Wall clock time and date at job start Tue Mar 31 2020 11:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1 5 5 O 1.21283 * 120.00405 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99669 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00026 * 359.97438 * 6 4 3 8 8 C 1.50705 * 109.46971 * 90.00341 * 7 6 4 9 9 H 1.07999 * 119.99928 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99892 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00162 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00078 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46559 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47103 * 119.99501 * 12 10 8 15 15 H 1.48499 * 109.46976 * 239.99966 * 12 10 8 16 16 C 1.46497 * 120.00000 * 180.02562 * 6 4 3 17 17 C 1.50696 * 109.47477 * 89.99415 * 16 6 4 18 18 C 1.38675 * 120.42183 * 269.72800 * 17 16 6 19 19 C 1.38630 * 118.41872 * 179.77948 * 18 17 16 20 20 C 1.38225 * 119.16453 * 0.51288 * 19 18 17 21 21 N 1.31861 * 120.75919 * 359.72295 * 20 19 18 22 22 C 1.31879 * 121.72809 * 0.02562 * 21 20 19 23 23 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 24 24 C 1.53777 * 113.61583 * 155.18264 * 23 2 1 25 25 C 1.53947 * 87.02152 * 220.05146 * 24 23 2 26 26 C 1.53779 * 87.11353 * 25.36605 * 25 24 23 27 27 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 28 28 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 30 30 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 31 31 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 32 32 H 1.09001 * 109.47178 * 210.00267 * 7 6 4 33 33 H 1.09001 * 109.47591 * 330.00074 * 7 6 4 34 34 H 0.97001 * 120.00209 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47423 * 210.00149 * 16 6 4 36 36 H 1.09010 * 109.46962 * 329.99854 * 16 6 4 37 37 H 1.07995 * 120.79049 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.41913 * 180.21427 * 19 18 17 39 39 H 1.07997 * 119.62333 * 179.74955 * 20 19 18 40 40 H 1.08005 * 119.61778 * 180.02562 * 22 21 20 41 41 H 1.08997 * 112.85070 * 286.38198 * 23 2 1 42 42 H 1.09006 * 113.61710 * 334.57320 * 24 23 2 43 43 H 1.08999 * 113.61231 * 105.47220 * 24 23 2 44 44 H 1.09001 * 113.53721 * 270.80773 * 25 24 23 45 45 H 1.09007 * 113.66738 * 139.93439 * 25 24 23 46 46 H 1.09001 * 113.61221 * 220.09547 * 26 25 24 47 47 H 1.09002 * 113.69434 * 89.19469 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 8 1.0046 1.4457 -2.1408 6 7 2.0187 3.3199 -1.5237 7 6 2.7818 4.0467 -0.5061 8 6 4.2558 3.8302 -0.7337 9 1 4.5905 3.2127 -1.5541 10 6 5.1769 4.4197 0.1060 11 7 4.7693 5.1713 1.1052 12 14 7.0039 4.1508 -0.1757 13 1 7.1984 3.2715 -1.3565 14 1 7.6652 5.4582 -0.4173 15 1 7.6002 3.5083 1.0230 16 6 1.6696 3.9770 -2.7857 17 6 0.3383 4.6680 -2.6409 18 6 -0.8374 3.9974 -2.9429 19 6 -2.0392 4.6713 -2.7904 20 6 -2.0252 5.9834 -2.3559 21 7 -0.8874 6.5913 -2.0826 22 6 0.2739 5.9798 -2.2114 23 6 1.9955 -0.7659 1.1376 24 6 3.4102 -1.3217 0.9041 25 6 2.9360 -2.6044 1.6110 26 6 1.5110 -2.2250 1.1749 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 1.5610 1.9274 0.8308 31 1 3.0796 1.3445 0.1082 32 1 2.5562 5.1110 -0.5739 33 1 2.5093 3.6799 0.4835 34 1 5.4173 5.5863 1.6957 35 1 2.4348 4.7115 -3.0367 36 1 1.6077 3.2314 -3.5785 37 1 -0.8175 2.9732 -3.2848 38 1 -2.9743 4.1790 -3.0130 39 1 -2.9569 6.5168 -2.2384 40 1 1.1852 6.5102 -1.9776 41 1 1.8828 -0.2439 2.0878 42 1 3.6539 -1.4676 -0.1483 43 1 4.1861 -0.7834 1.4485 44 1 3.0817 -2.5855 2.6910 45 1 3.3046 -3.5204 1.1491 46 1 0.7558 -2.4149 1.9376 47 1 1.2330 -2.6179 0.1968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900402303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:53 Heat of formation + Delta-G solvation = 14.377863 kcal Electronic energy + Delta-G solvation = -27235.045541 eV Core-core repulsion = 23611.042043 eV Total energy + Delta-G solvation = -3624.003498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43134 -40.71513 -39.73220 -36.97130 -35.80573 -34.78408 -33.58304 -32.60635 -29.71040 -29.30415 -27.59846 -26.57998 -26.10477 -24.98965 -24.33435 -23.61186 -22.68568 -20.24761 -19.95001 -18.68509 -18.20957 -17.86468 -17.41077 -17.06850 -16.81614 -16.52290 -16.38476 -15.97321 -15.83093 -15.26266 -15.06472 -14.62476 -14.43223 -14.26016 -14.09049 -13.92093 -13.66742 -13.47795 -13.28333 -13.25040 -12.84511 -12.79522 -12.71913 -12.57792 -12.50057 -12.38536 -12.08019 -11.77926 -11.70130 -11.41890 -11.10917 -10.84239 -10.67099 -10.50920 -10.45361 -9.96372 -9.48372 -9.27597 -8.20933 -6.35578 0.12071 0.33164 1.40042 1.44000 1.53988 1.75808 2.20323 2.41877 2.90022 3.09741 3.11060 3.53653 3.62349 3.73933 3.82926 3.88551 3.96636 4.00262 4.04934 4.09872 4.11158 4.24621 4.38204 4.49198 4.60031 4.63876 4.69284 4.70777 4.74763 4.84732 4.86932 4.88521 4.95204 5.05525 5.09424 5.10938 5.16963 5.20447 5.34789 5.37363 5.50435 5.63504 5.77578 5.79376 5.96996 6.04183 6.22192 6.54794 6.80592 7.00839 7.31353 7.41663 8.84752 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007918 B = 0.005630 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.494677 B = 4972.024633 C = 7903.309988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.521 5.521 3 C 0.053 3.947 4 C 0.520 3.480 5 O -0.564 6.564 6 N -0.595 5.595 7 C 0.256 3.744 8 C -0.543 4.543 9 H 0.055 0.945 10 C 0.024 3.976 11 N -0.919 5.919 12 Si 0.954 3.046 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.278 1.278 16 C 0.163 3.837 17 C -0.154 4.154 18 C -0.064 4.064 19 C -0.169 4.169 20 C 0.089 3.911 21 N -0.511 5.511 22 C 0.099 3.901 23 C 0.041 3.959 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.117 4.117 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.017 0.983 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.166 0.834 39 H 0.186 0.814 40 H 0.148 0.852 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.912 -8.590 -1.720 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.245 5.245 3 C -0.078 4.078 4 C 0.308 3.692 5 O -0.444 6.444 6 N -0.325 5.325 7 C 0.135 3.865 8 C -0.581 4.581 9 H 0.073 0.927 10 C -0.176 4.176 11 N -0.558 5.558 12 Si 0.779 3.221 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.204 1.204 16 C 0.040 3.960 17 C -0.157 4.157 18 C -0.090 4.090 19 C -0.188 4.188 20 C -0.069 4.069 21 N -0.220 5.220 22 C -0.057 4.057 23 C -0.067 4.067 24 C -0.173 4.173 25 C -0.165 4.165 26 C -0.154 4.154 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.154 0.846 38 H 0.184 0.816 39 H 0.203 0.797 40 H 0.165 0.835 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.016 -8.139 -2.147 13.083 hybrid contribution 1.090 0.072 0.587 1.240 sum -8.926 -8.067 -1.560 12.132 Atomic orbital electron populations 1.22420 0.86671 1.02689 1.00303 1.61988 1.08759 1.11200 1.42589 1.21763 1.02026 0.89738 0.94252 1.20550 0.78423 0.81137 0.89040 1.90512 1.41845 1.64640 1.47442 1.48201 1.53433 1.12498 1.18405 1.19042 0.89751 0.91733 0.85949 1.21677 0.91807 1.30960 1.13695 0.92689 1.25610 1.03017 0.94442 0.94549 1.70020 1.35944 1.32622 1.17260 0.85566 0.80255 0.78031 0.78216 1.19436 1.20467 1.20403 1.20140 0.92483 0.96647 0.86719 1.21277 0.97072 0.95777 1.01611 1.21760 0.92082 1.00094 0.95086 1.22466 0.99469 0.96093 1.00777 1.23340 0.96750 0.92846 0.93918 1.67710 0.99175 1.39406 1.15700 1.22716 0.96231 0.92077 0.94695 1.23396 0.97610 0.94396 0.91319 1.23013 0.95387 0.97735 1.01176 1.22714 0.95704 0.97259 1.00812 1.22914 0.97566 0.92747 1.02213 0.91487 0.89776 0.96470 0.93178 0.88574 0.95975 0.96109 0.92364 0.89339 0.89709 0.84625 0.81604 0.79736 0.83455 0.92142 0.90502 0.92285 0.89128 0.89964 0.90260 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.03 127.69 1.15 1.95 16 2 N -0.52 -17.09 4.46 -898.51 -4.00 -21.09 16 3 C 0.05 2.02 3.97 85.56 0.34 2.35 16 4 C 0.52 21.19 7.40 87.66 0.65 21.84 16 5 O -0.56 -23.57 13.55 -3.04 -0.04 -23.61 16 6 N -0.59 -24.50 2.44 -830.49 -2.03 -26.52 16 7 C 0.26 12.06 4.97 85.64 0.43 12.49 16 8 C -0.54 -27.64 9.28 25.60 0.24 -27.40 16 9 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 10 C 0.02 1.26 5.46 84.65 0.46 1.72 16 11 N -0.92 -50.13 13.29 21.45 0.28 -49.84 16 12 Si 0.95 41.36 29.54 68.60 2.03 43.38 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 16 C 0.16 5.90 5.56 85.63 0.48 6.38 16 17 C -0.15 -5.11 5.48 -19.77 -0.11 -5.22 16 18 C -0.06 -1.86 9.86 22.47 0.22 -1.64 16 19 C -0.17 -3.99 10.11 22.36 0.23 -3.76 16 20 C 0.09 2.22 11.18 84.69 0.95 3.17 16 21 N -0.51 -16.41 10.36 -195.84 -2.03 -18.44 16 22 C 0.10 3.37 10.86 84.67 0.92 4.29 16 23 C 0.04 1.12 3.18 45.44 0.14 1.26 16 24 C -0.14 -3.56 7.59 31.18 0.24 -3.32 16 25 C -0.13 -2.48 8.09 31.18 0.25 -2.23 16 26 C -0.12 -2.45 6.57 31.12 0.20 -2.24 16 27 H 0.07 2.26 5.88 -2.38 -0.01 2.25 16 28 H 0.08 2.09 7.00 -2.39 -0.02 2.07 16 29 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 1.94 7.38 -2.39 -0.02 1.92 16 31 H 0.10 3.98 7.71 -2.39 -0.02 3.97 16 32 H 0.02 1.10 8.07 -2.39 -0.02 1.09 16 33 H 0.02 1.04 6.44 -2.39 -0.02 1.03 16 34 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.09 3.16 8.02 -2.39 -0.02 3.14 16 36 H 0.08 3.01 7.37 -2.38 -0.02 2.99 16 37 H 0.14 4.01 7.71 -2.91 -0.02 3.99 16 38 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.19 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.15 5.09 8.06 -2.91 -0.02 5.07 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.09 1.88 7.97 -2.39 -0.02 1.86 16 Total: -1.00 -60.31 384.39 1.94 -58.38 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.94 Total: 28.11 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.79 Total: 9.64 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -7.77 Total: -115.90 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.04 Total: -23.61 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -60.31 1.94 -58.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900402303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.753 kcal (2) G-P(sol) polarization free energy of solvation -60.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds