Wall clock time and date at job start Tue Mar 31 2020 11:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99928 * 2 1 4 4 C 1.50695 * 109.46780 * 293.95481 * 3 2 1 5 5 O 1.21277 * 120.00255 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99713 * 179.97438 * 4 3 2 7 7 C 1.46505 * 120.00348 * 359.97438 * 6 4 3 8 8 C 1.50701 * 109.46907 * 270.00368 * 7 6 4 9 9 H 1.07998 * 120.00359 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99943 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99746 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99865 * 179.97438 * 10 8 7 13 13 H 1.48490 * 109.47228 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46695 * 120.00183 * 12 10 8 15 15 H 1.48502 * 109.46959 * 239.99536 * 12 10 8 16 16 C 1.46504 * 120.00412 * 179.97438 * 6 4 3 17 17 C 1.50707 * 109.46935 * 270.00507 * 16 6 4 18 18 C 1.38227 * 119.62059 * 95.01845 * 17 16 6 19 19 C 1.38627 * 119.15702 * 179.74122 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61137 * 274.99275 * 17 16 6 23 23 C 1.46904 * 111.00081 * 123.95094 * 2 1 3 24 24 C 1.53778 * 113.61350 * 155.18377 * 23 2 1 25 25 C 1.53958 * 87.01953 * 220.04821 * 24 23 2 26 26 C 1.53785 * 113.60909 * 57.57720 * 23 2 1 27 27 H 1.09004 * 109.47026 * 60.00145 * 1 2 3 28 28 H 1.09004 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47301 * 300.00079 * 1 2 3 30 30 H 1.08999 * 109.46898 * 173.95091 * 3 2 1 31 31 H 1.08998 * 109.46859 * 53.95099 * 3 2 1 32 32 H 1.08999 * 109.46642 * 29.99521 * 7 6 4 33 33 H 1.08999 * 109.47585 * 149.99676 * 7 6 4 34 34 H 0.97001 * 119.99623 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47679 * 149.99974 * 16 6 4 36 36 H 1.09003 * 109.46652 * 29.99934 * 16 6 4 37 37 H 1.07998 * 120.41916 * 359.95342 * 18 17 16 38 38 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 39 39 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 40 40 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 41 41 H 1.08997 * 112.85029 * 286.38280 * 23 2 1 42 42 H 1.09004 * 113.61663 * 334.56924 * 24 23 2 43 43 H 1.08997 * 113.61410 * 105.47132 * 24 23 2 44 44 H 1.08997 * 113.54040 * 270.81490 * 25 24 23 45 45 H 1.09003 * 113.66402 * 139.93258 * 25 24 23 46 46 H 1.08996 * 113.61240 * 254.52457 * 26 23 2 47 47 H 1.08992 * 113.61769 * 25.35076 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0054 1.4453 -2.1410 6 7 2.0179 3.3202 -1.5233 7 6 2.7802 4.0474 -0.5052 8 6 1.8288 4.7614 0.4200 9 1 0.7629 4.6819 0.2649 10 6 2.3190 5.5163 1.4644 11 7 3.6169 5.6128 1.6535 12 14 1.1396 6.4019 2.6108 13 1 -0.2579 6.1343 2.1864 14 1 1.3374 5.9124 3.9988 15 1 1.4022 7.8626 2.5590 16 6 1.6699 3.9769 -2.7858 17 6 2.7633 3.7372 -3.7948 18 6 2.6505 2.6887 -4.6884 19 6 3.6594 2.4803 -5.6160 20 6 4.7537 3.3319 -5.6036 21 6 4.7969 4.3592 -4.6804 22 7 3.8163 4.5305 -3.8152 23 6 1.9955 -0.7659 1.1376 24 6 3.4102 -1.3217 0.9042 25 6 2.9359 -2.6045 1.6112 26 6 1.5109 -2.2250 1.1749 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.0797 1.3444 0.1083 31 1 1.5610 1.9274 0.8309 32 1 3.3846 3.3440 0.0675 33 1 3.4311 4.7753 -0.9896 34 1 3.9618 6.1435 2.3886 35 1 1.5576 5.0482 -2.6192 36 1 0.7323 3.5675 -3.1619 37 1 1.7857 2.0422 -4.6664 38 1 3.5965 1.6713 -6.3288 39 1 5.5598 3.1969 -6.3095 40 1 5.6438 5.0293 -4.6668 41 1 1.8827 -0.2440 2.0878 42 1 3.6538 -1.4677 -0.1482 43 1 4.1860 -0.7834 1.4486 44 1 3.0815 -2.5856 2.6912 45 1 3.3045 -3.5204 1.1493 46 1 0.7557 -2.4148 1.9376 47 1 1.2329 -2.6179 0.1970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900567785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:50 Heat of formation + Delta-G solvation = 32.220839 kcal Electronic energy + Delta-G solvation = -27207.200806 eV Core-core repulsion = 23583.971037 eV Total energy + Delta-G solvation = -3623.229769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05587 -39.40687 -38.41121 -35.25510 -34.39256 -32.79787 -32.14824 -31.43934 -28.37651 -27.44334 -26.32554 -25.36683 -25.01959 -23.30045 -22.82600 -22.37369 -21.42745 -19.16327 -18.33046 -16.88845 -16.65696 -16.32898 -15.93797 -15.63188 -15.43870 -15.22748 -14.92310 -14.56576 -14.33275 -14.11042 -13.60129 -13.35500 -13.01459 -12.82605 -12.71588 -12.40791 -12.33651 -12.12161 -11.69890 -11.57691 -11.49617 -11.34181 -11.22912 -11.15114 -10.92233 -10.72832 -10.64080 -10.40376 -10.18307 -10.08812 -9.76654 -9.61678 -9.16474 -9.03747 -8.70585 -8.51370 -7.94083 -7.70921 -6.15643 -4.22878 1.33588 1.54865 3.21926 3.30565 3.33583 3.42525 3.68895 4.16485 4.32688 4.51947 4.63842 4.71018 4.80208 4.97081 5.00628 5.06077 5.07560 5.17663 5.28716 5.39787 5.42939 5.62355 5.73479 5.79922 5.80229 5.83906 5.91069 5.93236 5.95074 6.00811 6.05441 6.08515 6.16202 6.25379 6.34371 6.39054 6.41713 6.44075 6.54706 6.81130 6.95732 7.18473 7.36104 7.46232 7.58343 7.79640 8.08751 8.30104 8.39327 8.81944 9.05059 9.44455 10.91144 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007042 B = 0.005922 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3975.324897 B = 4726.913949 C = 7582.478141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.514 5.514 3 C 0.043 3.957 4 C 0.522 3.478 5 O -0.558 6.558 6 N -0.589 5.589 7 C 0.238 3.762 8 C -0.537 4.537 9 H 0.060 0.940 10 C 0.066 3.934 11 N -0.889 5.889 12 Si 0.894 3.106 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.169 3.831 17 C 0.121 3.879 18 C -0.150 4.150 19 C -0.084 4.084 20 C -0.182 4.182 21 C 0.094 3.906 22 N -0.465 5.465 23 C 0.052 3.948 24 C -0.128 4.128 25 C -0.142 4.142 26 C -0.128 4.128 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.017 0.983 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.152 0.848 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 -10.379 -6.821 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.238 5.238 3 C -0.087 4.087 4 C 0.310 3.690 5 O -0.438 6.438 6 N -0.320 5.320 7 C 0.118 3.882 8 C -0.576 4.576 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.527 5.527 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.045 3.955 17 C -0.018 4.018 18 C -0.171 4.171 19 C -0.110 4.110 20 C -0.202 4.202 21 C -0.064 4.064 22 N -0.174 5.174 23 C -0.056 4.056 24 C -0.166 4.166 25 C -0.180 4.180 26 C -0.165 4.165 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.200 -10.119 -6.939 12.271 hybrid contribution -0.611 0.423 0.940 1.198 sum -0.411 -9.696 -5.999 11.409 Atomic orbital electron populations 1.22473 0.87211 1.01404 1.01553 1.61978 1.08268 1.12662 1.40926 1.21912 1.01741 0.88702 0.96381 1.20334 0.78940 0.81376 0.88340 1.90524 1.41505 1.64635 1.47157 1.48186 1.54942 1.12297 1.16536 1.19487 0.91254 0.92209 0.85254 1.21519 0.93503 1.30424 1.12117 0.92129 1.24929 0.95130 0.96213 0.97470 1.69944 1.11549 1.40243 1.30945 0.86501 0.81209 0.79601 0.80526 1.19707 1.20944 1.20785 1.20109 0.93328 0.99594 0.82491 1.21895 0.94294 0.91026 0.94611 1.22126 1.00511 0.98547 0.95875 1.21541 0.93442 0.98276 0.97716 1.22080 0.99377 0.97485 1.01273 1.22754 0.96694 0.95981 0.90924 1.67598 1.00816 1.27714 1.21281 1.23193 0.96521 0.93380 0.92553 1.22994 0.95968 0.96164 1.01478 1.22744 0.96918 0.98084 1.00214 1.22956 0.96534 0.95305 1.01747 0.89384 0.92122 0.96467 0.88548 0.90637 0.94881 0.93477 0.92631 0.88645 0.89387 0.84403 0.85335 0.85358 0.83111 0.91761 0.89298 0.91675 0.90465 0.91398 0.91983 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.03 60.06 0.54 0.89 16 2 N -0.51 -8.63 4.46 -235.34 -1.05 -9.67 16 3 C 0.04 0.82 3.97 -4.97 -0.02 0.80 16 4 C 0.52 10.76 7.40 -10.99 -0.08 10.68 16 5 O -0.56 -11.83 13.85 5.56 0.08 -11.76 16 6 N -0.59 -12.47 2.44 -176.43 -0.43 -12.90 16 7 C 0.24 5.74 4.97 -5.19 -0.03 5.71 16 8 C -0.54 -13.95 9.28 -34.44 -0.32 -14.27 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 12 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.17 3.23 5.72 -5.19 -0.03 3.20 16 17 C 0.12 2.17 6.36 -82.58 -0.53 1.65 16 18 C -0.15 -2.38 9.72 -39.44 -0.38 -2.76 16 19 C -0.08 -1.11 10.18 -39.28 -0.40 -1.51 16 20 C -0.18 -2.30 10.11 -39.44 -0.40 -2.70 16 21 C 0.09 1.39 11.18 -17.55 -0.20 1.20 16 22 N -0.46 -8.55 10.27 -9.47 -0.10 -8.64 16 23 C 0.05 0.74 3.18 -66.90 -0.21 0.53 16 24 C -0.13 -1.66 7.59 -25.83 -0.20 -1.86 16 25 C -0.14 -1.52 8.09 -25.82 -0.21 -1.73 16 26 C -0.13 -1.50 6.57 -25.91 -0.17 -1.67 16 27 H 0.09 1.59 5.88 -51.93 -0.31 1.28 16 28 H 0.06 0.84 7.00 -51.93 -0.36 0.48 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 1.84 7.11 -51.93 -0.37 1.47 16 31 H 0.08 1.54 7.98 -51.93 -0.41 1.13 16 32 H 0.03 0.83 6.44 -51.93 -0.33 0.50 16 33 H 0.05 1.24 8.07 -51.93 -0.42 0.82 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.10 1.86 8.07 -51.93 -0.42 1.44 16 36 H 0.09 1.58 7.32 -51.93 -0.38 1.20 16 37 H 0.14 2.17 8.01 -52.49 -0.42 1.74 16 38 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 1.07 7.97 -51.93 -0.41 0.66 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -29.44 385.12 -10.32 -39.75 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.61 Total: 6.00 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.72 Total: -0.21 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.84 Total: -55.18 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.44 -10.32 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900567785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.972 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds