Wall clock time and date at job start Tue Mar 31 2020 11:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48187 * 111.07701 * 2 1 4 4 C 1.53930 * 86.22611 * 137.46289 * 3 2 1 5 5 C 1.47954 * 111.00195 * 99.29375 * 2 1 3 6 6 H 1.08998 * 113.76197 * 336.84281 * 5 2 1 7 7 C 1.53002 * 113.76203 * 108.10210 * 5 2 1 8 8 N 1.46501 * 109.46650 * 283.68710 * 7 5 2 9 9 C 1.34779 * 119.99942 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99847 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00097 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99919 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47182 * 34.99716 * 12 11 9 14 14 C 1.53001 * 109.46932 * 154.99673 * 12 11 9 15 15 C 1.50694 * 109.47168 * 294.99942 * 14 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.50701 * 109.47172 * 274.99749 * 12 11 9 24 24 C 1.38236 * 119.99946 * 319.72607 * 23 12 11 25 25 C 1.38237 * 119.99928 * 179.78734 * 24 23 12 26 26 C 1.38227 * 119.99981 * 0.46504 * 25 24 23 27 27 C 1.38234 * 120.00053 * 359.76908 * 26 25 24 28 28 C 1.38227 * 120.00009 * 140.00037 * 23 12 11 29 29 H 1.08998 * 109.46926 * 320.70416 * 1 2 3 30 30 H 1.08998 * 109.46972 * 80.70253 * 1 2 3 31 31 H 1.09000 * 109.46756 * 200.70790 * 1 2 3 32 32 H 1.09004 * 113.65440 * 23.13685 * 3 2 1 33 33 H 1.08994 * 113.92710 * 251.82785 * 3 2 1 34 34 H 1.08997 * 113.73979 * 222.01711 * 4 3 2 35 35 H 1.09000 * 113.73437 * 90.72830 * 4 3 2 36 36 H 1.08999 * 109.47220 * 163.68910 * 7 5 2 37 37 H 1.09002 * 109.46865 * 43.67978 * 7 5 2 38 38 H 0.97003 * 120.00077 * 359.97438 * 8 7 5 39 39 H 0.97003 * 119.99923 * 359.97438 * 11 9 8 40 40 H 1.09007 * 109.46922 * 174.99643 * 14 12 11 41 41 H 1.09003 * 109.46836 * 55.00399 * 14 12 11 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.08001 * 119.99844 * 359.97438 * 24 23 12 44 44 H 1.07999 * 119.99843 * 180.25263 * 25 24 23 45 45 H 1.08001 * 120.00324 * 179.79174 * 26 25 24 46 46 H 1.08008 * 120.00056 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.00211 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3827 0.0000 4 6 3.0216 0.8812 1.0384 5 6 1.9993 -0.2231 1.3631 6 1 1.3004 0.0448 2.1555 7 6 2.6264 -1.6044 1.5623 8 7 1.5667 -2.6065 1.6994 9 6 1.8851 -3.9029 1.8855 10 8 3.0519 -4.2406 1.9391 11 7 0.9102 -4.8250 2.0111 12 6 1.2563 -6.2341 2.2128 13 1 2.1571 -6.3033 2.8228 14 6 0.1033 -6.9458 2.9235 15 6 -0.0630 -6.3740 4.3078 16 1 0.5882 -5.5819 4.6468 17 6 -1.0466 -6.8621 5.1417 18 7 -1.8400 -7.8263 4.7288 19 14 -1.2522 -6.1538 6.8579 20 1 -0.4103 -6.9180 7.8131 21 1 -0.8333 -4.7291 6.8589 22 1 -2.6768 -6.2511 7.2661 23 6 1.5027 -6.8871 0.8772 24 6 0.6909 -6.5850 -0.2001 25 6 0.9196 -7.1806 -1.4264 26 6 1.9542 -8.0855 -1.5730 27 6 2.7630 -8.3912 -0.4945 28 6 2.5370 -7.7923 0.7307 29 1 -0.3633 0.7953 0.6508 30 1 -0.3633 0.1660 -1.0142 31 1 -0.3633 -0.9613 0.3634 32 1 1.3025 2.1210 0.3923 33 1 2.4508 1.6835 -0.9466 34 1 3.1905 1.5778 1.8595 35 1 3.9467 0.5073 0.5998 36 1 3.2397 -1.5985 2.4633 37 1 3.2482 -1.8486 0.7010 38 1 0.6358 -2.3370 1.6570 39 1 -0.0207 -4.5556 1.9680 40 1 0.3225 -8.0112 2.9943 41 1 -0.8170 -6.8010 2.3575 42 1 -2.5317 -8.1699 5.3157 43 1 -0.1203 -5.8813 -0.0844 44 1 0.2879 -6.9414 -2.2691 45 1 2.1308 -8.5534 -2.5302 46 1 3.5717 -9.0980 -0.6092 47 1 3.1688 -8.0314 1.5734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921582346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:42 Heat of formation + Delta-G solvation = 1.633471 kcal Electronic energy + Delta-G solvation = -26559.136346 eV Core-core repulsion = 22934.580209 eV Total energy + Delta-G solvation = -3624.556136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.37980 -40.73791 -39.77495 -36.90228 -35.47961 -34.70416 -32.55340 -31.70844 -31.53304 -30.54677 -29.04493 -26.62008 -25.02799 -24.27692 -23.77179 -23.33045 -22.13890 -21.29914 -20.64290 -19.23746 -18.62027 -17.78374 -17.32647 -17.08773 -16.52167 -16.35852 -16.21521 -16.04019 -15.78710 -15.47132 -14.93038 -14.89168 -14.51716 -14.20270 -14.17415 -14.01721 -13.90127 -13.65145 -13.41956 -13.03994 -12.89056 -12.64617 -12.45397 -12.39376 -12.35566 -12.12767 -11.86372 -11.81289 -11.69557 -11.57121 -11.31890 -11.19560 -10.58475 -10.26262 -9.76960 -9.75082 -9.66746 -9.48855 -8.19600 -6.29566 0.53145 0.57774 1.39088 1.40964 1.50848 1.83897 2.27823 2.40281 2.88454 2.98068 3.13796 3.41934 3.60556 3.82014 4.02077 4.05341 4.10155 4.17243 4.22254 4.33247 4.34550 4.42430 4.46436 4.54273 4.66475 4.67851 4.77121 4.80653 4.81482 4.87543 4.98446 4.99457 5.14567 5.21486 5.25231 5.30736 5.39725 5.44144 5.56759 5.62693 5.64301 5.66117 5.78964 5.90191 6.10361 6.13261 6.17963 6.22723 6.82814 7.18851 7.39278 7.69923 8.91185 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008177 B = 0.004397 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.376312 B = 6365.880409 C = 8833.152976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.500 5.500 3 C 0.005 3.995 4 C -0.129 4.129 5 C 0.019 3.981 6 H 0.095 0.905 7 C 0.163 3.837 8 N -0.733 5.733 9 C 0.701 3.299 10 O -0.639 6.639 11 N -0.713 5.713 12 C 0.219 3.781 13 H 0.055 0.945 14 C 0.039 3.961 15 C -0.528 4.528 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.957 3.043 20 H -0.279 1.279 21 H -0.267 1.267 22 H -0.280 1.280 23 C -0.097 4.097 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.134 4.134 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.403 0.597 39 H 0.403 0.597 40 H 0.005 0.995 41 H 0.012 0.988 42 H 0.264 0.736 43 H 0.118 0.882 44 H 0.145 0.855 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.618 15.627 -12.012 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.223 5.223 3 C -0.124 4.124 4 C -0.167 4.167 5 C -0.090 4.090 6 H 0.113 0.887 7 C 0.039 3.961 8 N -0.389 5.389 9 C 0.401 3.599 10 O -0.521 6.521 11 N -0.365 5.365 12 C 0.113 3.887 13 H 0.074 0.926 14 C 0.001 3.999 15 C -0.566 4.566 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.783 3.217 20 H -0.205 1.205 21 H -0.192 1.192 22 H -0.206 1.206 23 C -0.098 4.098 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.152 4.152 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.239 0.761 39 H 0.238 0.762 40 H 0.023 0.977 41 H 0.030 0.970 42 H 0.073 0.927 43 H 0.136 0.864 44 H 0.163 0.837 45 H 0.169 0.831 46 H 0.162 0.838 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.667 14.776 -12.437 20.128 hybrid contribution -1.504 0.567 1.796 2.411 sum 4.163 15.343 -10.640 19.130 Atomic orbital electron populations 1.22904 0.89009 1.01604 1.02592 1.68569 1.09915 1.20044 1.23793 1.23984 0.97261 0.90461 1.00654 1.23305 0.97702 0.96224 0.99500 1.23727 0.98675 0.94128 0.92513 0.88679 1.21075 0.89134 0.85242 1.00697 1.44928 1.10651 1.04757 1.78543 1.16128 0.84718 0.81563 0.77502 1.90835 1.19400 1.81099 1.60737 1.44918 1.08437 1.06444 1.76724 1.19569 0.98571 0.79112 0.91422 0.92647 1.19130 0.91946 0.94491 0.94294 1.21385 1.15950 1.19667 0.99578 0.92966 1.25775 0.95476 0.95274 1.02214 1.70075 1.20397 1.28102 1.38027 0.85569 0.77269 0.78985 0.79913 1.20457 1.19162 1.20551 1.20496 0.95885 0.97380 0.96060 1.21033 0.99168 1.00520 0.93118 1.21423 0.98620 0.97153 0.97159 1.21456 0.95421 0.98302 0.99599 1.21388 1.00408 1.00012 0.92354 1.21182 0.97653 0.97734 0.98653 0.93392 0.90826 0.91936 0.89728 0.88766 0.88768 0.89076 0.92027 0.92786 0.76149 0.76220 0.97711 0.96971 0.92726 0.86407 0.83736 0.83101 0.83803 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 9.65 127.69 1.23 1.04 16 2 N -0.50 -8.95 6.37 -906.76 -5.77 -14.72 16 3 C 0.00 0.06 7.98 86.36 0.69 0.75 16 4 C -0.13 -1.71 7.86 31.24 0.25 -1.47 16 5 C 0.02 0.34 3.34 45.02 0.15 0.49 16 6 H 0.10 1.49 7.92 -2.39 -0.02 1.47 16 7 C 0.16 4.14 5.71 86.38 0.49 4.63 16 8 N -0.73 -21.25 5.56 -478.52 -2.66 -23.91 16 9 C 0.70 27.18 8.52 179.05 1.53 28.71 16 10 O -0.64 -29.96 16.01 -4.00 -0.06 -30.03 16 11 N -0.71 -27.70 4.05 -461.41 -1.87 -29.56 16 12 C 0.22 9.74 2.11 44.25 0.09 9.83 16 13 H 0.06 2.76 7.44 -2.39 -0.02 2.75 16 14 C 0.04 1.99 4.49 29.85 0.13 2.12 16 15 C -0.53 -29.02 8.84 25.60 0.23 -28.80 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 17 C 0.01 0.62 5.46 84.66 0.46 1.08 16 18 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16 19 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.10 -3.89 4.91 -19.87 -0.10 -3.98 16 24 C -0.12 -4.23 9.32 22.27 0.21 -4.03 16 25 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 26 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 27 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 28 C -0.13 -5.01 9.67 22.27 0.22 -4.79 16 29 H 0.05 0.60 7.62 -2.39 -0.02 0.58 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.03 7.15 -2.39 -0.02 1.01 16 32 H 0.08 0.82 7.62 -2.38 -0.02 0.80 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.40 9.64 7.49 -92.71 -0.69 8.94 16 39 H 0.40 14.17 8.62 -92.71 -0.80 13.37 16 40 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 41 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.12 3.94 7.73 -2.91 -0.02 3.91 16 44 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 45 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 46 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 47 H 0.11 4.20 8.04 -2.91 -0.02 4.18 16 Total: -1.00 -71.85 389.07 -2.33 -74.19 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.53 Total: 37.08 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 6.25 Total: -4.67 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -10.02 Total: -122.21 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.06 Total: -30.03 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -71.85 -2.33 -74.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921582346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.820 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds