Wall clock time and date at job start Tue Mar 31 2020 11:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1 5 5 O 1.21283 * 120.00405 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99669 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00026 * 359.97438 * 6 4 3 8 8 C 1.50705 * 109.46971 * 90.00341 * 7 6 4 9 9 H 1.07999 * 119.99928 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99892 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00162 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00078 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46559 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47103 * 119.99501 * 12 10 8 15 15 H 1.48499 * 109.46976 * 239.99966 * 12 10 8 16 16 C 1.46497 * 120.00000 * 180.02562 * 6 4 3 17 17 C 1.50696 * 109.47477 * 89.99415 * 16 6 4 18 18 C 1.38675 * 120.42183 * 269.72800 * 17 16 6 19 19 C 1.38630 * 118.41872 * 179.77948 * 18 17 16 20 20 C 1.38225 * 119.16453 * 0.51288 * 19 18 17 21 21 N 1.31861 * 120.75919 * 359.72295 * 20 19 18 22 22 C 1.31879 * 121.72809 * 0.02562 * 21 20 19 23 23 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 24 24 C 1.53777 * 113.61583 * 155.18264 * 23 2 1 25 25 C 1.53947 * 87.02152 * 220.05146 * 24 23 2 26 26 C 1.53779 * 87.11353 * 25.36605 * 25 24 23 27 27 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 28 28 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 30 30 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 31 31 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 32 32 H 1.09001 * 109.47178 * 210.00267 * 7 6 4 33 33 H 1.09001 * 109.47591 * 330.00074 * 7 6 4 34 34 H 0.97001 * 120.00209 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47423 * 210.00149 * 16 6 4 36 36 H 1.09010 * 109.46962 * 329.99854 * 16 6 4 37 37 H 1.07995 * 120.79049 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.41913 * 180.21427 * 19 18 17 39 39 H 1.07997 * 119.62333 * 179.74955 * 20 19 18 40 40 H 1.08005 * 119.61778 * 180.02562 * 22 21 20 41 41 H 1.08997 * 112.85070 * 286.38198 * 23 2 1 42 42 H 1.09006 * 113.61710 * 334.57320 * 24 23 2 43 43 H 1.08999 * 113.61231 * 105.47220 * 24 23 2 44 44 H 1.09001 * 113.53721 * 270.80773 * 25 24 23 45 45 H 1.09007 * 113.66738 * 139.93439 * 25 24 23 46 46 H 1.09001 * 113.61221 * 220.09547 * 26 25 24 47 47 H 1.09002 * 113.69434 * 89.19469 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 8 1.0046 1.4457 -2.1408 6 7 2.0187 3.3199 -1.5237 7 6 2.7818 4.0467 -0.5061 8 6 4.2558 3.8302 -0.7337 9 1 4.5905 3.2127 -1.5541 10 6 5.1769 4.4197 0.1060 11 7 4.7693 5.1713 1.1052 12 14 7.0039 4.1508 -0.1757 13 1 7.1984 3.2715 -1.3565 14 1 7.6652 5.4582 -0.4173 15 1 7.6002 3.5083 1.0230 16 6 1.6696 3.9770 -2.7857 17 6 0.3383 4.6680 -2.6409 18 6 -0.8374 3.9974 -2.9429 19 6 -2.0392 4.6713 -2.7904 20 6 -2.0252 5.9834 -2.3559 21 7 -0.8874 6.5913 -2.0826 22 6 0.2739 5.9798 -2.2114 23 6 1.9955 -0.7659 1.1376 24 6 3.4102 -1.3217 0.9041 25 6 2.9360 -2.6044 1.6110 26 6 1.5110 -2.2250 1.1749 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 1.5610 1.9274 0.8308 31 1 3.0796 1.3445 0.1082 32 1 2.5562 5.1110 -0.5739 33 1 2.5093 3.6799 0.4835 34 1 5.4173 5.5863 1.6957 35 1 2.4348 4.7115 -3.0367 36 1 1.6077 3.2314 -3.5785 37 1 -0.8175 2.9732 -3.2848 38 1 -2.9743 4.1790 -3.0130 39 1 -2.9569 6.5168 -2.2384 40 1 1.1852 6.5102 -1.9776 41 1 1.8828 -0.2439 2.0878 42 1 3.6539 -1.4676 -0.1483 43 1 4.1861 -0.7834 1.4485 44 1 3.0817 -2.5855 2.6910 45 1 3.3046 -3.5204 1.1491 46 1 0.7558 -2.4149 1.9376 47 1 1.2330 -2.6179 0.1968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900402303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:53 Heat of formation + Delta-G solvation = 29.341523 kcal Electronic energy + Delta-G solvation = -27234.396668 eV Core-core repulsion = 23611.042043 eV Total energy + Delta-G solvation = -3623.354625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09758 -39.44180 -38.46093 -35.41782 -34.44433 -33.05244 -32.13758 -31.35192 -28.33324 -27.49604 -26.33540 -25.33201 -25.00433 -23.42591 -22.84894 -22.42028 -21.43449 -19.17292 -18.37152 -16.96325 -16.77153 -16.45856 -16.09547 -15.69349 -15.45379 -15.16670 -14.92209 -14.62355 -14.37065 -13.94436 -13.76383 -13.38722 -13.04435 -12.87824 -12.74285 -12.44919 -12.34041 -12.14881 -11.88107 -11.71140 -11.60438 -11.38013 -11.18807 -11.15866 -10.97558 -10.82299 -10.63896 -10.41264 -10.24730 -10.08470 -9.82659 -9.58773 -9.23652 -9.09409 -8.73189 -8.61114 -7.97064 -7.79659 -6.23170 -4.31270 1.30263 1.52425 3.18903 3.28022 3.30944 3.38526 3.67228 4.11099 4.27843 4.46091 4.66881 4.70109 4.79959 4.98714 5.02602 5.05813 5.09695 5.17228 5.23131 5.29345 5.39032 5.55791 5.66599 5.69792 5.73456 5.78579 5.88420 5.91694 5.92313 5.96765 6.06651 6.14440 6.15130 6.19849 6.30131 6.35091 6.39007 6.52722 6.59072 6.68060 6.93770 7.08159 7.26374 7.41985 7.49033 7.71597 7.99249 8.18732 8.26320 8.75135 8.99391 9.37546 10.83373 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007918 B = 0.005630 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.494677 B = 4972.024633 C = 7903.309988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.513 5.513 3 C 0.043 3.957 4 C 0.523 3.477 5 O -0.557 6.557 6 N -0.593 5.593 7 C 0.238 3.762 8 C -0.539 4.539 9 H 0.063 0.937 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.895 3.105 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.162 3.838 17 C -0.144 4.144 18 C -0.056 4.056 19 C -0.182 4.182 20 C 0.088 3.912 21 N -0.490 5.490 22 C 0.114 3.886 23 C 0.053 3.947 24 C -0.127 4.127 25 C -0.142 4.142 26 C -0.128 4.128 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.013 0.987 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 -7.280 -1.764 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.237 5.237 3 C -0.087 4.087 4 C 0.312 3.688 5 O -0.437 6.437 6 N -0.324 5.324 7 C 0.118 3.882 8 C -0.578 4.578 9 H 0.082 0.918 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.038 3.962 17 C -0.147 4.147 18 C -0.083 4.083 19 C -0.202 4.202 20 C -0.069 4.069 21 N -0.198 5.198 22 C -0.043 4.043 23 C -0.056 4.056 24 C -0.165 4.165 25 C -0.180 4.180 26 C -0.166 4.166 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.175 0.825 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.844 -6.821 -2.177 11.379 hybrid contribution 0.823 -0.342 0.635 1.095 sum -8.020 -7.162 -1.541 10.863 Atomic orbital electron populations 1.22475 0.87477 1.01527 1.01147 1.61944 1.07947 1.12665 1.41112 1.21950 1.03159 0.88369 0.95214 1.20306 0.78641 0.81266 0.88627 1.90526 1.41509 1.64610 1.47050 1.48239 1.53656 1.12361 1.18120 1.19454 0.90369 0.92513 0.85882 1.21523 0.90646 1.31441 1.14148 0.91850 1.24939 0.99303 0.94671 0.94785 1.69932 1.34680 1.31709 1.16446 0.86480 0.84767 0.78156 0.78356 1.19564 1.20825 1.20836 1.20105 0.91473 0.96760 0.87882 1.21460 0.97299 0.95734 1.00204 1.21663 0.91651 1.00054 0.94925 1.22101 0.98881 0.96447 1.02732 1.22688 0.96404 0.92345 0.95434 1.67701 0.98577 1.38644 1.14872 1.22815 0.95963 0.91864 0.93688 1.23187 0.96796 0.93294 0.92279 1.22993 0.95851 0.95961 1.01708 1.22747 0.96816 0.98243 1.00201 1.22963 0.96577 0.95285 1.01727 0.89503 0.92000 0.96874 0.92561 0.86777 0.94571 0.94658 0.92520 0.89139 0.89796 0.84458 0.85314 0.83344 0.82529 0.91948 0.89107 0.91472 0.90508 0.91360 0.92069 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.03 60.07 0.54 0.87 16 2 N -0.51 -8.43 4.46 -235.35 -1.05 -9.48 16 3 C 0.04 0.80 3.97 -4.97 -0.02 0.78 16 4 C 0.52 10.42 7.40 -10.98 -0.08 10.34 16 5 O -0.56 -11.54 13.55 5.56 0.08 -11.46 16 6 N -0.59 -11.81 2.44 -176.43 -0.43 -12.25 16 7 C 0.24 5.38 4.97 -5.19 -0.03 5.35 16 8 C -0.54 -13.38 9.28 -34.44 -0.32 -13.70 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -23.85 13.29 55.43 0.74 -23.11 16 12 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 C 0.16 2.83 5.56 -5.20 -0.03 2.80 16 17 C -0.14 -2.35 5.48 -104.48 -0.57 -2.92 16 18 C -0.06 -0.85 9.86 -39.28 -0.39 -1.24 16 19 C -0.18 -2.38 10.11 -39.44 -0.40 -2.78 16 20 C 0.09 1.21 11.18 -17.54 -0.20 1.02 16 21 N -0.49 -8.01 10.36 -13.25 -0.14 -8.15 16 22 C 0.11 1.89 10.86 -17.55 -0.19 1.70 16 23 C 0.05 0.75 3.18 -66.90 -0.21 0.53 16 24 C -0.13 -1.70 7.59 -25.83 -0.20 -1.90 16 25 C -0.14 -1.55 8.09 -25.83 -0.21 -1.76 16 26 C -0.13 -1.49 6.57 -25.92 -0.17 -1.66 16 27 H 0.09 1.48 5.88 -51.93 -0.31 1.18 16 28 H 0.06 0.83 7.00 -51.93 -0.36 0.46 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 1.05 7.38 -51.93 -0.38 0.66 16 31 H 0.11 2.26 7.71 -51.93 -0.40 1.86 16 32 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 0.84 6.44 -51.93 -0.33 0.51 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.09 1.54 8.02 -51.93 -0.42 1.12 16 36 H 0.08 1.45 7.37 -51.92 -0.38 1.07 16 37 H 0.14 2.08 7.71 -52.49 -0.40 1.68 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.16 2.54 8.06 -52.48 -0.42 2.12 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.07 7.97 -51.93 -0.41 0.66 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -28.04 384.39 -10.19 -38.23 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.60 Total: 6.39 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.56 Total: -0.95 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.88 Total: -52.99 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.04 -10.19 -38.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900402303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.576 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds