Wall clock time and date at job start Tue Mar 31 2020 11:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47953 * 111.00067 * 2 1 4 4 C 1.53939 * 86.18244 * 222.41897 * 3 2 1 5 5 C 1.47957 * 110.99767 * 260.63759 * 2 1 3 6 6 H 1.08996 * 113.86322 * 23.25726 * 5 2 1 7 7 C 1.53000 * 113.76383 * 251.89721 * 5 2 1 8 8 N 1.46504 * 109.46946 * 78.44039 * 7 5 2 9 9 C 1.34770 * 120.00530 * 180.02562 * 8 7 5 10 10 O 1.21595 * 119.99432 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00474 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99845 * 175.11833 * 11 9 8 13 13 H 1.08997 * 109.47112 * 328.50386 * 12 11 9 14 14 C 1.52997 * 109.46828 * 88.50496 * 12 11 9 15 15 C 1.50700 * 109.47019 * 185.78227 * 14 12 11 16 16 H 1.08007 * 120.00190 * 5.04467 * 15 14 12 17 17 C 1.37878 * 120.00517 * 185.04061 * 15 14 12 18 18 N 1.31520 * 119.99406 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00344 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47043 * 60.00101 * 19 17 15 21 21 H 1.48498 * 109.47035 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46928 * 299.99896 * 19 17 15 23 23 C 1.50703 * 109.46643 * 208.50375 * 12 11 9 24 24 C 1.38239 * 119.99990 * 319.72469 * 23 12 11 25 25 C 1.38230 * 119.99672 * 180.32835 * 24 23 12 26 26 C 1.38234 * 120.00493 * 359.94756 * 25 24 23 27 27 C 1.38245 * 119.99602 * 0.02835 * 26 25 24 28 28 C 1.38232 * 119.99937 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47177 * 159.36130 * 1 2 3 30 30 H 1.08998 * 109.47112 * 279.35926 * 1 2 3 31 31 H 1.08997 * 109.47545 * 39.35754 * 1 2 3 32 32 H 1.09001 * 113.76420 * 108.10224 * 3 2 1 33 33 H 1.08998 * 113.86214 * 336.74777 * 3 2 1 34 34 H 1.08994 * 113.73439 * 269.36225 * 4 3 2 35 35 H 1.09002 * 113.82914 * 138.08786 * 4 3 2 36 36 H 1.08997 * 109.47046 * 318.44907 * 7 5 2 37 37 H 1.09000 * 109.47618 * 198.43934 * 7 5 2 38 38 H 0.97004 * 119.99622 * 0.02562 * 8 7 5 39 39 H 0.97000 * 119.99845 * 355.11860 * 11 9 8 40 40 H 1.08995 * 109.47352 * 305.78199 * 14 12 11 41 41 H 1.08996 * 109.47447 * 65.78684 * 14 12 11 42 42 H 0.97002 * 119.99541 * 179.97438 * 18 17 15 43 43 H 1.07999 * 120.00112 * 0.28138 * 24 23 12 44 44 H 1.08001 * 120.00272 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00590 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.99954 * 179.97438 * 27 26 25 47 47 H 1.08003 * 119.99636 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8792 -1.0361 5 6 1.9992 -0.2247 -1.3629 6 1 1.3022 0.0433 -2.1569 7 6 2.6263 -1.6062 -1.5605 8 7 1.5672 -2.6011 -1.7471 9 6 1.8856 -3.8964 -1.9397 10 8 3.0521 -4.2392 -1.9591 11 7 0.9113 -4.8116 -2.1118 12 6 1.2576 -6.1996 -2.4274 13 1 2.1788 -6.2209 -3.0096 14 6 1.4567 -6.9834 -1.1287 15 6 1.9504 -8.3706 -1.4498 16 1 2.1842 -8.6380 -2.4697 17 6 2.1036 -9.2985 -0.4415 18 7 1.8184 -8.9731 0.8004 19 14 2.7161 -11.0178 -0.8395 20 1 4.0642 -10.9324 -1.4564 21 1 2.7924 -11.8175 0.4094 22 1 1.7781 -11.6702 -1.7879 23 6 0.1438 -6.8259 -3.2265 24 6 -1.1735 -6.5630 -2.9000 25 6 -2.1950 -7.1429 -3.6287 26 6 -1.8994 -7.9847 -4.6845 27 6 -0.5821 -8.2472 -5.0112 28 6 0.4395 -7.6683 -4.2819 29 1 -0.3633 -0.9617 -0.3622 30 1 -0.3633 0.1671 1.0140 31 1 -0.3634 0.7946 -0.6517 32 1 2.4460 1.6802 0.9482 33 1 1.3022 2.1211 -0.3935 34 1 3.9451 0.5051 -0.5953 35 1 3.1933 1.5747 -1.8575 36 1 3.2178 -1.8657 -0.6825 37 1 3.2694 -1.5909 -2.4404 38 1 0.6366 -2.3275 -1.7320 39 1 -0.0192 -4.5511 -2.0268 40 1 2.1897 -6.4724 -0.5046 41 1 0.5085 -7.0497 -0.5952 42 1 1.9258 -9.6260 1.5097 43 1 -1.4045 -5.9052 -2.0752 44 1 -3.2242 -6.9379 -3.3734 45 1 -2.6976 -8.4375 -5.2541 46 1 -0.3511 -8.9053 -5.8358 47 1 1.4687 -7.8737 -4.5369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921582349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:47 Heat of formation + Delta-G solvation = 2.690822 kcal Electronic energy + Delta-G solvation = -26359.866152 eV Core-core repulsion = 22735.355866 eV Total energy + Delta-G solvation = -3624.510286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42968 -40.77179 -39.87051 -36.82598 -35.54968 -34.82960 -32.62697 -31.69855 -31.52893 -30.37165 -29.14838 -26.56696 -25.03530 -24.32386 -23.88630 -23.44346 -22.11330 -21.26151 -20.67228 -19.46013 -18.66225 -17.70461 -17.20880 -17.01710 -16.66580 -16.27538 -16.21661 -15.89739 -15.86953 -15.53262 -14.99770 -14.92496 -14.56649 -14.24615 -14.14038 -14.04558 -13.99548 -13.80753 -13.12878 -13.06751 -12.89402 -12.66650 -12.51763 -12.39909 -12.34614 -11.94825 -11.88490 -11.83189 -11.69886 -11.63011 -11.43324 -11.15040 -10.55229 -10.31387 -9.76813 -9.74173 -9.68787 -9.42345 -8.18019 -6.27040 0.56575 0.62519 1.37727 1.42051 1.48749 1.74903 2.20951 2.42010 2.88391 3.00852 3.16415 3.34857 3.59321 3.81615 3.89676 4.06029 4.08972 4.16921 4.26109 4.34063 4.36286 4.42638 4.50561 4.53754 4.65284 4.74350 4.80430 4.82526 4.85734 4.88178 4.98445 4.99059 5.16508 5.24124 5.25114 5.33859 5.41261 5.47648 5.51895 5.56660 5.66100 5.70421 5.76608 5.91363 6.04407 6.12198 6.24223 6.24683 6.85094 7.13240 7.39930 7.64284 8.94385 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.003348 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.667477 B = 8362.022167 C = 9728.401007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.509 5.509 3 C 0.005 3.995 4 C -0.130 4.130 5 C 0.024 3.976 6 H 0.105 0.895 7 C 0.159 3.841 8 N -0.728 5.728 9 C 0.697 3.303 10 O -0.638 6.638 11 N -0.727 5.727 12 C 0.217 3.783 13 H 0.059 0.941 14 C 0.039 3.961 15 C -0.524 4.524 16 H 0.063 0.937 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.262 1.262 23 C -0.072 4.072 24 C -0.128 4.128 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.122 4.122 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.406 0.594 39 H 0.404 0.596 40 H -0.025 1.025 41 H 0.001 0.999 42 H 0.262 0.738 43 H 0.123 0.877 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.142 0.858 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 19.048 -9.409 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.232 5.232 3 C -0.123 4.123 4 C -0.169 4.169 5 C -0.086 4.086 6 H 0.123 0.877 7 C 0.034 3.966 8 N -0.385 5.385 9 C 0.396 3.604 10 O -0.519 6.519 11 N -0.383 5.383 12 C 0.112 3.888 13 H 0.077 0.923 14 C 0.001 3.999 15 C -0.562 4.562 16 H 0.081 0.919 17 C -0.195 4.195 18 N -0.574 5.574 19 Si 0.784 3.216 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.187 1.187 23 C -0.072 4.072 24 C -0.146 4.146 25 C -0.137 4.137 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.141 4.141 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.242 0.758 39 H 0.240 0.760 40 H -0.007 1.007 41 H 0.019 0.981 42 H 0.070 0.930 43 H 0.141 0.859 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.160 0.840 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.896 18.244 -8.731 21.712 hybrid contribution -0.414 -0.405 0.115 0.591 sum -8.310 17.839 -8.616 21.483 Atomic orbital electron populations 1.22904 0.88840 1.01768 1.02565 1.68542 1.10230 1.20180 1.24238 1.23944 0.97353 0.90465 1.00584 1.23312 0.97604 0.96360 0.99589 1.23728 0.98653 0.93720 0.92499 0.87746 1.21127 0.89255 0.85573 1.00599 1.44882 1.10803 1.04697 1.78081 1.16195 0.84726 0.81728 0.77706 1.90898 1.19900 1.80800 1.60281 1.45143 1.08617 1.08559 1.75931 1.19569 0.95045 0.78587 0.95641 0.92262 1.19178 0.94791 0.94102 0.91828 1.21410 1.43621 0.96999 0.94199 0.91883 1.25895 0.95724 1.03152 0.94775 1.70112 1.50228 1.36407 1.00687 0.85579 0.79207 0.79126 0.77683 1.19549 1.20873 1.18676 1.19787 0.94248 0.98081 0.95120 1.21017 0.91970 1.01571 1.00077 1.21384 0.99592 0.97132 0.95590 1.21456 0.96684 0.98553 0.97971 1.21367 0.92933 0.99667 1.00135 1.21083 0.99870 0.97512 0.95620 0.91804 0.91245 0.92843 0.89239 0.89274 0.89561 0.88342 0.93619 0.91374 0.75847 0.75951 1.00697 0.98060 0.92979 0.85899 0.83359 0.83191 0.84043 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.65 127.69 1.23 1.05 16 2 N -0.51 -9.39 6.36 -909.95 -5.79 -15.17 16 3 C 0.00 0.06 7.96 86.41 0.69 0.75 16 4 C -0.13 -1.73 7.85 31.24 0.25 -1.48 16 5 C 0.02 0.40 3.35 45.02 0.15 0.55 16 6 H 0.10 1.33 7.93 -2.39 -0.02 1.32 16 7 C 0.16 4.06 5.71 86.38 0.49 4.55 16 8 N -0.73 -20.43 5.56 -478.53 -2.66 -23.09 16 9 C 0.70 27.51 8.55 179.06 1.53 29.04 16 10 O -0.64 -32.18 16.00 -4.02 -0.06 -32.24 16 11 N -0.73 -27.20 5.01 -461.41 -2.31 -29.51 16 12 C 0.22 9.78 2.21 44.24 0.10 9.88 16 13 H 0.06 2.97 7.40 -2.39 -0.02 2.96 16 14 C 0.04 2.21 4.74 29.85 0.14 2.35 16 15 C -0.52 -30.99 8.53 25.60 0.22 -30.77 16 16 H 0.06 3.57 6.79 -2.91 -0.02 3.55 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -59.33 13.29 21.45 0.28 -59.04 16 19 Si 0.96 46.26 29.54 68.60 2.03 48.29 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 22 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 23 C -0.07 -2.77 4.50 -19.86 -0.09 -2.85 16 24 C -0.13 -4.15 9.08 22.27 0.20 -3.95 16 25 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 26 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 27 C -0.12 -3.59 10.05 22.27 0.22 -3.36 16 28 C -0.12 -4.45 8.83 22.27 0.20 -4.25 16 29 H 0.06 0.97 7.30 -2.39 -0.02 0.96 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.57 7.62 -2.39 -0.02 0.55 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 0.80 7.62 -2.39 -0.02 0.78 16 34 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.41 8.55 7.65 -92.71 -0.71 7.84 16 39 H 0.40 11.95 6.91 -92.71 -0.64 11.30 16 40 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 41 H 0.00 0.06 8.13 -2.39 -0.02 0.04 16 42 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.12 3.61 6.88 -2.91 -0.02 3.59 16 44 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 45 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 46 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 47 H 0.11 4.11 7.85 -2.91 -0.02 4.09 16 Total: -1.00 -81.37 385.15 -2.65 -84.02 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.38 Total: 30.68 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 6.24 Total: -3.92 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -10.47 Total: -126.82 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.06 Total: -32.24 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -81.37 -2.65 -84.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921582349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.708 kcal (2) G-P(sol) polarization free energy of solvation -81.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds