Wall clock time and date at job start Tue Mar 31 2020 11:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99707 * 2 1 4 4 O 1.21580 * 119.99528 * 180.02562 * 3 2 1 5 5 N 1.34777 * 120.00113 * 0.02562 * 3 2 1 6 6 C 1.39248 * 119.99771 * 175.70636 * 5 3 2 7 7 C 1.39473 * 119.82729 * 215.08703 * 6 5 3 8 8 C 1.36381 * 120.16429 * 179.75801 * 7 6 5 9 9 C 1.40870 * 119.82762 * 0.50030 * 8 7 6 10 10 C 1.41159 * 120.16185 * 179.78437 * 9 8 7 11 11 H 1.08002 * 119.99465 * 214.70935 * 10 9 8 12 12 C 1.39884 * 120.00513 * 34.70806 * 10 9 8 13 13 N 1.30890 * 119.99903 * 355.69071 * 12 10 9 14 14 Si 1.86798 * 120.00372 * 175.69330 * 12 10 9 15 15 H 1.48503 * 109.47069 * 59.99862 * 14 12 10 16 16 H 1.48502 * 109.47407 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46858 * 299.99605 * 14 12 10 18 18 C 1.40867 * 119.67185 * 359.75505 * 9 8 7 19 19 C 1.36372 * 119.82865 * 0.02562 * 18 9 8 20 20 C 1.46502 * 120.00137 * 180.02562 * 2 1 3 21 21 H 1.08995 * 109.50393 * 180.02562 * 20 2 1 22 22 C 1.53123 * 109.50472 * 59.99444 * 20 2 1 23 23 C 1.53110 * 109.16217 * 182.40268 * 22 20 2 24 24 C 1.53044 * 109.27593 * 57.65830 * 23 22 20 25 25 N 1.46842 * 109.52341 * 300.82063 * 24 23 22 26 26 C 1.46901 * 111.00173 * 185.84126 * 25 24 23 27 27 C 1.46840 * 111.20165 * 61.74099 * 25 24 23 28 28 H 1.09001 * 109.47327 * 90.00244 * 1 2 3 29 29 H 1.08993 * 109.47587 * 329.99521 * 1 2 3 30 30 H 1.09004 * 109.46757 * 209.99387 * 1 2 3 31 31 H 0.96991 * 120.00001 * 355.70153 * 5 3 2 32 32 H 1.07999 * 119.92389 * 0.02562 * 7 6 5 33 33 H 1.08001 * 120.08846 * 180.22962 * 8 7 6 34 34 H 0.96998 * 119.99831 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.08372 * 180.02562 * 18 9 8 36 36 H 1.08002 * 119.91424 * 180.02562 * 19 18 9 37 37 H 1.09000 * 109.52663 * 302.31391 * 22 20 2 38 38 H 1.08999 * 109.51695 * 62.43881 * 22 20 2 39 39 H 1.08996 * 109.50916 * 177.59856 * 23 22 20 40 40 H 1.09000 * 109.51130 * 297.68427 * 23 22 20 41 41 H 1.08995 * 109.45984 * 60.84021 * 24 23 22 42 42 H 1.09005 * 109.45992 * 180.80491 * 24 23 22 43 43 H 1.09004 * 109.47113 * 56.04031 * 26 25 24 44 44 H 1.08996 * 109.47231 * 176.04663 * 26 25 24 45 45 H 1.08998 * 109.46892 * 296.04624 * 26 25 24 46 46 H 1.08995 * 109.47039 * 178.24351 * 27 25 24 47 47 H 1.09007 * 109.46118 * 58.27254 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3546 1.1672 -0.0005 5 7 1.4649 2.3344 0.0005 6 6 2.1583 3.5386 0.0908 7 6 1.6026 4.6081 0.7927 8 6 2.2779 5.7890 0.8897 9 6 3.5349 5.9303 0.2697 10 6 4.2379 7.1509 0.3617 11 1 4.8394 7.4914 -0.4682 12 6 4.1556 7.9194 1.5276 13 7 3.3612 7.5501 2.5002 14 14 5.1792 9.4728 1.6967 15 1 4.8188 10.4234 0.6143 16 1 4.9128 10.1000 3.0161 17 1 6.6204 9.1294 1.5945 18 6 4.0871 4.8473 -0.4420 19 6 3.4020 3.6711 -0.5264 20 6 2.1976 -1.2687 -0.0006 21 1 3.2693 -1.0701 0.0000 22 6 1.8281 -2.0718 -1.2508 23 6 2.5514 -3.4208 -1.2136 24 6 2.1683 -4.1642 0.0681 25 7 2.5426 -3.3554 1.2352 26 6 2.3167 -4.0961 2.4835 27 6 1.8247 -2.0746 1.2460 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 0.8899 0.5139 30 1 -0.3633 -0.8901 0.5138 31 1 0.4970 2.3356 -0.0621 32 1 0.6371 4.4995 1.2644 33 1 1.8481 6.6152 1.4367 34 1 3.3039 8.0832 3.3085 35 1 5.0505 4.9481 -0.9195 36 1 3.8242 2.8398 -1.0714 37 1 0.7508 -2.2365 -1.2729 38 1 2.1305 -1.5198 -2.1407 39 1 2.2593 -4.0145 -2.0797 40 1 3.6288 -3.2568 -1.2314 41 1 1.0927 -4.3402 0.0781 42 1 2.6927 -5.1191 0.1047 43 1 2.8633 -5.0386 2.4508 44 1 2.6672 -3.5018 3.3272 45 1 1.2517 -4.2977 2.5986 46 1 2.0995 -1.5116 2.1379 47 1 0.7506 -2.2603 1.2505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929428167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:30 Heat of formation + Delta-G solvation = 8.170551 kcal Electronic energy + Delta-G solvation = -26507.715708 eV Core-core repulsion = 22883.443041 eV Total energy + Delta-G solvation = -3624.272667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42650 -38.99026 -37.36446 -35.42699 -34.43136 -33.28567 -32.66619 -30.25936 -29.46681 -28.58320 -27.04509 -26.83033 -24.92908 -23.17398 -22.95425 -21.40061 -20.73599 -19.84468 -19.15758 -17.92726 -17.22754 -16.68664 -15.93539 -15.64228 -15.32168 -15.08242 -15.01687 -14.67217 -14.07063 -13.83055 -13.64268 -13.50169 -13.38577 -12.92326 -12.78694 -12.61403 -12.54789 -12.43400 -12.03463 -11.96381 -11.64513 -11.51315 -11.28037 -11.12427 -11.06169 -10.97782 -10.75402 -10.71982 -10.65138 -10.01824 -9.47050 -9.40443 -9.16739 -8.82307 -8.67892 -8.47188 -7.47777 -6.77302 -6.55487 -4.27683 2.68674 2.84343 3.12357 3.14183 3.16346 3.21198 3.68398 3.76870 4.02819 4.32446 4.60241 4.65431 4.70726 4.76647 4.84018 4.94662 5.09462 5.14377 5.19829 5.30014 5.32195 5.40556 5.44642 5.54012 5.60664 5.63151 5.70585 5.72917 5.87679 6.05385 6.12491 6.24482 6.48812 6.51774 6.77606 6.78427 6.83047 6.97772 7.10475 7.19876 7.31903 7.43262 7.71449 7.91598 8.01066 8.14862 8.37141 8.47826 8.69923 8.98115 8.99392 9.14214 10.35792 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027582 B = 0.002468 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.920800 B =11342.838345 C =11443.939121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.633 5.633 3 C 0.698 3.302 4 O -0.573 6.573 5 N -0.666 5.666 6 C 0.023 3.977 7 C -0.124 4.124 8 C -0.140 4.140 9 C 0.098 3.902 10 C -0.462 4.462 11 H 0.074 0.926 12 C 0.069 3.931 13 N -0.814 5.814 14 Si 0.915 3.085 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.267 1.267 18 C -0.203 4.203 19 C -0.086 4.086 20 C 0.162 3.838 21 H 0.113 0.887 22 C -0.129 4.129 23 C -0.115 4.115 24 C 0.054 3.946 25 N -0.540 5.540 26 C 0.027 3.973 27 C 0.049 3.951 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.391 0.609 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.277 0.723 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.031 0.969 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.023 0.977 46 H 0.079 0.921 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 -19.700 -2.687 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.372 5.372 3 C 0.400 3.600 4 O -0.450 6.450 5 N -0.313 5.313 6 C -0.069 4.069 7 C -0.144 4.144 8 C -0.160 4.160 9 C 0.095 3.905 10 C -0.493 4.493 11 H 0.093 0.907 12 C -0.145 4.145 13 N -0.442 5.442 14 Si 0.740 3.260 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.224 4.224 19 C -0.106 4.106 20 C 0.057 3.943 21 H 0.131 0.869 22 C -0.168 4.168 23 C -0.153 4.153 24 C -0.074 4.074 25 N -0.265 5.265 26 C -0.121 4.121 27 C -0.080 4.080 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.226 0.774 32 H 0.107 0.893 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.208 -19.513 -2.461 20.947 hybrid contribution -1.095 0.422 0.402 1.241 sum -8.303 -19.091 -2.059 20.920 Atomic orbital electron populations 1.21665 0.80744 1.02736 1.01449 1.47021 1.05824 1.04785 1.79534 1.15943 0.85491 0.80206 0.78342 1.90901 1.11403 1.85503 1.57144 1.42269 1.09021 1.03752 1.76284 1.17092 0.96836 0.84821 1.08172 1.20278 0.99512 0.94465 1.00172 1.21167 0.94770 0.96786 1.03322 1.17706 0.90632 0.92192 0.89948 1.19441 1.25852 1.03560 1.00461 0.90733 1.25859 0.94869 0.98372 0.95415 1.69764 1.31782 1.37020 1.05630 0.86264 0.80750 0.81000 0.77977 1.19114 1.20506 1.19142 1.20809 0.99790 0.93311 1.08443 1.20423 0.94291 0.97078 0.98835 1.20802 0.99054 0.81393 0.93031 0.86945 1.21955 1.00200 0.96044 0.98568 1.21551 1.01775 0.95505 0.96488 1.22140 0.98234 0.96510 0.90473 1.61786 1.57916 1.04156 1.02634 1.22347 0.99108 0.98744 0.91900 1.22423 0.95597 0.90465 0.99471 0.92873 0.91390 0.91271 0.77413 0.89268 0.85070 0.91204 0.88648 0.87352 0.92173 0.91152 0.91133 0.90577 0.95031 0.90617 0.91240 0.91140 0.95808 0.90261 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 9.18 59.85 0.55 1.29 16 2 N -0.63 -8.65 2.77 -179.58 -0.50 -9.14 16 3 C 0.70 12.99 8.11 -86.92 -0.71 12.28 16 4 O -0.57 -13.11 13.09 5.29 0.07 -13.05 16 5 N -0.67 -12.24 5.15 -14.10 -0.07 -12.31 16 6 C 0.02 0.54 6.30 -83.57 -0.53 0.01 16 7 C -0.12 -2.88 9.90 -39.79 -0.39 -3.27 16 8 C -0.14 -3.67 8.61 -39.26 -0.34 -4.01 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 10 C -0.46 -12.56 9.02 -37.86 -0.34 -12.90 16 11 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 12 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 13 N -0.81 -21.57 10.60 55.54 0.59 -20.98 16 14 Si 0.91 19.37 29.56 -169.99 -5.03 14.34 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 C -0.20 -5.29 9.74 -39.26 -0.38 -5.67 16 19 C -0.09 -2.13 8.61 -39.79 -0.34 -2.47 16 20 C 0.16 2.04 2.69 -67.84 -0.18 1.86 16 21 H 0.11 1.80 6.90 -51.93 -0.36 1.44 16 22 C -0.13 -1.29 5.32 -26.61 -0.14 -1.43 16 23 C -0.11 -0.98 6.09 -26.65 -0.16 -1.14 16 24 C 0.05 0.45 5.46 -3.83 -0.02 0.43 16 25 N -0.54 -5.48 4.91 -242.96 -1.19 -6.67 16 26 C 0.03 0.22 9.59 60.07 0.58 0.80 16 27 C 0.05 0.54 4.74 -3.83 -0.02 0.53 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 30 H 0.07 0.54 6.40 -51.93 -0.33 0.20 16 31 H 0.39 5.72 6.61 -40.82 -0.27 5.45 16 32 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 34 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 35 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 36 H 0.11 2.68 6.22 -52.49 -0.33 2.35 16 37 H 0.06 0.53 7.60 -51.93 -0.39 0.14 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 43 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 46 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 47 H 0.03 0.33 6.62 -51.92 -0.34 -0.01 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -31.35 368.22 -10.99 -42.34 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.29 Total: 9.84 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -3.12 Total: -9.93 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -1.17 Total: -49.10 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.07 Total: -13.05 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.35 -10.99 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929428167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.509 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds