Wall clock time and date at job start Tue Mar 31 2020 11:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48187 * 111.07701 * 2 1 4 4 C 1.53930 * 86.22611 * 137.46289 * 3 2 1 5 5 C 1.47954 * 111.00195 * 99.29375 * 2 1 3 6 6 H 1.08998 * 113.76197 * 336.84281 * 5 2 1 7 7 C 1.53002 * 113.76203 * 108.10210 * 5 2 1 8 8 N 1.46501 * 109.46650 * 283.68710 * 7 5 2 9 9 C 1.34779 * 119.99942 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99847 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00097 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99919 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47182 * 34.99716 * 12 11 9 14 14 C 1.53001 * 109.46932 * 154.99673 * 12 11 9 15 15 C 1.50694 * 109.47168 * 294.99942 * 14 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.50701 * 109.47172 * 274.99749 * 12 11 9 24 24 C 1.38236 * 119.99946 * 319.72607 * 23 12 11 25 25 C 1.38237 * 119.99928 * 179.78734 * 24 23 12 26 26 C 1.38227 * 119.99981 * 0.46504 * 25 24 23 27 27 C 1.38234 * 120.00053 * 359.76908 * 26 25 24 28 28 C 1.38227 * 120.00009 * 140.00037 * 23 12 11 29 29 H 1.08998 * 109.46926 * 320.70416 * 1 2 3 30 30 H 1.08998 * 109.46972 * 80.70253 * 1 2 3 31 31 H 1.09000 * 109.46756 * 200.70790 * 1 2 3 32 32 H 1.09004 * 113.65440 * 23.13685 * 3 2 1 33 33 H 1.08994 * 113.92710 * 251.82785 * 3 2 1 34 34 H 1.08997 * 113.73979 * 222.01711 * 4 3 2 35 35 H 1.09000 * 113.73437 * 90.72830 * 4 3 2 36 36 H 1.08999 * 109.47220 * 163.68910 * 7 5 2 37 37 H 1.09002 * 109.46865 * 43.67978 * 7 5 2 38 38 H 0.97003 * 120.00077 * 359.97438 * 8 7 5 39 39 H 0.97003 * 119.99923 * 359.97438 * 11 9 8 40 40 H 1.09007 * 109.46922 * 174.99643 * 14 12 11 41 41 H 1.09003 * 109.46836 * 55.00399 * 14 12 11 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.08001 * 119.99844 * 359.97438 * 24 23 12 44 44 H 1.07999 * 119.99843 * 180.25263 * 25 24 23 45 45 H 1.08001 * 120.00324 * 179.79174 * 26 25 24 46 46 H 1.08008 * 120.00056 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.00211 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3827 0.0000 4 6 3.0216 0.8812 1.0384 5 6 1.9993 -0.2231 1.3631 6 1 1.3004 0.0448 2.1555 7 6 2.6264 -1.6044 1.5623 8 7 1.5667 -2.6065 1.6994 9 6 1.8851 -3.9029 1.8855 10 8 3.0519 -4.2406 1.9391 11 7 0.9102 -4.8250 2.0111 12 6 1.2563 -6.2341 2.2128 13 1 2.1571 -6.3033 2.8228 14 6 0.1033 -6.9458 2.9235 15 6 -0.0630 -6.3740 4.3078 16 1 0.5882 -5.5819 4.6468 17 6 -1.0466 -6.8621 5.1417 18 7 -1.8400 -7.8263 4.7288 19 14 -1.2522 -6.1538 6.8579 20 1 -0.4103 -6.9180 7.8131 21 1 -0.8333 -4.7291 6.8589 22 1 -2.6768 -6.2511 7.2661 23 6 1.5027 -6.8871 0.8772 24 6 0.6909 -6.5850 -0.2001 25 6 0.9196 -7.1806 -1.4264 26 6 1.9542 -8.0855 -1.5730 27 6 2.7630 -8.3912 -0.4945 28 6 2.5370 -7.7923 0.7307 29 1 -0.3633 0.7953 0.6508 30 1 -0.3633 0.1660 -1.0142 31 1 -0.3633 -0.9613 0.3634 32 1 1.3025 2.1210 0.3923 33 1 2.4508 1.6835 -0.9466 34 1 3.1905 1.5778 1.8595 35 1 3.9467 0.5073 0.5998 36 1 3.2397 -1.5985 2.4633 37 1 3.2482 -1.8486 0.7010 38 1 0.6358 -2.3370 1.6570 39 1 -0.0207 -4.5556 1.9680 40 1 0.3225 -8.0112 2.9943 41 1 -0.8170 -6.8010 2.3575 42 1 -2.5317 -8.1699 5.3157 43 1 -0.1203 -5.8813 -0.0844 44 1 0.2879 -6.9414 -2.2691 45 1 2.1308 -8.5534 -2.5302 46 1 3.5717 -9.0980 -0.6092 47 1 3.1688 -8.0314 1.5734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921582346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:44 Heat of formation + Delta-G solvation = 23.887482 kcal Electronic energy + Delta-G solvation = -26558.171339 eV Core-core repulsion = 22934.580209 eV Total energy + Delta-G solvation = -3623.591130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.35967 -39.52668 -38.43426 -35.31522 -34.08513 -32.68794 -31.22755 -30.74962 -30.36884 -28.87635 -27.91644 -24.85675 -24.37617 -23.31559 -22.21817 -21.88275 -20.70420 -19.99692 -19.62284 -17.86435 -16.87093 -16.38807 -16.12643 -15.91366 -15.35938 -15.11085 -14.91932 -14.54384 -14.49328 -14.27922 -13.69061 -13.40569 -13.33342 -13.19730 -12.92001 -12.67708 -12.46952 -12.07451 -12.04651 -11.74269 -11.71582 -11.48896 -11.08712 -11.05797 -10.99521 -10.87302 -10.69048 -10.57806 -10.39698 -9.73398 -9.60293 -9.26162 -9.09321 -8.80269 -8.47451 -8.42038 -8.21030 -8.09415 -6.07062 -4.09906 1.86153 1.88509 3.16709 3.27965 3.34869 3.37832 3.60164 3.81486 4.20775 4.29056 4.41306 4.49448 4.76675 4.89526 4.90948 5.04398 5.08591 5.18179 5.29716 5.33580 5.35078 5.36745 5.44940 5.47760 5.61981 5.64112 5.69980 5.79024 5.96862 5.98968 6.02024 6.11955 6.23007 6.43684 6.50366 6.65048 6.73683 6.83703 6.92283 6.93025 7.04344 7.18572 7.39455 7.48792 7.55870 7.73614 7.90450 8.29310 8.60456 8.96227 9.19590 9.54698 11.03546 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008177 B = 0.004397 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.376312 B = 6365.880409 C = 8833.152976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.476 5.476 3 C -0.001 4.001 4 C -0.136 4.136 5 C 0.015 3.985 6 H 0.084 0.916 7 C 0.163 3.837 8 N -0.750 5.750 9 C 0.704 3.296 10 O -0.599 6.599 11 N -0.717 5.717 12 C 0.202 3.798 13 H 0.086 0.914 14 C 0.024 3.976 15 C -0.517 4.517 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.275 1.275 22 H -0.287 1.287 23 C -0.070 4.070 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.390 0.610 39 H 0.395 0.605 40 H 0.035 0.965 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 14.039 -10.897 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.199 5.199 3 C -0.130 4.130 4 C -0.174 4.174 5 C -0.094 4.094 6 H 0.102 0.898 7 C 0.038 3.962 8 N -0.406 5.406 9 C 0.404 3.596 10 O -0.478 6.478 11 N -0.369 5.369 12 C 0.098 3.902 13 H 0.104 0.896 14 C -0.014 4.014 15 C -0.556 4.556 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.200 1.200 22 H -0.213 1.213 23 C -0.071 4.071 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.127 4.127 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.223 0.777 39 H 0.229 0.771 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.994 13.140 -11.309 18.344 hybrid contribution -1.627 1.087 1.537 2.488 sum 4.367 14.227 -9.772 17.804 Atomic orbital electron populations 1.22888 0.89542 1.01485 1.02133 1.68596 1.09153 1.18226 1.23897 1.23935 0.97350 0.91312 1.00362 1.23312 0.98305 0.96893 0.98876 1.23780 0.97679 0.95957 0.92003 0.89773 1.20974 0.89493 0.83964 1.01807 1.45017 1.09351 1.06115 1.80136 1.15981 0.85495 0.80458 0.77667 1.90869 1.17794 1.80189 1.58903 1.45118 1.07977 1.07121 1.76714 1.20094 1.01581 0.77968 0.90604 0.89621 1.19397 0.91237 0.95993 0.94752 1.21149 1.16143 1.19836 0.98441 0.92383 1.24988 0.95826 0.95015 0.98351 1.69964 1.19776 1.26902 1.36524 0.86601 0.77138 0.79486 0.84800 1.20624 1.19992 1.21316 1.20603 0.94055 0.95950 0.96502 1.20881 0.99142 0.99815 0.92557 1.21025 0.98222 0.97872 0.97264 1.20973 0.96689 0.99330 0.98418 1.21032 0.99636 1.00220 0.93272 1.21014 0.97393 0.96926 0.97320 0.94726 0.91048 0.91226 0.91303 0.89238 0.90619 0.88591 0.91342 0.91042 0.77674 0.77119 0.94719 0.95797 0.92923 0.86722 0.86867 0.86936 0.86679 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.65 60.07 0.58 0.48 16 2 N -0.48 -4.64 6.37 -237.96 -1.52 -6.15 16 3 C 0.00 -0.01 7.98 -2.64 -0.02 -0.03 16 4 C -0.14 -1.03 7.86 -25.79 -0.20 -1.23 16 5 C 0.02 0.15 3.34 -66.65 -0.22 -0.08 16 6 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 7 C 0.16 2.07 5.71 -4.04 -0.02 2.04 16 8 N -0.75 -10.83 5.56 -65.22 -0.36 -11.19 16 9 C 0.70 13.25 8.52 -86.92 -0.74 12.51 16 10 O -0.60 -13.49 16.01 5.29 0.08 -13.40 16 11 N -0.72 -13.43 4.05 -59.81 -0.24 -13.67 16 12 C 0.20 4.26 2.11 -69.08 -0.15 4.11 16 13 H 0.09 1.98 7.44 -51.93 -0.39 1.60 16 14 C 0.02 0.57 4.49 -27.89 -0.13 0.45 16 15 C -0.52 -13.81 8.84 -34.44 -0.30 -14.11 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 C -0.07 -1.35 4.91 -104.63 -0.51 -1.86 16 24 C -0.11 -1.86 9.32 -39.58 -0.37 -2.23 16 25 C -0.13 -1.96 10.05 -39.59 -0.40 -2.36 16 26 C -0.14 -2.04 10.05 -39.59 -0.40 -2.43 16 27 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 28 C -0.11 -1.97 9.67 -39.58 -0.38 -2.35 16 29 H 0.03 0.26 7.62 -51.93 -0.40 -0.14 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.61 7.15 -51.93 -0.37 0.24 16 32 H 0.07 0.44 7.62 -51.93 -0.40 0.05 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.39 4.76 7.49 -40.82 -0.31 4.46 16 39 H 0.40 6.76 8.62 -40.82 -0.35 6.41 16 40 H 0.03 0.92 8.14 -51.92 -0.42 0.49 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.11 1.90 7.73 -52.49 -0.41 1.50 16 44 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 47 H 0.12 2.09 8.04 -52.49 -0.42 1.67 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -32.40 389.07 -11.85 -44.26 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -7.63 Total: 11.05 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.76 Total: -7.89 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -1.38 Total: -55.98 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.40 -11.85 -44.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921582346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.146 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds