Wall clock time and date at job start Tue Mar 31 2020 11:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99707 * 2 1 4 4 O 1.21580 * 119.99528 * 180.02562 * 3 2 1 5 5 N 1.34777 * 120.00113 * 0.02562 * 3 2 1 6 6 C 1.39248 * 119.99771 * 175.70636 * 5 3 2 7 7 C 1.39473 * 119.82729 * 215.08703 * 6 5 3 8 8 C 1.36381 * 120.16429 * 179.75801 * 7 6 5 9 9 C 1.40870 * 119.82762 * 0.50030 * 8 7 6 10 10 C 1.41159 * 120.16185 * 179.78437 * 9 8 7 11 11 H 1.08002 * 119.99465 * 214.70935 * 10 9 8 12 12 C 1.39884 * 120.00513 * 34.70806 * 10 9 8 13 13 N 1.30890 * 119.99903 * 355.69071 * 12 10 9 14 14 Si 1.86798 * 120.00372 * 175.69330 * 12 10 9 15 15 H 1.48503 * 109.47069 * 59.99862 * 14 12 10 16 16 H 1.48502 * 109.47407 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46858 * 299.99605 * 14 12 10 18 18 C 1.40867 * 119.67185 * 359.75505 * 9 8 7 19 19 C 1.36372 * 119.82865 * 0.02562 * 18 9 8 20 20 C 1.46502 * 120.00137 * 180.02562 * 2 1 3 21 21 H 1.08995 * 109.50393 * 180.02562 * 20 2 1 22 22 C 1.53123 * 109.50472 * 59.99444 * 20 2 1 23 23 C 1.53110 * 109.16217 * 182.40268 * 22 20 2 24 24 C 1.53044 * 109.27593 * 57.65830 * 23 22 20 25 25 N 1.46842 * 109.52341 * 300.82063 * 24 23 22 26 26 C 1.46901 * 111.00173 * 185.84126 * 25 24 23 27 27 C 1.46840 * 111.20165 * 61.74099 * 25 24 23 28 28 H 1.09001 * 109.47327 * 90.00244 * 1 2 3 29 29 H 1.08993 * 109.47587 * 329.99521 * 1 2 3 30 30 H 1.09004 * 109.46757 * 209.99387 * 1 2 3 31 31 H 0.96991 * 120.00001 * 355.70153 * 5 3 2 32 32 H 1.07999 * 119.92389 * 0.02562 * 7 6 5 33 33 H 1.08001 * 120.08846 * 180.22962 * 8 7 6 34 34 H 0.96998 * 119.99831 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.08372 * 180.02562 * 18 9 8 36 36 H 1.08002 * 119.91424 * 180.02562 * 19 18 9 37 37 H 1.09000 * 109.52663 * 302.31391 * 22 20 2 38 38 H 1.08999 * 109.51695 * 62.43881 * 22 20 2 39 39 H 1.08996 * 109.50916 * 177.59856 * 23 22 20 40 40 H 1.09000 * 109.51130 * 297.68427 * 23 22 20 41 41 H 1.08995 * 109.45984 * 60.84021 * 24 23 22 42 42 H 1.09005 * 109.45992 * 180.80491 * 24 23 22 43 43 H 1.09004 * 109.47113 * 56.04031 * 26 25 24 44 44 H 1.08996 * 109.47231 * 176.04663 * 26 25 24 45 45 H 1.08998 * 109.46892 * 296.04624 * 26 25 24 46 46 H 1.08995 * 109.47039 * 178.24351 * 27 25 24 47 47 H 1.09007 * 109.46118 * 58.27254 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3546 1.1672 -0.0005 5 7 1.4649 2.3344 0.0005 6 6 2.1583 3.5386 0.0908 7 6 1.6026 4.6081 0.7927 8 6 2.2779 5.7890 0.8897 9 6 3.5349 5.9303 0.2697 10 6 4.2379 7.1509 0.3617 11 1 4.8394 7.4914 -0.4682 12 6 4.1556 7.9194 1.5276 13 7 3.3612 7.5501 2.5002 14 14 5.1792 9.4728 1.6967 15 1 4.8188 10.4234 0.6143 16 1 4.9128 10.1000 3.0161 17 1 6.6204 9.1294 1.5945 18 6 4.0871 4.8473 -0.4420 19 6 3.4020 3.6711 -0.5264 20 6 2.1976 -1.2687 -0.0006 21 1 3.2693 -1.0701 0.0000 22 6 1.8281 -2.0718 -1.2508 23 6 2.5514 -3.4208 -1.2136 24 6 2.1683 -4.1642 0.0681 25 7 2.5426 -3.3554 1.2352 26 6 2.3167 -4.0961 2.4835 27 6 1.8247 -2.0746 1.2460 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 0.8899 0.5139 30 1 -0.3633 -0.8901 0.5138 31 1 0.4970 2.3356 -0.0621 32 1 0.6371 4.4995 1.2644 33 1 1.8481 6.6152 1.4367 34 1 3.3039 8.0832 3.3085 35 1 5.0505 4.9481 -0.9195 36 1 3.8242 2.8398 -1.0714 37 1 0.7508 -2.2365 -1.2729 38 1 2.1305 -1.5198 -2.1407 39 1 2.2593 -4.0145 -2.0797 40 1 3.6288 -3.2568 -1.2314 41 1 1.0927 -4.3402 0.0781 42 1 2.6927 -5.1191 0.1047 43 1 2.8633 -5.0386 2.4508 44 1 2.6672 -3.5018 3.3272 45 1 1.2517 -4.2977 2.5986 46 1 2.0995 -1.5116 2.1379 47 1 0.7506 -2.2603 1.2505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929428167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:28 Heat of formation + Delta-G solvation = -11.178741 kcal Electronic energy + Delta-G solvation = -26508.554756 eV Core-core repulsion = 22883.443041 eV Total energy + Delta-G solvation = -3625.111716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75508 -40.12417 -39.05038 -36.62738 -36.17216 -34.76732 -33.81375 -31.56272 -31.24060 -30.27768 -27.92118 -27.65998 -26.71038 -24.25535 -23.83431 -23.16044 -22.45299 -21.05785 -20.31653 -19.37790 -19.12883 -18.07514 -17.18091 -16.89664 -16.75101 -16.38073 -15.96164 -15.71427 -15.53515 -15.23196 -14.79982 -14.66395 -14.54092 -14.30391 -14.10110 -13.95027 -13.63206 -13.58300 -13.33889 -13.21143 -13.09133 -12.84782 -12.75498 -12.64247 -12.45821 -12.33985 -11.85666 -11.76131 -11.60093 -11.54386 -11.38840 -11.22542 -10.96698 -10.63517 -9.72533 -9.45041 -9.27463 -8.67388 -8.48262 -6.30701 0.85772 1.15656 1.40076 1.48986 1.52251 1.60887 2.16732 2.25848 2.82520 2.92874 3.13230 3.69387 3.75134 3.78637 3.99538 4.08135 4.17345 4.30020 4.39649 4.47881 4.51217 4.54462 4.56231 4.57907 4.66895 4.73758 4.82246 4.85704 4.93327 4.95408 5.01106 5.06581 5.14220 5.16268 5.23232 5.31004 5.36748 5.45219 5.54144 5.69250 5.80686 6.03634 6.06423 6.08922 6.15070 6.20569 6.41434 6.69765 6.98328 7.01254 7.03320 7.62088 8.44442 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027582 B = 0.002468 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.920800 B =11342.838345 C =11443.939121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.622 5.622 3 C 0.693 3.307 4 O -0.623 6.623 5 N -0.658 5.658 6 C 0.040 3.960 7 C -0.120 4.120 8 C -0.157 4.157 9 C 0.066 3.934 10 C -0.499 4.499 11 H 0.072 0.928 12 C 0.027 3.973 13 N -0.843 5.843 14 Si 0.988 3.012 15 H -0.257 1.257 16 H -0.268 1.268 17 H -0.267 1.267 18 C -0.219 4.219 19 C -0.098 4.098 20 C 0.159 3.841 21 H 0.069 0.931 22 C -0.120 4.120 23 C -0.112 4.112 24 C 0.056 3.944 25 N -0.562 5.562 26 C 0.028 3.972 27 C 0.060 3.940 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.413 0.587 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.284 0.716 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.036 0.964 46 H 0.056 0.944 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.727 -21.410 -2.544 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.359 5.359 3 C 0.395 3.605 4 O -0.504 6.504 5 N -0.307 5.307 6 C -0.054 4.054 7 C -0.140 4.140 8 C -0.177 4.177 9 C 0.064 3.936 10 C -0.530 4.530 11 H 0.090 0.910 12 C -0.184 4.184 13 N -0.471 5.471 14 Si 0.809 3.191 15 H -0.182 1.182 16 H -0.192 1.192 17 H -0.191 1.191 18 C -0.239 4.239 19 C -0.118 4.118 20 C 0.054 3.946 21 H 0.087 0.913 22 C -0.159 4.159 23 C -0.151 4.151 24 C -0.072 4.072 25 N -0.288 5.288 26 C -0.120 4.120 27 C -0.069 4.069 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.251 0.749 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.491 -21.291 -2.329 23.426 hybrid contribution -0.475 0.745 0.335 0.945 sum -9.966 -20.545 -1.994 22.922 Atomic orbital electron populations 1.22013 0.77532 1.04449 1.03334 1.47039 1.07708 1.03388 1.77739 1.16158 0.85032 0.81312 0.78024 1.90873 1.13896 1.86400 1.59213 1.42031 1.09917 1.02421 1.76296 1.17113 0.96038 0.86226 1.06005 1.20515 1.00608 0.93386 0.99493 1.21165 0.94853 0.97754 1.03939 1.18019 0.91610 0.92887 0.91120 1.19680 1.27146 1.04633 1.01506 0.90984 1.26731 0.95798 1.01438 0.94478 1.69828 1.32774 1.38329 1.06124 0.85159 0.78614 0.76738 0.78555 1.18167 1.19210 1.19123 1.20920 1.00194 0.93835 1.08995 1.20503 0.95398 0.96399 0.99488 1.20869 0.96724 0.81370 0.95592 0.91311 1.21889 1.01701 0.96083 0.96219 1.21562 1.00500 0.95057 0.97956 1.22192 0.99284 0.96495 0.89191 1.61760 1.58540 1.04345 1.04139 1.22366 1.00059 0.98814 0.90724 1.22228 0.96763 0.90626 0.97293 0.90819 0.90644 0.88698 0.74883 0.85735 0.86175 0.90514 0.88744 0.87785 0.89822 0.92559 0.88715 0.92449 0.93527 0.89316 0.89976 0.92026 0.94581 0.92506 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 9.18 127.77 1.17 2.23 16 2 N -0.62 -16.13 2.77 -840.32 -2.32 -18.45 16 3 C 0.69 25.65 8.11 179.06 1.45 27.10 16 4 O -0.62 -29.55 13.09 -3.97 -0.05 -29.60 16 5 N -0.66 -23.39 5.15 -316.79 -1.63 -25.02 16 6 C 0.04 1.84 6.30 38.56 0.24 2.08 16 7 C -0.12 -5.50 9.90 22.13 0.22 -5.28 16 8 C -0.16 -8.39 8.61 22.48 0.19 -8.19 16 9 C 0.07 3.75 5.55 -21.27 -0.12 3.63 16 10 C -0.50 -28.12 9.02 23.39 0.21 -27.90 16 11 H 0.07 3.92 7.85 -2.91 -0.02 3.90 16 12 C 0.03 1.42 5.42 85.23 0.46 1.89 16 13 N -0.84 -45.37 10.60 21.82 0.23 -45.14 16 14 Si 0.99 40.03 29.56 68.60 2.03 42.06 16 15 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 16 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 18 C -0.22 -11.92 9.74 22.48 0.22 -11.70 16 19 C -0.10 -4.97 8.61 22.13 0.19 -4.78 16 20 C 0.16 3.91 2.69 45.05 0.12 4.03 16 21 H 0.07 2.32 6.90 -2.39 -0.02 2.31 16 22 C -0.12 -2.17 5.32 30.67 0.16 -2.01 16 23 C -0.11 -1.69 6.09 30.65 0.19 -1.51 16 24 C 0.06 0.76 5.46 86.33 0.47 1.23 16 25 N -0.56 -10.49 4.91 -922.59 -4.53 -15.02 16 26 C 0.03 0.40 9.59 127.69 1.22 1.63 16 27 C 0.06 1.23 4.74 86.33 0.41 1.64 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 1.09 6.43 -2.39 -0.02 1.07 16 30 H 0.09 1.03 6.40 -2.39 -0.02 1.02 16 31 H 0.41 11.00 6.61 -92.71 -0.61 10.39 16 32 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 33 H 0.12 6.64 6.13 -2.91 -0.02 6.62 16 34 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 35 H 0.09 4.95 8.06 -2.91 -0.02 4.93 16 36 H 0.10 5.36 6.22 -2.91 -0.02 5.34 16 37 H 0.08 1.14 7.60 -2.39 -0.02 1.12 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.09 1.01 8.09 -2.38 -0.02 0.99 16 43 H 0.08 0.96 8.10 -2.38 -0.02 0.94 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 47 H 0.06 0.89 6.62 -2.38 -0.02 0.88 16 Total: -1.00 -72.02 368.22 0.90 -71.12 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.36 Total: 35.98 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 6.82 Total: -15.93 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -8.25 Total: -103.63 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.05 Total: -29.60 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -72.02 0.90 -71.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929428167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.939 kcal (2) G-P(sol) polarization free energy of solvation -72.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds