Wall clock time and date at job start Tue Mar 31 2020 11:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47953 * 111.00067 * 2 1 4 4 C 1.53939 * 86.18244 * 222.41897 * 3 2 1 5 5 C 1.47957 * 110.99767 * 260.63759 * 2 1 3 6 6 H 1.08996 * 113.86322 * 23.25726 * 5 2 1 7 7 C 1.53000 * 113.76383 * 251.89721 * 5 2 1 8 8 N 1.46504 * 109.46946 * 78.44039 * 7 5 2 9 9 C 1.34770 * 120.00530 * 180.02562 * 8 7 5 10 10 O 1.21595 * 119.99432 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00474 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99845 * 175.11833 * 11 9 8 13 13 H 1.08997 * 109.47112 * 328.50386 * 12 11 9 14 14 C 1.52997 * 109.46828 * 88.50496 * 12 11 9 15 15 C 1.50700 * 109.47019 * 185.78227 * 14 12 11 16 16 H 1.08007 * 120.00190 * 5.04467 * 15 14 12 17 17 C 1.37878 * 120.00517 * 185.04061 * 15 14 12 18 18 N 1.31520 * 119.99406 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00344 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47043 * 60.00101 * 19 17 15 21 21 H 1.48498 * 109.47035 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46928 * 299.99896 * 19 17 15 23 23 C 1.50703 * 109.46643 * 208.50375 * 12 11 9 24 24 C 1.38239 * 119.99990 * 319.72469 * 23 12 11 25 25 C 1.38230 * 119.99672 * 180.32835 * 24 23 12 26 26 C 1.38234 * 120.00493 * 359.94756 * 25 24 23 27 27 C 1.38245 * 119.99602 * 0.02835 * 26 25 24 28 28 C 1.38232 * 119.99937 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47177 * 159.36130 * 1 2 3 30 30 H 1.08998 * 109.47112 * 279.35926 * 1 2 3 31 31 H 1.08997 * 109.47545 * 39.35754 * 1 2 3 32 32 H 1.09001 * 113.76420 * 108.10224 * 3 2 1 33 33 H 1.08998 * 113.86214 * 336.74777 * 3 2 1 34 34 H 1.08994 * 113.73439 * 269.36225 * 4 3 2 35 35 H 1.09002 * 113.82914 * 138.08786 * 4 3 2 36 36 H 1.08997 * 109.47046 * 318.44907 * 7 5 2 37 37 H 1.09000 * 109.47618 * 198.43934 * 7 5 2 38 38 H 0.97004 * 119.99622 * 0.02562 * 8 7 5 39 39 H 0.97000 * 119.99845 * 355.11860 * 11 9 8 40 40 H 1.08995 * 109.47352 * 305.78199 * 14 12 11 41 41 H 1.08996 * 109.47447 * 65.78684 * 14 12 11 42 42 H 0.97002 * 119.99541 * 179.97438 * 18 17 15 43 43 H 1.07999 * 120.00112 * 0.28138 * 24 23 12 44 44 H 1.08001 * 120.00272 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00590 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.99954 * 179.97438 * 27 26 25 47 47 H 1.08003 * 119.99636 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8792 -1.0361 5 6 1.9992 -0.2247 -1.3629 6 1 1.3022 0.0433 -2.1569 7 6 2.6263 -1.6062 -1.5605 8 7 1.5672 -2.6011 -1.7471 9 6 1.8856 -3.8964 -1.9397 10 8 3.0521 -4.2392 -1.9591 11 7 0.9113 -4.8116 -2.1118 12 6 1.2576 -6.1996 -2.4274 13 1 2.1788 -6.2209 -3.0096 14 6 1.4567 -6.9834 -1.1287 15 6 1.9504 -8.3706 -1.4498 16 1 2.1842 -8.6380 -2.4697 17 6 2.1036 -9.2985 -0.4415 18 7 1.8184 -8.9731 0.8004 19 14 2.7161 -11.0178 -0.8395 20 1 4.0642 -10.9324 -1.4564 21 1 2.7924 -11.8175 0.4094 22 1 1.7781 -11.6702 -1.7879 23 6 0.1438 -6.8259 -3.2265 24 6 -1.1735 -6.5630 -2.9000 25 6 -2.1950 -7.1429 -3.6287 26 6 -1.8994 -7.9847 -4.6845 27 6 -0.5821 -8.2472 -5.0112 28 6 0.4395 -7.6683 -4.2819 29 1 -0.3633 -0.9617 -0.3622 30 1 -0.3633 0.1671 1.0140 31 1 -0.3634 0.7946 -0.6517 32 1 2.4460 1.6802 0.9482 33 1 1.3022 2.1211 -0.3935 34 1 3.9451 0.5051 -0.5953 35 1 3.1933 1.5747 -1.8575 36 1 3.2178 -1.8657 -0.6825 37 1 3.2694 -1.5909 -2.4404 38 1 0.6366 -2.3275 -1.7320 39 1 -0.0192 -4.5511 -2.0268 40 1 2.1897 -6.4724 -0.5046 41 1 0.5085 -7.0497 -0.5952 42 1 1.9258 -9.6260 1.5097 43 1 -1.4045 -5.9052 -2.0752 44 1 -3.2242 -6.9379 -3.3734 45 1 -2.6976 -8.4375 -5.2541 46 1 -0.3511 -8.9053 -5.8358 47 1 1.4687 -7.8737 -4.5369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921582349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:47 Heat of formation + Delta-G solvation = 28.748898 kcal Electronic energy + Delta-G solvation = -26358.736189 eV Core-core repulsion = 22735.355866 eV Total energy + Delta-G solvation = -3623.380323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.40054 -39.56886 -38.53902 -35.26624 -34.11690 -32.72737 -31.22451 -30.78161 -30.38302 -28.70607 -27.97104 -24.78623 -24.39886 -23.28272 -22.32113 -22.00887 -20.72422 -20.00914 -19.52469 -18.13960 -16.87486 -16.42846 -16.00416 -15.81810 -15.40048 -15.07666 -14.76425 -14.64793 -14.37039 -14.33322 -13.68999 -13.47673 -13.40339 -13.16030 -12.91239 -12.70517 -12.45614 -12.14556 -12.04822 -11.76056 -11.71028 -11.43710 -11.11625 -11.06233 -11.00582 -10.78752 -10.70277 -10.58235 -9.92822 -9.89923 -9.67480 -9.11755 -9.07405 -8.83441 -8.43614 -8.37831 -8.26595 -7.94360 -5.92531 -3.93587 1.85921 1.89184 3.08130 3.39524 3.43018 3.45833 3.57747 3.76495 4.18715 4.29448 4.44783 4.52855 4.70449 4.83990 4.86891 5.00797 5.04982 5.14930 5.29992 5.32034 5.36112 5.41230 5.45157 5.46341 5.56601 5.61602 5.67102 5.77905 5.94923 5.96599 6.03046 6.12351 6.22799 6.43382 6.55334 6.69861 6.79330 6.82256 6.88474 6.93472 6.98615 7.19114 7.29636 7.47945 7.75292 7.84013 8.06833 8.44186 8.48491 9.07722 9.15295 9.68710 11.19165 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.003348 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.667477 B = 8362.022167 C = 9728.401007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.475 5.475 3 C -0.001 4.001 4 C -0.136 4.136 5 C 0.016 3.984 6 H 0.083 0.917 7 C 0.160 3.840 8 N -0.751 5.751 9 C 0.703 3.297 10 O -0.584 6.584 11 N -0.738 5.738 12 C 0.198 3.802 13 H 0.087 0.913 14 C 0.025 3.975 15 C -0.511 4.511 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.890 3.110 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.046 4.046 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.098 4.098 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.388 0.612 39 H 0.386 0.614 40 H 0.026 0.974 41 H 0.021 0.979 42 H 0.260 0.740 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.641 18.687 -7.498 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.198 5.198 3 C -0.130 4.130 4 C -0.174 4.174 5 C -0.094 4.094 6 H 0.101 0.899 7 C 0.035 3.965 8 N -0.407 5.407 9 C 0.403 3.597 10 O -0.461 6.461 11 N -0.392 5.392 12 C 0.095 3.905 13 H 0.105 0.895 14 C -0.013 4.013 15 C -0.550 4.550 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.046 4.046 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.154 4.154 27 C -0.139 4.139 28 C -0.117 4.117 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.221 0.779 39 H 0.219 0.781 40 H 0.044 0.956 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.380 17.822 -6.812 19.824 hybrid contribution -1.135 -0.348 -0.493 1.285 sum -6.515 17.474 -7.305 20.029 Atomic orbital electron populations 1.22882 0.89610 1.01287 1.02223 1.68575 1.09143 1.18245 1.23847 1.23900 0.97332 0.91248 1.00486 1.23324 0.98390 0.96814 0.98873 1.23771 0.97671 0.95957 0.91965 0.89908 1.21018 0.89435 0.84021 1.01979 1.45050 1.09327 1.06388 1.79954 1.15909 0.85483 0.80315 0.77990 1.90941 1.17605 1.79616 1.57918 1.45424 1.07732 1.09755 1.76305 1.20180 0.94464 0.77455 0.98424 0.89478 1.19429 0.97673 0.94125 0.90106 1.21028 1.43980 0.96122 0.93826 0.92509 1.24943 0.95598 0.98565 0.95026 1.69964 1.48950 1.34863 0.99590 0.86690 0.79470 0.84545 0.77544 1.20177 1.21384 1.20268 1.19971 0.94202 0.96422 0.94041 1.20813 0.92460 1.01012 0.99388 1.20963 0.98519 0.98216 0.96331 1.20968 0.96283 0.99725 0.98433 1.21038 0.92940 0.99948 0.99994 1.20976 0.99334 0.96614 0.94757 0.91329 0.90966 0.94824 0.89165 0.91317 0.88470 0.90640 0.90686 0.91234 0.77927 0.78064 0.95611 0.96054 0.93060 0.86851 0.86811 0.86936 0.86654 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.06 0.58 0.49 16 2 N -0.48 -4.62 6.36 -238.96 -1.52 -6.14 16 3 C 0.00 -0.01 7.96 -2.77 -0.02 -0.03 16 4 C -0.14 -1.00 7.85 -25.79 -0.20 -1.20 16 5 C 0.02 0.14 3.35 -66.65 -0.22 -0.08 16 6 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 7 C 0.16 1.99 5.71 -4.04 -0.02 1.96 16 8 N -0.75 -10.30 5.56 -65.22 -0.36 -10.66 16 9 C 0.70 13.16 8.55 -86.92 -0.74 12.42 16 10 O -0.58 -13.72 16.00 5.28 0.08 -13.63 16 11 N -0.74 -13.18 5.01 -59.81 -0.30 -13.48 16 12 C 0.20 4.23 2.21 -69.08 -0.15 4.07 16 13 H 0.09 2.02 7.40 -51.93 -0.38 1.64 16 14 C 0.02 0.65 4.74 -27.88 -0.13 0.52 16 15 C -0.51 -14.53 8.53 -34.44 -0.29 -14.83 16 16 H 0.06 1.55 6.79 -52.48 -0.36 1.20 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 19 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.05 -0.87 4.50 -104.62 -0.47 -1.34 16 24 C -0.12 -1.99 9.08 -39.58 -0.36 -2.35 16 25 C -0.12 -1.83 10.05 -39.59 -0.40 -2.22 16 26 C -0.14 -2.00 10.05 -39.58 -0.40 -2.39 16 27 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 28 C -0.10 -1.79 8.83 -39.59 -0.35 -2.14 16 29 H 0.07 0.57 7.30 -51.93 -0.38 0.19 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.23 7.62 -51.93 -0.40 -0.17 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.41 7.62 -51.93 -0.40 0.02 16 34 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.39 4.21 7.65 -40.82 -0.31 3.90 16 39 H 0.39 5.63 6.91 -40.82 -0.28 5.35 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.02 0.59 8.13 -51.93 -0.42 0.17 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.11 1.72 6.88 -52.49 -0.36 1.35 16 44 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 46 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 47 H 0.12 2.17 7.85 -52.48 -0.41 1.76 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -35.14 385.15 -11.73 -46.87 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.47 Total: 8.52 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.68 Total: -7.77 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -1.45 Total: -57.04 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.14 -11.73 -46.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921582349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.619 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds