Wall clock time and date at job start Tue Mar 31 2020 11:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 119.99463 * 2 1 4 4 O 1.21581 * 119.99882 * 179.97438 * 3 2 1 5 5 N 1.34782 * 120.00456 * 359.97438 * 3 2 1 6 6 C 1.39234 * 120.00286 * 184.46592 * 5 3 2 7 7 C 1.39487 * 119.83843 * 145.26800 * 6 5 3 8 8 C 1.36370 * 120.16786 * 180.27703 * 7 6 5 9 9 C 1.40864 * 119.83047 * 359.45440 * 8 7 6 10 10 C 1.41161 * 120.16260 * 180.25443 * 9 8 7 11 11 H 1.07999 * 119.99598 * 151.77612 * 10 9 8 12 12 C 1.39894 * 119.99714 * 331.77202 * 10 9 8 13 13 N 1.30883 * 119.99637 * 162.20564 * 12 10 9 14 14 Si 1.86794 * 120.00350 * 342.20893 * 12 10 9 15 15 H 1.48499 * 109.47228 * 93.65852 * 14 12 10 16 16 H 1.48499 * 109.47110 * 213.65852 * 14 12 10 17 17 H 1.48500 * 109.47026 * 333.66041 * 14 12 10 18 18 C 1.40866 * 119.67316 * 0.27175 * 9 8 7 19 19 C 1.36374 * 119.82871 * 0.02562 * 18 9 8 20 20 C 1.46493 * 120.00447 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.50514 * 179.97438 * 20 2 1 22 22 C 1.53124 * 109.50315 * 300.08450 * 20 2 1 23 23 C 1.53130 * 109.15674 * 177.55402 * 22 20 2 24 24 C 1.53035 * 109.30975 * 302.40345 * 23 22 20 25 25 N 1.46846 * 109.52409 * 59.15982 * 24 23 22 26 26 C 1.46905 * 110.99903 * 174.16093 * 25 24 23 27 27 C 1.46851 * 111.19784 * 298.25379 * 25 24 23 28 28 H 1.09004 * 109.46952 * 90.00456 * 1 2 3 29 29 H 1.09006 * 109.47012 * 209.99498 * 1 2 3 30 30 H 1.08995 * 109.47833 * 330.00180 * 1 2 3 31 31 H 0.96997 * 119.99487 * 4.45894 * 5 3 2 32 32 H 1.07997 * 119.90947 * 0.02562 * 7 6 5 33 33 H 1.08004 * 120.07711 * 179.72589 * 8 7 6 34 34 H 0.97006 * 120.00052 * 180.02562 * 13 12 10 35 35 H 1.08005 * 120.08445 * 180.02562 * 18 9 8 36 36 H 1.08000 * 119.91697 * 179.97438 * 19 18 9 37 37 H 1.09001 * 109.51923 * 297.49476 * 22 20 2 38 38 H 1.08994 * 109.52659 * 57.69050 * 22 20 2 39 39 H 1.08992 * 109.50112 * 182.44002 * 23 22 20 40 40 H 1.09004 * 109.49996 * 62.36046 * 23 22 20 41 41 H 1.09005 * 109.46180 * 299.14436 * 24 23 22 42 42 H 1.09004 * 109.45367 * 179.16840 * 24 23 22 43 43 H 1.09001 * 109.46946 * 184.20781 * 26 25 24 44 44 H 1.08998 * 109.47053 * 304.21147 * 26 25 24 45 45 H 1.09000 * 109.47021 * 64.20532 * 26 25 24 46 46 H 1.09000 * 109.46167 * 301.72767 * 27 25 24 47 47 H 1.08998 * 109.44992 * 181.75191 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3546 1.1673 0.0005 5 7 1.4649 2.3345 -0.0005 6 6 2.1578 3.5385 -0.0944 7 6 1.5971 4.6095 -0.7902 8 6 2.2724 5.7900 -0.8912 9 6 3.5342 5.9298 -0.2808 10 6 4.2370 7.1503 -0.3763 11 1 4.9261 7.4390 0.4035 12 6 4.0409 7.9857 -1.4812 13 7 4.3999 9.2429 -1.4228 14 14 3.2665 7.3069 -3.0396 15 1 1.8013 7.5469 -3.0095 16 1 3.8551 7.9866 -4.2215 17 1 3.5273 5.8476 -3.1269 18 6 4.0915 4.8456 0.4251 19 6 3.4070 3.6693 0.5123 20 6 2.1976 -1.2686 0.0006 21 1 3.2693 -1.0700 0.0000 22 6 1.8267 -2.0726 1.2499 23 6 2.5494 -3.4221 1.2119 24 6 2.1686 -4.1641 -0.0712 25 7 2.5451 -3.3540 -1.2367 26 6 2.3213 -4.0935 -2.4862 27 6 1.8269 -2.0731 -1.2475 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 0.4971 2.3357 0.0644 32 1 0.6275 4.5022 -1.2536 33 1 1.8389 6.6169 -1.4340 34 1 4.2636 9.8224 -2.1888 35 1 5.0583 4.9456 0.8960 36 1 3.8330 2.8369 1.0528 37 1 2.1290 -1.5217 2.1405 38 1 0.7495 -2.2374 1.2705 39 1 2.2557 -4.0165 2.0769 40 1 3.6269 -3.2585 1.2316 41 1 1.0929 -4.3401 -0.0834 42 1 2.6933 -5.1188 -0.1078 43 1 2.6775 -3.5001 -3.3283 44 1 2.8642 -5.0379 -2.4517 45 1 1.2560 -4.2910 -2.6057 46 1 0.7529 -2.2590 -1.2541 47 1 2.1036 -1.5094 -2.1384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929428165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:24 Heat of formation + Delta-G solvation = -11.085261 kcal Electronic energy + Delta-G solvation = -26633.061936 eV Core-core repulsion = 23007.954274 eV Total energy + Delta-G solvation = -3625.107662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78728 -40.19002 -39.19550 -36.64820 -36.19295 -34.96638 -33.85895 -31.71385 -31.69952 -30.56385 -27.89541 -27.68164 -26.57655 -24.27811 -23.85579 -23.48847 -22.39153 -21.20515 -20.33338 -19.50482 -19.22845 -18.28691 -17.36310 -16.88165 -16.77317 -16.37518 -15.96044 -15.73974 -15.55660 -15.41792 -14.89816 -14.71321 -14.69791 -14.37082 -14.23856 -14.14557 -14.04919 -13.73600 -13.55773 -13.23370 -13.16627 -12.93325 -12.65353 -12.61206 -12.38239 -12.22679 -11.91887 -11.80496 -11.61383 -11.52155 -11.50590 -11.33578 -11.09877 -10.58115 -9.73050 -9.61139 -9.28803 -8.90372 -8.89748 -6.41390 0.67170 0.88725 1.25355 1.41073 1.50357 1.57491 2.09503 2.15085 2.64691 2.90496 3.12524 3.51842 3.76351 3.78526 3.99861 4.08566 4.20298 4.25264 4.27866 4.33814 4.49211 4.52761 4.54027 4.56942 4.67662 4.68081 4.72735 4.84103 4.86427 4.93174 4.94272 4.98798 5.01156 5.07068 5.12515 5.23589 5.33569 5.39134 5.42475 5.56695 5.70159 5.84987 5.95949 6.00358 6.06754 6.14962 6.26194 6.39426 6.74373 6.82329 6.98796 7.59873 8.18856 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025653 B = 0.002722 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.220198 B =10284.773264 C =10519.921640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.621 5.621 3 C 0.694 3.306 4 O -0.622 6.622 5 N -0.658 5.658 6 C 0.036 3.964 7 C -0.088 4.088 8 C -0.236 4.236 9 C 0.067 3.933 10 C -0.481 4.481 11 H 0.054 0.946 12 C 0.046 3.954 13 N -0.848 5.848 14 Si 0.969 3.031 15 H -0.247 1.247 16 H -0.279 1.279 17 H -0.261 1.261 18 C -0.213 4.213 19 C -0.079 4.079 20 C 0.159 3.841 21 H 0.070 0.930 22 C -0.122 4.122 23 C -0.113 4.113 24 C 0.055 3.945 25 N -0.563 5.563 26 C 0.028 3.972 27 C 0.061 3.939 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.414 0.586 32 H 0.140 0.860 33 H 0.109 0.891 34 H 0.294 0.706 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.054 0.946 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.328 -26.862 -0.079 30.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.358 5.358 3 C 0.396 3.604 4 O -0.502 6.502 5 N -0.308 5.308 6 C -0.059 4.059 7 C -0.108 4.108 8 C -0.256 4.256 9 C 0.064 3.936 10 C -0.511 4.511 11 H 0.073 0.927 12 C -0.168 4.168 13 N -0.475 5.475 14 Si 0.792 3.208 15 H -0.172 1.172 16 H -0.206 1.206 17 H -0.185 1.185 18 C -0.233 4.233 19 C -0.099 4.099 20 C 0.054 3.946 21 H 0.088 0.912 22 C -0.161 4.161 23 C -0.151 4.151 24 C -0.072 4.072 25 N -0.288 5.288 26 C -0.120 4.120 27 C -0.068 4.068 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.254 0.746 32 H 0.158 0.842 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.943 -26.527 -0.123 29.516 hybrid contribution -0.744 0.463 -0.457 0.988 sum -13.687 -26.064 -0.580 29.445 Atomic orbital electron populations 1.22024 0.77484 1.04707 1.03139 1.47032 1.07737 1.03396 1.77636 1.16132 0.85016 0.81287 0.77995 1.90880 1.13841 1.86376 1.59120 1.42005 1.10075 1.02283 1.76387 1.17052 0.95799 0.86389 1.06637 1.20411 1.00377 0.92277 0.97753 1.20735 0.96302 0.98855 1.09671 1.17886 0.91866 0.92083 0.91795 1.19427 1.23220 1.01644 1.06762 0.92738 1.26847 0.93130 0.93706 1.03131 1.69743 1.38753 1.05772 1.33211 0.85472 0.79346 0.79781 0.76180 1.17195 1.20572 1.18472 1.20789 1.00405 0.93485 1.08654 1.20637 0.94933 0.96273 0.98040 1.20871 0.96795 0.81388 0.95503 0.91179 1.21912 1.01737 0.96090 0.96311 1.21561 1.00539 0.95105 0.97886 1.22191 0.99245 0.96490 0.89268 1.61776 1.58534 1.04406 1.04098 1.22363 1.00023 0.98831 0.90749 1.22218 0.96702 0.90551 0.97341 0.91358 0.88416 0.90281 0.74636 0.84225 0.87359 0.89512 0.88536 0.87069 0.92405 0.89688 0.88772 0.92441 0.93559 0.89427 0.91973 0.90066 0.94630 0.92773 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 9.28 127.77 1.19 2.07 16 2 N -0.62 -14.48 2.76 -840.31 -2.32 -16.80 16 3 C 0.69 23.40 8.12 179.05 1.45 24.85 16 4 O -0.62 -27.39 13.06 -3.97 -0.05 -27.44 16 5 N -0.66 -20.82 5.18 -316.78 -1.64 -22.47 16 6 C 0.04 1.46 6.31 38.57 0.24 1.70 16 7 C -0.09 -3.54 9.90 22.13 0.22 -3.33 16 8 C -0.24 -11.22 7.11 22.48 0.16 -11.06 16 9 C 0.07 3.57 5.15 -21.28 -0.11 3.46 16 10 C -0.48 -28.04 9.57 23.39 0.22 -27.82 16 11 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 12 C 0.05 2.54 5.42 85.24 0.46 3.00 16 13 N -0.85 -47.37 13.93 21.82 0.30 -47.06 16 14 Si 0.97 43.67 24.46 68.60 1.68 45.35 16 15 H -0.25 -10.10 6.61 99.48 0.66 -9.44 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 17 H -0.26 -12.35 6.87 99.48 0.68 -11.67 16 18 C -0.21 -10.97 9.74 22.48 0.22 -10.75 16 19 C -0.08 -3.71 8.61 22.14 0.19 -3.51 16 20 C 0.16 3.58 2.69 45.05 0.12 3.70 16 21 H 0.07 2.21 6.90 -2.39 -0.02 2.20 16 22 C -0.12 -1.98 5.31 30.68 0.16 -1.82 16 23 C -0.11 -1.55 6.09 30.65 0.19 -1.36 16 24 C 0.06 0.70 5.46 86.33 0.47 1.17 16 25 N -0.56 -9.78 4.91 -922.55 -4.53 -14.31 16 26 C 0.03 0.37 9.59 127.69 1.22 1.60 16 27 C 0.06 1.15 4.76 86.33 0.41 1.56 16 28 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.10 0.81 6.39 -2.38 -0.02 0.79 16 30 H 0.08 0.87 6.30 -2.39 -0.02 0.85 16 31 H 0.41 9.38 6.51 -92.71 -0.60 8.77 16 32 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 33 H 0.11 5.00 4.42 -2.91 -0.01 4.99 16 34 H 0.29 14.68 8.30 -92.70 -0.77 13.91 16 35 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 36 H 0.11 5.31 6.19 -2.91 -0.02 5.30 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 0.99 6.58 -2.39 -0.02 0.97 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 45 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.05 0.80 7.64 -2.39 -0.02 0.78 16 47 H 0.06 1.31 8.12 -2.39 -0.02 1.29 16 Total: -1.00 -72.41 362.70 0.56 -71.85 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.30 Total: 27.42 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 6.82 Total: -16.54 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -8.19 Total: -100.64 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.68 Total: 45.35 kcal Total: -72.41 0.56 -71.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929428165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.769 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds