Wall clock time and date at job start Tue Mar 31 2020 12:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99634 * 2 1 4 4 C 1.53008 * 109.46731 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47223 * 65.00011 * 4 3 2 6 6 C 1.46507 * 119.99755 * 269.99795 * 5 4 3 7 7 C 1.50696 * 109.47267 * 270.00441 * 6 5 4 8 8 H 1.08006 * 119.99693 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00378 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99794 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00363 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47134 * 59.99745 * 11 9 7 13 13 H 1.48503 * 109.47112 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47012 * 299.99665 * 11 9 7 15 15 C 1.38535 * 120.00147 * 90.00219 * 5 4 3 16 16 C 1.39672 * 120.52902 * 185.00162 * 15 5 4 17 17 C 1.38079 * 118.33026 * 180.02562 * 16 15 5 18 18 C 1.50701 * 120.39854 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.49738 * 343.76690 * 18 17 16 20 20 C 1.52997 * 117.49806 * 275.10833 * 18 17 16 21 21 N 1.32577 * 119.20053 * 359.97438 * 17 16 15 22 22 C 1.31764 * 121.01493 * 0.02562 * 21 17 16 23 23 C 1.50697 * 119.08433 * 179.97438 * 22 21 17 24 24 C 1.53002 * 117.49992 * 171.25142 * 23 22 21 25 25 C 1.53000 * 117.50034 * 239.90915 * 23 22 21 26 26 N 1.31777 * 121.83131 * 0.24935 * 22 21 17 27 27 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46908 * 300.00085 * 1 2 3 29 29 H 1.09001 * 109.47146 * 59.99627 * 1 2 3 30 30 H 1.09000 * 109.47624 * 60.00010 * 3 2 1 31 31 H 1.08998 * 109.46990 * 299.99674 * 3 2 1 32 32 H 1.09002 * 109.46839 * 304.99285 * 4 3 2 33 33 H 1.09001 * 109.46564 * 184.99904 * 4 3 2 34 34 H 1.09002 * 109.46698 * 30.00188 * 6 5 4 35 35 H 1.09001 * 109.46869 * 149.99886 * 6 5 4 36 36 H 0.96995 * 120.00380 * 179.97438 * 10 9 7 37 37 H 1.07997 * 120.83431 * 0.04125 * 16 15 5 38 38 H 1.09000 * 115.54736 * 129.43773 * 18 17 16 39 39 H 1.09000 * 117.50081 * 0.02562 * 19 18 17 40 40 H 1.09000 * 117.49477 * 145.01883 * 19 18 17 41 41 H 1.08995 * 117.49605 * 214.97932 * 20 18 17 42 42 H 1.09006 * 117.49973 * 359.97438 * 20 18 17 43 43 H 1.09002 * 115.54932 * 25.57979 * 23 22 21 44 44 H 1.09000 * 117.49996 * 215.00670 * 24 23 22 45 45 H 1.08999 * 117.49664 * 0.02562 * 24 23 22 46 46 H 1.09008 * 117.49673 * 359.97438 * 25 23 22 47 47 H 1.08999 * 117.49942 * 144.97208 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5009 -1.2978 -0.9447 8 1 6.2197 -0.5458 -0.6543 9 6 5.8606 -2.6288 -0.9524 10 7 4.9854 -3.5444 -1.3066 11 14 7.5909 -3.1316 -0.4598 12 1 7.8544 -2.6968 0.9354 13 1 7.7222 -4.6080 -0.5509 14 1 8.5714 -2.4898 -1.3719 15 6 4.2695 1.3552 -2.3516 16 6 4.5893 0.7724 -3.5799 17 6 4.8751 1.6034 -4.6450 18 6 5.2266 1.0244 -5.9912 19 6 5.6238 -0.4522 -6.0431 20 6 6.6859 0.6336 -6.2329 21 7 4.8365 2.9169 -4.4689 22 6 4.5311 3.4362 -3.2971 23 6 4.5007 4.9352 -3.1456 24 6 3.9462 5.5020 -1.8371 25 6 5.4491 5.5612 -2.1211 26 7 4.2568 2.6811 -2.2525 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8463 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9784 2.1766 0.0889 34 1 3.3852 -1.3629 -0.6733 35 1 3.9120 -1.2114 -2.3668 36 1 5.2385 -4.4808 -1.3124 37 1 4.6123 -0.3013 -3.6939 38 1 4.6662 1.4249 -6.8360 39 1 5.6306 -1.0050 -5.1037 40 1 5.3251 -1.0230 -6.9223 41 1 7.0855 0.7767 -7.2368 42 1 7.3919 0.7958 -5.4183 43 1 4.3059 5.4962 -4.0596 44 1 3.3865 6.4358 -1.8902 45 1 3.6038 4.7905 -1.0856 46 1 6.0948 4.8886 -1.5563 47 1 5.8786 6.5338 -2.3613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892892262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:25 Heat of formation + Delta-G solvation = 60.848284 kcal Electronic energy + Delta-G solvation = -27335.100775 eV Core-core repulsion = 23713.112385 eV Total energy + Delta-G solvation = -3621.988389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54402 -37.91942 -37.41452 -36.68749 -35.62529 -32.92761 -31.93816 -30.93285 -29.23310 -26.97737 -25.90332 -24.95651 -24.01028 -22.80475 -22.33978 -22.22692 -21.99528 -19.93168 -19.51592 -17.19544 -16.92812 -16.48957 -15.99481 -15.73698 -15.31037 -15.05142 -14.75850 -14.72594 -14.38308 -14.15434 -13.95238 -13.83494 -13.41971 -12.70058 -12.25397 -12.10144 -11.95598 -11.60816 -11.45805 -11.39874 -11.29585 -11.26012 -11.00820 -10.87917 -10.84214 -10.69497 -10.60349 -10.38670 -10.26285 -10.15212 -9.92470 -9.75344 -9.47517 -9.36993 -8.73850 -8.53708 -8.48673 -7.02690 -6.11128 -4.19988 1.64637 2.05812 3.26150 3.30833 3.33518 3.65592 3.84743 4.02813 4.13538 4.25817 4.36193 4.61945 4.68438 5.00970 5.07741 5.12518 5.18497 5.21018 5.22653 5.37129 5.42594 5.49864 5.55142 5.63321 5.67385 5.68215 5.73786 5.83886 5.85177 5.85650 5.90089 6.01074 6.04020 6.17495 6.22650 6.29705 6.34573 6.38585 6.46199 6.48627 6.93564 7.12319 7.30567 7.47506 7.54640 7.81524 8.11295 8.18988 8.27225 8.83797 8.98884 9.46225 10.93366 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.005794 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.301345 B = 4831.834505 C = 6611.054006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.049 3.951 4 C 0.129 3.871 5 N -0.563 5.563 6 C 0.253 3.747 7 C -0.536 4.536 8 H 0.057 0.943 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.450 3.550 16 C -0.275 4.275 17 C 0.218 3.782 18 C -0.105 4.105 19 C -0.171 4.171 20 C -0.161 4.161 21 N -0.571 5.571 22 C 0.380 3.620 23 C -0.089 4.089 24 C -0.156 4.156 25 C -0.159 4.159 26 N -0.592 5.592 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.150 0.850 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 11.955 -3.116 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.294 6.294 3 C -0.029 4.029 4 C 0.005 3.995 5 N -0.271 5.271 6 C 0.134 3.866 7 C -0.575 4.575 8 H 0.075 0.925 9 C -0.136 4.136 10 N -0.528 5.528 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.206 3.794 16 C -0.303 4.303 17 C 0.078 3.922 18 C -0.123 4.123 19 C -0.208 4.208 20 C -0.199 4.199 21 N -0.291 5.291 22 C 0.110 3.890 23 C -0.110 4.110 24 C -0.194 4.194 25 C -0.197 4.197 26 N -0.319 5.319 27 H 0.101 0.899 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.167 0.833 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.140 0.860 44 H 0.112 0.888 45 H 0.126 0.874 46 H 0.113 0.887 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.312 12.306 -2.862 13.350 hybrid contribution 0.723 -1.124 0.178 1.349 sum -3.589 11.182 -2.685 12.047 Atomic orbital electron populations 1.22673 0.82198 1.02390 0.99089 1.88063 1.18642 1.27486 1.95179 1.23062 0.95446 0.84886 0.99524 1.21363 0.90869 0.99604 0.87658 1.47076 1.64816 1.07586 1.07573 1.19485 0.97205 0.71307 0.98625 1.21478 0.97259 0.92337 1.46459 0.92473 1.24898 0.97432 0.96275 0.95040 1.69924 1.34323 1.01198 1.47383 0.86608 0.84557 0.77388 0.79216 1.20204 1.21093 1.20194 1.18550 0.86362 0.87165 0.87367 1.22104 1.12156 1.03065 0.92986 1.20185 0.90445 0.88366 0.93192 1.20669 0.99347 0.97782 0.94544 1.23151 1.02547 0.90759 1.04334 1.22914 0.91198 1.03047 1.02717 1.67688 1.22540 1.13307 1.25606 1.21450 0.89419 0.94385 0.83762 1.20501 1.07151 0.88128 0.95179 1.22958 0.95945 1.02079 0.98415 1.22930 0.93433 1.01663 1.01711 1.67523 1.26441 1.04382 1.33532 0.89877 0.94731 0.94745 0.93293 0.93623 0.89711 0.89089 0.92910 0.94826 0.92532 0.83278 0.86425 0.87307 0.88307 0.88532 0.88768 0.86031 0.88830 0.87361 0.88664 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.38 -6.76 9.53 -35.23 -0.34 -7.10 16 3 C 0.05 0.79 6.28 37.16 0.23 1.02 16 4 C 0.13 2.35 5.89 -4.04 -0.02 2.33 16 5 N -0.56 -12.04 2.52 -175.02 -0.44 -12.49 16 6 C 0.25 6.25 4.85 -5.19 -0.03 6.23 16 7 C -0.54 -14.38 9.39 -34.44 -0.32 -14.70 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 11 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.45 9.48 7.39 -154.79 -1.14 8.34 16 16 C -0.27 -5.71 8.59 -39.10 -0.34 -6.05 16 17 C 0.22 4.12 6.49 -82.33 -0.53 3.59 16 18 C -0.10 -1.63 6.24 -91.77 -0.57 -2.20 16 19 C -0.17 -2.50 9.83 -26.69 -0.26 -2.76 16 20 C -0.16 -2.28 10.24 -26.70 -0.27 -2.55 16 21 N -0.57 -10.84 10.27 -7.07 -0.07 -10.91 16 22 C 0.38 6.90 7.31 -157.24 -1.15 5.76 16 23 C -0.09 -1.26 6.23 -91.77 -0.57 -1.84 16 24 C -0.16 -1.86 10.01 -26.69 -0.27 -2.13 16 25 C -0.16 -1.94 10.24 -26.70 -0.27 -2.21 16 26 N -0.59 -11.36 8.14 -9.96 -0.08 -11.44 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.60 8.07 -51.93 -0.42 1.18 16 33 H 0.09 1.54 7.33 -51.93 -0.38 1.16 16 34 H 0.05 1.41 7.11 -51.93 -0.37 1.04 16 35 H 0.03 0.88 6.05 -51.93 -0.31 0.57 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 37 H 0.15 3.26 4.48 -52.49 -0.23 3.02 16 38 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.11 1.86 6.46 -51.93 -0.34 1.52 16 40 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.11 1.44 7.54 -51.93 -0.39 1.05 16 46 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16 47 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -29.85 389.05 -11.35 -41.19 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.49 Total: 7.00 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -4.51 Total: -3.92 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.14 Total: -59.10 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.34 Total: -7.10 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.85 -11.35 -41.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892892262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.042 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds