Wall clock time and date at job start Tue Mar 31 2020 12:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99634 * 2 1 4 4 C 1.53008 * 109.46731 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47223 * 65.00011 * 4 3 2 6 6 C 1.46507 * 119.99755 * 269.99795 * 5 4 3 7 7 C 1.50696 * 109.47267 * 270.00441 * 6 5 4 8 8 H 1.08006 * 119.99693 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00378 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99794 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00363 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47134 * 59.99745 * 11 9 7 13 13 H 1.48503 * 109.47112 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47012 * 299.99665 * 11 9 7 15 15 C 1.38535 * 120.00147 * 90.00219 * 5 4 3 16 16 C 1.39672 * 120.52902 * 185.00162 * 15 5 4 17 17 C 1.38079 * 118.33026 * 180.02562 * 16 15 5 18 18 C 1.50701 * 120.39854 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.49738 * 343.76690 * 18 17 16 20 20 C 1.52997 * 117.49806 * 275.10833 * 18 17 16 21 21 N 1.32577 * 119.20053 * 359.97438 * 17 16 15 22 22 C 1.31764 * 121.01493 * 0.02562 * 21 17 16 23 23 C 1.50697 * 119.08433 * 179.97438 * 22 21 17 24 24 C 1.53002 * 117.49992 * 171.25142 * 23 22 21 25 25 C 1.53000 * 117.50034 * 239.90915 * 23 22 21 26 26 N 1.31777 * 121.83131 * 0.24935 * 22 21 17 27 27 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46908 * 300.00085 * 1 2 3 29 29 H 1.09001 * 109.47146 * 59.99627 * 1 2 3 30 30 H 1.09000 * 109.47624 * 60.00010 * 3 2 1 31 31 H 1.08998 * 109.46990 * 299.99674 * 3 2 1 32 32 H 1.09002 * 109.46839 * 304.99285 * 4 3 2 33 33 H 1.09001 * 109.46564 * 184.99904 * 4 3 2 34 34 H 1.09002 * 109.46698 * 30.00188 * 6 5 4 35 35 H 1.09001 * 109.46869 * 149.99886 * 6 5 4 36 36 H 0.96995 * 120.00380 * 179.97438 * 10 9 7 37 37 H 1.07997 * 120.83431 * 0.04125 * 16 15 5 38 38 H 1.09000 * 115.54736 * 129.43773 * 18 17 16 39 39 H 1.09000 * 117.50081 * 0.02562 * 19 18 17 40 40 H 1.09000 * 117.49477 * 145.01883 * 19 18 17 41 41 H 1.08995 * 117.49605 * 214.97932 * 20 18 17 42 42 H 1.09006 * 117.49973 * 359.97438 * 20 18 17 43 43 H 1.09002 * 115.54932 * 25.57979 * 23 22 21 44 44 H 1.09000 * 117.49996 * 215.00670 * 24 23 22 45 45 H 1.08999 * 117.49664 * 0.02562 * 24 23 22 46 46 H 1.09008 * 117.49673 * 359.97438 * 25 23 22 47 47 H 1.08999 * 117.49942 * 144.97208 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5009 -1.2978 -0.9447 8 1 6.2197 -0.5458 -0.6543 9 6 5.8606 -2.6288 -0.9524 10 7 4.9854 -3.5444 -1.3066 11 14 7.5909 -3.1316 -0.4598 12 1 7.8544 -2.6968 0.9354 13 1 7.7222 -4.6080 -0.5509 14 1 8.5714 -2.4898 -1.3719 15 6 4.2695 1.3552 -2.3516 16 6 4.5893 0.7724 -3.5799 17 6 4.8751 1.6034 -4.6450 18 6 5.2266 1.0244 -5.9912 19 6 5.6238 -0.4522 -6.0431 20 6 6.6859 0.6336 -6.2329 21 7 4.8365 2.9169 -4.4689 22 6 4.5311 3.4362 -3.2971 23 6 4.5007 4.9352 -3.1456 24 6 3.9462 5.5020 -1.8371 25 6 5.4491 5.5612 -2.1211 26 7 4.2568 2.6811 -2.2525 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8463 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9784 2.1766 0.0889 34 1 3.3852 -1.3629 -0.6733 35 1 3.9120 -1.2114 -2.3668 36 1 5.2385 -4.4808 -1.3124 37 1 4.6123 -0.3013 -3.6939 38 1 4.6662 1.4249 -6.8360 39 1 5.6306 -1.0050 -5.1037 40 1 5.3251 -1.0230 -6.9223 41 1 7.0855 0.7767 -7.2368 42 1 7.3919 0.7958 -5.4183 43 1 4.3059 5.4962 -4.0596 44 1 3.3865 6.4358 -1.8902 45 1 3.6038 4.7905 -1.0856 46 1 6.0948 4.8886 -1.5563 47 1 5.8786 6.5338 -2.3613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892892262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:24 Heat of formation + Delta-G solvation = 46.311379 kcal Electronic energy + Delta-G solvation = -27335.731142 eV Core-core repulsion = 23713.112385 eV Total energy + Delta-G solvation = -3622.618757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.02618 -39.32064 -38.59078 -38.03535 -36.97671 -34.92624 -33.49906 -32.38938 -30.86326 -28.70197 -27.21281 -26.34811 -25.57262 -24.49462 -23.66349 -23.20564 -23.17059 -21.43637 -20.81894 -18.71785 -18.63011 -18.28444 -17.28797 -17.07657 -16.68666 -16.53075 -16.28795 -16.15775 -15.70790 -15.61150 -15.36519 -15.05501 -14.94347 -14.50593 -13.66768 -13.59928 -13.37797 -13.12939 -12.84960 -12.83922 -12.71875 -12.58149 -12.45847 -12.33143 -12.27929 -12.17046 -12.10137 -11.96396 -11.58034 -11.49615 -11.42516 -11.19493 -10.99300 -10.66273 -10.60221 -10.19941 -10.02775 -8.74385 -8.16851 -6.38164 0.15600 0.49898 1.36483 1.37244 1.45619 2.04670 2.37599 2.61688 2.81576 2.91347 3.01693 3.06447 3.25879 3.36531 3.76151 3.92985 3.95997 4.02262 4.11261 4.13605 4.19511 4.23869 4.31672 4.36520 4.42623 4.48284 4.51174 4.57716 4.68053 4.69369 4.77719 4.79634 4.83311 4.91580 4.96906 5.02966 5.07160 5.17153 5.22476 5.24359 5.27854 5.40127 5.52472 5.62793 5.91507 6.03575 6.25526 6.49906 6.60900 6.76869 7.30969 7.45245 8.82706 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.005794 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.301345 B = 4831.834505 C = 6611.054006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.059 3.941 4 C 0.128 3.872 5 N -0.572 5.572 6 C 0.278 3.722 7 C -0.548 4.548 8 H 0.045 0.955 9 C 0.023 3.977 10 N -0.918 5.918 11 Si 0.956 3.044 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.275 1.275 15 C 0.435 3.565 16 C -0.305 4.305 17 C 0.222 3.778 18 C -0.116 4.116 19 C -0.170 4.170 20 C -0.146 4.146 21 N -0.577 5.577 22 C 0.371 3.629 23 C -0.111 4.111 24 C -0.140 4.140 25 C -0.147 4.147 26 N -0.589 5.589 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.029 0.971 35 H 0.011 0.989 36 H 0.268 0.732 37 H 0.128 0.872 38 H 0.141 0.859 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.127 0.873 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 14.123 -3.619 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.333 6.333 3 C -0.019 4.019 4 C 0.004 3.996 5 N -0.280 5.280 6 C 0.157 3.843 7 C -0.586 4.586 8 H 0.064 0.936 9 C -0.178 4.178 10 N -0.557 5.557 11 Si 0.781 3.219 12 H -0.196 1.196 13 H -0.201 1.201 14 H -0.200 1.200 15 C 0.191 3.809 16 C -0.333 4.333 17 C 0.081 3.919 18 C -0.135 4.135 19 C -0.208 4.208 20 C -0.183 4.183 21 N -0.298 5.298 22 C 0.102 3.898 23 C -0.131 4.131 24 C -0.178 4.178 25 C -0.186 4.186 26 N -0.316 5.316 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.047 0.953 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.093 0.907 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.093 0.907 43 H 0.157 0.843 44 H 0.145 0.855 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.938 14.508 -3.350 15.401 hybrid contribution 0.570 -1.733 0.311 1.851 sum -3.368 12.775 -3.038 13.556 Atomic orbital electron populations 1.22854 0.80022 1.03252 1.00575 1.88012 1.21181 1.28622 1.95471 1.22965 0.93651 0.84550 1.00719 1.21508 0.92751 0.99444 0.85849 1.46900 1.65812 1.06405 1.08898 1.18897 0.95584 0.73477 0.96348 1.21637 0.97929 0.92461 1.46614 0.93643 1.25646 1.01128 0.96175 0.94822 1.70025 1.36120 1.01531 1.48015 0.85641 0.79909 0.77381 0.78947 1.19570 1.20084 1.20036 1.18737 0.86742 0.88104 0.87280 1.22067 1.14749 1.02350 0.94147 1.20695 0.88719 0.88385 0.94109 1.20837 1.00941 0.98258 0.93433 1.23128 1.03206 0.90516 1.03921 1.22997 0.89921 1.01513 1.03909 1.67858 1.22931 1.12973 1.25997 1.22417 0.87737 0.96359 0.83240 1.20716 1.09827 0.85488 0.97085 1.23038 0.96051 1.02655 0.96018 1.22999 0.93436 1.02239 0.99897 1.67617 1.26676 1.03285 1.33977 0.89471 0.92126 0.94228 0.89802 0.94345 0.90976 0.87937 0.95270 0.97140 0.92260 0.85403 0.84152 0.90680 0.85405 0.84942 0.90688 0.84323 0.85519 0.88966 0.90763 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.02 16 2 O -0.41 -15.20 9.53 -148.98 -1.42 -16.62 16 3 C 0.06 1.90 6.28 71.98 0.45 2.35 16 4 C 0.13 4.79 5.89 86.38 0.51 5.30 16 5 N -0.57 -25.79 2.52 -707.63 -1.78 -27.57 16 6 C 0.28 14.64 4.85 85.63 0.42 15.06 16 7 C -0.55 -30.73 9.39 25.60 0.24 -30.49 16 8 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 9 C 0.02 1.26 5.46 84.65 0.46 1.73 16 10 N -0.92 -53.20 13.29 21.45 0.28 -52.92 16 11 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 15 C 0.44 19.17 7.39 133.18 0.98 20.15 16 16 C -0.30 -13.41 8.59 22.58 0.19 -13.22 16 17 C 0.22 8.55 6.49 42.41 0.28 8.83 16 18 C -0.12 -3.55 6.24 -11.54 -0.07 -3.62 16 19 C -0.17 -5.00 9.83 30.62 0.30 -4.70 16 20 C -0.15 -3.96 10.24 30.62 0.31 -3.64 16 21 N -0.58 -21.78 10.27 -176.29 -1.81 -23.59 16 22 C 0.37 13.39 7.31 138.76 1.01 14.40 16 23 C -0.11 -2.92 6.23 -11.54 -0.07 -2.99 16 24 C -0.14 -2.96 10.01 30.62 0.31 -2.65 16 25 C -0.15 -3.23 10.24 30.62 0.31 -2.91 16 26 N -0.59 -22.96 8.14 -185.43 -1.51 -24.46 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 2.84 8.07 -2.39 -0.02 2.82 16 33 H 0.10 3.53 7.33 -2.39 -0.02 3.51 16 34 H 0.03 1.66 7.11 -2.39 -0.02 1.65 16 35 H 0.01 0.60 6.05 -2.39 -0.01 0.59 16 36 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.13 6.12 4.48 -2.91 -0.01 6.10 16 38 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 39 H 0.07 2.74 6.46 -2.39 -0.02 2.73 16 40 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.09 2.29 7.54 -2.39 -0.02 2.27 16 46 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -67.55 389.05 3.63 -63.92 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.96 Total: 29.67 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 6.88 Total: 5.61 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -4.82 Total: -128.55 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.42 Total: -16.62 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -67.55 3.63 -63.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892892262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.230 kcal (2) G-P(sol) polarization free energy of solvation -67.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds