 11 C 0.70 13.13 7.89 -86.92 -0.69 12.45 16 12 O -0.55 -12.60 9.31 5.29 0.05 -12.55 16 13 N -0.68 -12.45 5.25 -14.27 -0.07 -12.53 16 14 C 0.18 4.10 6.35 -83.76 -0.53 3.57 16 15 C -0.26 -5.34 9.95 -39.10 -0.39 -5.73 16 16 C -0.07 -1.51 10.02 -39.69 -0.40 -1.91 16 17 C -0.22 -5.14 9.79 -38.84 -0.38 -5.52 16 18 C 0.10 2.74 5.17 -106.84 -0.55 2.19 16 19 C -0.45 -12.85 9.63 -37.74 -0.36 -13.22 16 20 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 21 C 0.08 2.40 5.52 -17.35 -0.10 2.30 16 22 N -0.83 -23.52 13.93 55.55 0.77 -22.75 16 23 Si 0.91 22.91 24.38 -169.99 -4.14 18.76 16 24 H -0.26 -6.78 6.66 56.52 0.38 -6.40 16 25 H -0.25 -6.26 6.37 56.52 0.36 -5.90 16 26 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 27 C -0.23 -5.90 5.42 -38.69 -0.21 -6.11 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.33 3.74 8.87 -39.29 -0.35 3.39 16 32 H 0.07 1.40 6.26 -51.93 -0.32 1.07 16 33 H 0.08 1.50 7.21 -51.93 -0.37 1.13 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.85 7.77 -51.93 -0.40 0.44 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.71 5.59 -51.93 -0.29 0.42 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.39 5.58 6.31 -40.82 -0.26 5.32 16 43 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 46 H 0.28 7.38 8.30 -40.82 -0.34 7.04 16 47 H 0.13 3.44 2.08 -52.49 -0.11 3.33 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -31.94 358.88 -10.14 -42.08 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.23 Total: 11.52 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -3.67 Total: -10.72 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.55 Total: -54.51 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.05 Total: -12.55 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.14 Total: 18.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.94 -10.14 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883569300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.028 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds