Wall clock time and date at job start Tue Mar 31 2020 11:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 119.99463 * 2 1 4 4 O 1.21581 * 119.99882 * 179.97438 * 3 2 1 5 5 N 1.34782 * 120.00456 * 359.97438 * 3 2 1 6 6 C 1.39234 * 120.00286 * 184.46592 * 5 3 2 7 7 C 1.39487 * 119.83843 * 145.26800 * 6 5 3 8 8 C 1.36370 * 120.16786 * 180.27703 * 7 6 5 9 9 C 1.40864 * 119.83047 * 359.45440 * 8 7 6 10 10 C 1.41161 * 120.16260 * 180.25443 * 9 8 7 11 11 H 1.07999 * 119.99598 * 151.77612 * 10 9 8 12 12 C 1.39894 * 119.99714 * 331.77202 * 10 9 8 13 13 N 1.30883 * 119.99637 * 162.20564 * 12 10 9 14 14 Si 1.86794 * 120.00350 * 342.20893 * 12 10 9 15 15 H 1.48499 * 109.47228 * 93.65852 * 14 12 10 16 16 H 1.48499 * 109.47110 * 213.65852 * 14 12 10 17 17 H 1.48500 * 109.47026 * 333.66041 * 14 12 10 18 18 C 1.40866 * 119.67316 * 0.27175 * 9 8 7 19 19 C 1.36374 * 119.82871 * 0.02562 * 18 9 8 20 20 C 1.46493 * 120.00447 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.50514 * 179.97438 * 20 2 1 22 22 C 1.53124 * 109.50315 * 300.08450 * 20 2 1 23 23 C 1.53130 * 109.15674 * 177.55402 * 22 20 2 24 24 C 1.53035 * 109.30975 * 302.40345 * 23 22 20 25 25 N 1.46846 * 109.52409 * 59.15982 * 24 23 22 26 26 C 1.46905 * 110.99903 * 174.16093 * 25 24 23 27 27 C 1.46851 * 111.19784 * 298.25379 * 25 24 23 28 28 H 1.09004 * 109.46952 * 90.00456 * 1 2 3 29 29 H 1.09006 * 109.47012 * 209.99498 * 1 2 3 30 30 H 1.08995 * 109.47833 * 330.00180 * 1 2 3 31 31 H 0.96997 * 119.99487 * 4.45894 * 5 3 2 32 32 H 1.07997 * 119.90947 * 0.02562 * 7 6 5 33 33 H 1.08004 * 120.07711 * 179.72589 * 8 7 6 34 34 H 0.97006 * 120.00052 * 180.02562 * 13 12 10 35 35 H 1.08005 * 120.08445 * 180.02562 * 18 9 8 36 36 H 1.08000 * 119.91697 * 179.97438 * 19 18 9 37 37 H 1.09001 * 109.51923 * 297.49476 * 22 20 2 38 38 H 1.08994 * 109.52659 * 57.69050 * 22 20 2 39 39 H 1.08992 * 109.50112 * 182.44002 * 23 22 20 40 40 H 1.09004 * 109.49996 * 62.36046 * 23 22 20 41 41 H 1.09005 * 109.46180 * 299.14436 * 24 23 22 42 42 H 1.09004 * 109.45367 * 179.16840 * 24 23 22 43 43 H 1.09001 * 109.46946 * 184.20781 * 26 25 24 44 44 H 1.08998 * 109.47053 * 304.21147 * 26 25 24 45 45 H 1.09000 * 109.47021 * 64.20532 * 26 25 24 46 46 H 1.09000 * 109.46167 * 301.72767 * 27 25 24 47 47 H 1.08998 * 109.44992 * 181.75191 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3546 1.1673 0.0005 5 7 1.4649 2.3345 -0.0005 6 6 2.1578 3.5385 -0.0944 7 6 1.5971 4.6095 -0.7902 8 6 2.2724 5.7900 -0.8912 9 6 3.5342 5.9298 -0.2808 10 6 4.2370 7.1503 -0.3763 11 1 4.9261 7.4390 0.4035 12 6 4.0409 7.9857 -1.4812 13 7 4.3999 9.2429 -1.4228 14 14 3.2665 7.3069 -3.0396 15 1 1.8013 7.5469 -3.0095 16 1 3.8551 7.9866 -4.2215 17 1 3.5273 5.8476 -3.1269 18 6 4.0915 4.8456 0.4251 19 6 3.4070 3.6693 0.5123 20 6 2.1976 -1.2686 0.0006 21 1 3.2693 -1.0700 0.0000 22 6 1.8267 -2.0726 1.2499 23 6 2.5494 -3.4221 1.2119 24 6 2.1686 -4.1641 -0.0712 25 7 2.5451 -3.3540 -1.2367 26 6 2.3213 -4.0935 -2.4862 27 6 1.8269 -2.0731 -1.2475 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 0.4971 2.3357 0.0644 32 1 0.6275 4.5022 -1.2536 33 1 1.8389 6.6169 -1.4340 34 1 4.2636 9.8224 -2.1888 35 1 5.0583 4.9456 0.8960 36 1 3.8330 2.8369 1.0528 37 1 2.1290 -1.5217 2.1405 38 1 0.7495 -2.2374 1.2705 39 1 2.2557 -4.0165 2.0769 40 1 3.6269 -3.2585 1.2316 41 1 1.0929 -4.3401 -0.0834 42 1 2.6933 -5.1188 -0.1078 43 1 2.6775 -3.5001 -3.3283 44 1 2.8642 -5.0379 -2.4517 45 1 1.2560 -4.2910 -2.6057 46 1 0.7529 -2.2590 -1.2541 47 1 2.1036 -1.5094 -2.1384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929428165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:25 Heat of formation + Delta-G solvation = 9.646846 kcal Electronic energy + Delta-G solvation = -26632.162925 eV Core-core repulsion = 23007.954274 eV Total energy + Delta-G solvation = -3624.208650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.52057 -39.08384 -37.61029 -35.52706 -34.51869 -33.35681 -32.86370 -30.44863 -29.82364 -29.15197 -27.05307 -26.95070 -24.85524 -23.21942 -22.95575 -21.86544 -20.68881 -20.01775 -19.32112 -18.07700 -17.39972 -16.84629 -16.17057 -15.69783 -15.45456 -15.16866 -15.01896 -14.76648 -14.12382 -13.86773 -13.77295 -13.61490 -13.46524 -13.13915 -12.88080 -12.69557 -12.60664 -12.55597 -12.45729 -12.22862 -12.00927 -11.79186 -11.55943 -11.14696 -11.06125 -10.81695 -10.75563 -10.73622 -10.37513 -10.09877 -9.62642 -9.55115 -9.42449 -8.79162 -8.72157 -8.56032 -7.74175 -7.10262 -6.92120 -4.37608 2.49102 2.72600 2.80924 3.11505 3.24164 3.36043 3.55999 3.70754 4.01963 4.21070 4.53526 4.57792 4.60754 4.65887 4.78857 4.88137 5.03629 5.10743 5.16402 5.20540 5.29400 5.34800 5.37768 5.46896 5.49740 5.56572 5.58643 5.68116 5.82438 5.97530 5.99784 6.06374 6.19719 6.40579 6.54112 6.68363 6.74075 6.81564 6.86390 6.91347 7.03609 7.28624 7.44008 7.65068 7.74555 7.90856 8.19588 8.32529 8.38670 8.69130 8.83957 8.99619 10.10276 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025653 B = 0.002722 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.220198 B =10284.773264 C =10519.921640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.633 5.633 3 C 0.699 3.301 4 O -0.573 6.573 5 N -0.667 5.667 6 C 0.010 3.990 7 C -0.090 4.090 8 C -0.232 4.232 9 C 0.087 3.913 10 C -0.442 4.442 11 H 0.091 0.909 12 C 0.082 3.918 13 N -0.809 5.809 14 Si 0.914 3.086 15 H -0.271 1.271 16 H -0.293 1.293 17 H -0.244 1.244 18 C -0.199 4.199 19 C -0.068 4.068 20 C 0.162 3.838 21 H 0.113 0.887 22 C -0.130 4.130 23 C -0.115 4.115 24 C 0.054 3.946 25 N -0.540 5.540 26 C 0.027 3.973 27 C 0.051 3.949 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.392 0.608 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.285 0.715 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.023 0.977 46 H 0.034 0.966 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.384 -23.644 0.859 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.371 5.371 3 C 0.401 3.599 4 O -0.449 6.449 5 N -0.314 5.314 6 C -0.083 4.083 7 C -0.111 4.111 8 C -0.251 4.251 9 C 0.084 3.916 10 C -0.471 4.471 11 H 0.109 0.891 12 C -0.136 4.136 13 N -0.434 5.434 14 Si 0.742 3.258 15 H -0.198 1.198 16 H -0.221 1.221 17 H -0.167 1.167 18 C -0.219 4.219 19 C -0.088 4.088 20 C 0.057 3.943 21 H 0.131 0.869 22 C -0.169 4.169 23 C -0.153 4.153 24 C -0.074 4.074 25 N -0.265 5.265 26 C -0.121 4.121 27 C -0.079 4.079 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.227 0.773 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.927 -23.263 0.802 24.930 hybrid contribution -1.936 -0.251 -0.866 2.136 sum -10.863 -23.514 -0.064 25.902 Atomic orbital electron populations 1.21670 0.80694 1.02726 1.01478 1.47014 1.05858 1.04785 1.79435 1.15914 0.85469 0.80182 0.78330 1.90900 1.11376 1.85509 1.57152 1.42212 1.09097 1.03667 1.76410 1.16931 0.96864 0.84964 1.09558 1.20055 0.98851 0.93658 0.98512 1.20566 0.97015 0.97522 1.10029 1.17777 0.90810 0.92443 0.90598 1.19469 1.21776 0.99697 1.06113 0.89143 1.26183 0.92674 0.93690 1.01072 1.69723 1.36904 1.04859 1.31876 0.86295 0.78675 0.81625 0.79249 1.19777 1.22065 1.16705 1.20694 1.00110 0.92861 1.08276 1.20552 0.93719 0.97088 0.97395 1.20820 0.99056 0.81343 0.93088 0.86901 1.21971 1.00227 0.96134 0.98558 1.21550 1.01796 0.95447 0.96511 1.22143 0.98243 0.96523 0.90471 1.61798 1.57895 1.04169 1.02662 1.22347 0.99133 0.98766 0.91855 1.22411 0.95615 0.90440 0.99385 0.92939 0.91072 0.91458 0.77325 0.88816 0.87904 0.90505 0.87933 0.86762 0.91071 0.92096 0.91089 0.90549 0.95021 0.90585 0.91156 0.91222 0.95794 0.94825 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 9.28 59.85 0.56 1.24 16 2 N -0.63 -8.11 2.76 -179.57 -0.50 -8.61 16 3 C 0.70 12.28 8.12 -86.92 -0.71 11.57 16 4 O -0.57 -12.46 13.06 5.29 0.07 -12.39 16 5 N -0.67 -11.49 5.18 -14.10 -0.07 -11.56 16 6 C 0.01 0.21 6.31 -83.57 -0.53 -0.32 16 7 C -0.09 -1.96 9.90 -39.79 -0.39 -2.35 16 8 C -0.23 -5.64 7.11 -39.26 -0.28 -5.92 16 9 C 0.09 2.27 5.15 -106.80 -0.55 1.72 16 10 C -0.44 -12.20 9.57 -37.85 -0.36 -12.56 16 11 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 12 C 0.08 2.20 5.42 -17.34 -0.09 2.10 16 13 N -0.81 -21.84 13.93 55.55 0.77 -21.07 16 14 Si 0.91 21.31 24.46 -169.99 -4.16 17.15 16 15 H -0.27 -6.05 6.61 56.52 0.37 -5.68 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.24 -5.93 6.87 56.52 0.39 -5.54 16 18 C -0.20 -4.94 9.74 -39.26 -0.38 -5.32 16 19 C -0.07 -1.58 8.61 -39.79 -0.34 -1.92 16 20 C 0.16 1.92 2.69 -67.85 -0.18 1.74 16 21 H 0.11 1.72 6.90 -51.93 -0.36 1.36 16 22 C -0.13 -1.22 5.31 -26.60 -0.14 -1.36 16 23 C -0.11 -0.92 6.09 -26.65 -0.16 -1.08 16 24 C 0.05 0.42 5.46 -3.84 -0.02 0.40 16 25 N -0.54 -5.23 4.91 -242.95 -1.19 -6.42 16 26 C 0.03 0.21 9.59 60.07 0.58 0.79 16 27 C 0.05 0.53 4.76 -3.83 -0.02 0.51 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.49 6.39 -51.93 -0.33 0.16 16 30 H 0.07 0.54 6.30 -51.93 -0.33 0.21 16 31 H 0.39 5.29 6.51 -40.82 -0.27 5.02 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.10 2.48 4.42 -52.48 -0.23 2.25 16 34 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 35 H 0.10 2.42 8.06 -52.48 -0.42 2.00 16 36 H 0.11 2.66 6.19 -52.49 -0.32 2.34 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.49 6.58 -51.93 -0.34 0.15 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 45 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.03 0.31 7.64 -51.93 -0.40 -0.08 16 47 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -31.23 362.70 -9.89 -41.11 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.24 Total: 7.07 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.03 Total: -10.76 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.99 Total: -47.66 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.16 Total: 17.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.23 -9.89 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929428165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.759 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds