Wall clock time and date at job start Tue Mar 31 2020 11:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99928 * 2 1 4 4 C 1.50695 * 109.46780 * 293.95481 * 3 2 1 5 5 O 1.21277 * 120.00255 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99713 * 179.97438 * 4 3 2 7 7 C 1.46505 * 120.00348 * 359.97438 * 6 4 3 8 8 C 1.50701 * 109.46907 * 270.00368 * 7 6 4 9 9 H 1.07998 * 120.00359 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99943 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99746 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99865 * 179.97438 * 10 8 7 13 13 H 1.48490 * 109.47228 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46695 * 120.00183 * 12 10 8 15 15 H 1.48502 * 109.46959 * 239.99536 * 12 10 8 16 16 C 1.46504 * 120.00412 * 179.97438 * 6 4 3 17 17 C 1.50707 * 109.46935 * 270.00507 * 16 6 4 18 18 C 1.38227 * 119.62059 * 95.01845 * 17 16 6 19 19 C 1.38627 * 119.15702 * 179.74122 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61137 * 274.99275 * 17 16 6 23 23 C 1.46904 * 111.00081 * 123.95094 * 2 1 3 24 24 C 1.53778 * 113.61350 * 155.18377 * 23 2 1 25 25 C 1.53958 * 87.01953 * 220.04821 * 24 23 2 26 26 C 1.53785 * 113.60909 * 57.57720 * 23 2 1 27 27 H 1.09004 * 109.47026 * 60.00145 * 1 2 3 28 28 H 1.09004 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47301 * 300.00079 * 1 2 3 30 30 H 1.08999 * 109.46898 * 173.95091 * 3 2 1 31 31 H 1.08998 * 109.46859 * 53.95099 * 3 2 1 32 32 H 1.08999 * 109.46642 * 29.99521 * 7 6 4 33 33 H 1.08999 * 109.47585 * 149.99676 * 7 6 4 34 34 H 0.97001 * 119.99623 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47679 * 149.99974 * 16 6 4 36 36 H 1.09003 * 109.46652 * 29.99934 * 16 6 4 37 37 H 1.07998 * 120.41916 * 359.95342 * 18 17 16 38 38 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 39 39 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 40 40 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 41 41 H 1.08997 * 112.85029 * 286.38280 * 23 2 1 42 42 H 1.09004 * 113.61663 * 334.56924 * 24 23 2 43 43 H 1.08997 * 113.61410 * 105.47132 * 24 23 2 44 44 H 1.08997 * 113.54040 * 270.81490 * 25 24 23 45 45 H 1.09003 * 113.66402 * 139.93258 * 25 24 23 46 46 H 1.08996 * 113.61240 * 254.52457 * 26 23 2 47 47 H 1.08992 * 113.61769 * 25.35076 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0054 1.4453 -2.1410 6 7 2.0179 3.3202 -1.5233 7 6 2.7802 4.0474 -0.5052 8 6 1.8288 4.7614 0.4200 9 1 0.7629 4.6819 0.2649 10 6 2.3190 5.5163 1.4644 11 7 3.6169 5.6128 1.6535 12 14 1.1396 6.4019 2.6108 13 1 -0.2579 6.1343 2.1864 14 1 1.3374 5.9124 3.9988 15 1 1.4022 7.8626 2.5590 16 6 1.6699 3.9769 -2.7858 17 6 2.7633 3.7372 -3.7948 18 6 2.6505 2.6887 -4.6884 19 6 3.6594 2.4803 -5.6160 20 6 4.7537 3.3319 -5.6036 21 6 4.7969 4.3592 -4.6804 22 7 3.8163 4.5305 -3.8152 23 6 1.9955 -0.7659 1.1376 24 6 3.4102 -1.3217 0.9042 25 6 2.9359 -2.6045 1.6112 26 6 1.5109 -2.2250 1.1749 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.0797 1.3444 0.1083 31 1 1.5610 1.9274 0.8309 32 1 3.3846 3.3440 0.0675 33 1 3.4311 4.7753 -0.9896 34 1 3.9618 6.1435 2.3886 35 1 1.5576 5.0482 -2.6192 36 1 0.7323 3.5675 -3.1619 37 1 1.7857 2.0422 -4.6664 38 1 3.5965 1.6713 -6.3288 39 1 5.5598 3.1969 -6.3095 40 1 5.6438 5.0293 -4.6668 41 1 1.8827 -0.2440 2.0878 42 1 3.6538 -1.4677 -0.1482 43 1 4.1860 -0.7834 1.4486 44 1 3.0815 -2.5856 2.6912 45 1 3.3045 -3.5204 1.1493 46 1 0.7557 -2.4148 1.9376 47 1 1.2329 -2.6179 0.1970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900567785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:49 Heat of formation + Delta-G solvation = 15.458998 kcal Electronic energy + Delta-G solvation = -27207.927654 eV Core-core repulsion = 23583.971037 eV Total energy + Delta-G solvation = -3623.956617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42035 -40.69985 -39.71953 -36.89103 -35.79697 -34.68137 -33.37398 -32.84544 -29.79671 -29.31377 -27.66376 -26.65777 -26.11419 -24.91962 -24.30905 -23.59380 -22.70412 -20.24446 -19.96529 -18.72645 -18.17745 -17.70104 -17.23710 -17.06267 -16.88360 -16.48172 -16.37221 -15.98082 -15.90592 -15.50849 -14.96328 -14.63887 -14.33336 -14.20996 -14.14343 -13.94661 -13.63443 -13.47078 -13.27871 -13.08583 -12.82845 -12.76103 -12.70186 -12.59210 -12.49182 -12.45735 -12.09432 -11.78627 -11.70530 -11.41874 -11.11498 -10.80481 -10.70299 -10.57749 -10.35541 -9.93139 -9.49260 -9.27770 -8.21310 -6.36393 0.15092 0.41190 1.37892 1.40510 1.51337 1.74354 2.16755 2.40114 2.92309 3.08455 3.13329 3.39855 3.63966 3.75822 3.82195 3.90045 3.98247 4.03771 4.04923 4.20416 4.27398 4.29926 4.38688 4.53813 4.56777 4.60586 4.65471 4.71016 4.78251 4.87139 4.88242 4.91139 4.94554 5.04339 5.09737 5.11110 5.20407 5.25547 5.29075 5.34440 5.50161 5.60665 5.78121 5.83943 5.95365 6.04007 6.21258 6.55238 6.79246 7.13892 7.29687 7.39893 8.84884 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007042 B = 0.005922 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3975.324897 B = 4726.913949 C = 7582.478141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.518 5.518 3 C 0.054 3.946 4 C 0.519 3.481 5 O -0.563 6.563 6 N -0.592 5.592 7 C 0.261 3.739 8 C -0.545 4.545 9 H 0.053 0.947 10 C 0.021 3.979 11 N -0.919 5.919 12 Si 0.957 3.043 13 H -0.270 1.270 14 H -0.276 1.276 15 H -0.278 1.278 16 C 0.170 3.830 17 C 0.095 3.905 18 C -0.159 4.159 19 C -0.079 4.079 20 C -0.164 4.164 21 C 0.079 3.921 22 N -0.507 5.507 23 C 0.037 3.963 24 C -0.132 4.132 25 C -0.126 4.126 26 C -0.118 4.118 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.015 0.985 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.267 0.733 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.166 0.834 39 H 0.172 0.828 40 H 0.174 0.826 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 -12.046 -7.401 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.242 5.242 3 C -0.077 4.077 4 C 0.308 3.692 5 O -0.443 6.443 6 N -0.323 5.323 7 C 0.140 3.860 8 C -0.583 4.583 9 H 0.072 0.928 10 C -0.179 4.179 11 N -0.558 5.558 12 Si 0.783 3.217 13 H -0.194 1.194 14 H -0.202 1.202 15 H -0.203 1.203 16 C 0.046 3.954 17 C -0.043 4.043 18 C -0.180 4.180 19 C -0.105 4.105 20 C -0.184 4.184 21 C -0.078 4.078 22 N -0.217 5.217 23 C -0.071 4.071 24 C -0.170 4.170 25 C -0.164 4.164 26 C -0.156 4.156 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.034 0.966 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.152 0.848 38 H 0.183 0.817 39 H 0.190 0.810 40 H 0.191 0.809 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.423 -11.801 -7.533 14.007 hybrid contribution -0.618 0.932 1.017 1.511 sum -0.195 -10.869 -6.516 12.674 Atomic orbital electron populations 1.22419 0.86801 1.02628 1.00330 1.62044 1.08717 1.11010 1.42454 1.21727 1.01284 0.89961 0.94740 1.20591 0.78686 0.81114 0.88839 1.90508 1.41710 1.64581 1.47528 1.48132 1.54738 1.12529 1.16875 1.18989 0.90678 0.91195 0.85174 1.21682 0.93310 1.30705 1.12628 0.92836 1.25674 0.96584 0.96825 0.98846 1.70043 1.13126 1.41001 1.31679 0.85515 0.79154 0.78422 0.78651 1.19433 1.20179 1.20334 1.20110 0.94591 0.98468 0.82201 1.21613 0.94406 0.92693 0.95552 1.22144 1.01477 0.97917 0.96415 1.21980 0.92399 0.98949 0.97128 1.22517 0.99877 0.95497 1.00461 1.23270 0.96443 0.97298 0.90825 1.67495 1.01948 1.28952 1.23298 1.23432 0.97899 0.94421 0.91333 1.23010 0.95140 0.97653 1.01245 1.22708 0.95540 0.97333 1.00811 1.22922 0.97693 0.92723 1.02227 0.91606 0.89606 0.96617 0.89149 0.92537 0.96256 0.96152 0.92351 0.90219 0.88796 0.84792 0.81696 0.81036 0.80922 0.92373 0.90269 0.92057 0.89200 0.89768 0.90492 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.03 127.69 1.15 1.98 16 2 N -0.52 -17.49 4.46 -898.48 -4.00 -21.49 16 3 C 0.05 2.12 3.97 85.55 0.34 2.46 16 4 C 0.52 22.24 7.40 87.66 0.65 22.89 16 5 O -0.56 -24.43 13.85 -3.02 -0.04 -24.47 16 6 N -0.59 -26.38 2.44 -830.48 -2.03 -28.40 16 7 C 0.26 13.27 4.97 85.63 0.43 13.69 16 8 C -0.54 -29.34 9.28 25.60 0.24 -29.10 16 9 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 10 C 0.02 1.14 5.46 84.66 0.46 1.60 16 11 N -0.92 -52.26 13.29 21.45 0.28 -51.98 16 12 Si 0.96 42.76 29.54 68.60 2.03 44.79 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 16 C 0.17 6.86 5.72 85.63 0.49 7.35 16 17 C 0.10 3.54 6.36 42.55 0.27 3.81 16 18 C -0.16 -4.99 9.72 22.36 0.22 -4.78 16 19 C -0.08 -1.89 10.18 22.47 0.23 -1.66 16 20 C -0.16 -3.65 10.11 22.36 0.23 -3.43 16 21 C 0.08 2.26 11.18 84.67 0.95 3.20 16 22 N -0.51 -19.10 10.27 -183.88 -1.89 -20.99 16 23 C 0.04 1.04 3.18 45.44 0.14 1.18 16 24 C -0.13 -3.34 7.59 31.18 0.24 -3.10 16 25 C -0.13 -2.39 8.09 31.18 0.25 -2.14 16 26 C -0.12 -2.51 6.57 31.12 0.20 -2.31 16 27 H 0.07 2.40 5.88 -2.38 -0.01 2.38 16 28 H 0.09 2.26 7.00 -2.38 -0.02 2.25 16 29 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 3.64 7.11 -2.39 -0.02 3.62 16 31 H 0.06 2.43 7.98 -2.39 -0.02 2.41 16 32 H 0.02 1.03 6.44 -2.39 -0.02 1.02 16 33 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 34 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.08 3.36 8.07 -2.39 -0.02 3.34 16 36 H 0.09 3.56 7.32 -2.39 -0.02 3.54 16 37 H 0.13 4.22 8.01 -2.91 -0.02 4.20 16 38 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 43 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.09 1.91 7.97 -2.39 -0.02 1.89 16 Total: -1.00 -65.34 385.12 1.77 -63.57 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.94 Total: 27.31 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 6.48 Total: 11.66 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -7.63 Total: -122.86 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.04 Total: -24.47 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -65.34 1.77 -63.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900567785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.026 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds