Wall clock time and date at job start Tue Mar 31 2020 11:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 117.00171 * 2 1 4 4 C 1.38811 * 120.43564 * 0.02562 * 3 2 1 5 5 N 1.31808 * 120.84227 * 179.97438 * 4 3 2 6 6 C 1.31802 * 121.85749 * 0.02562 * 5 4 3 7 7 C 1.38925 * 120.78140 * 359.97438 * 6 5 4 8 8 N 1.39696 * 120.46843 * 180.02562 * 7 6 5 9 9 C 1.46956 * 110.99845 * 0.02562 * 8 7 6 10 10 C 1.53050 * 109.36857 * 183.18743 * 9 8 7 11 11 N 1.46955 * 109.36180 * 301.59962 * 10 9 8 12 12 C 1.46907 * 110.99881 * 183.18253 * 11 10 9 13 13 C 1.53002 * 109.47115 * 164.19980 * 12 11 10 14 14 C 1.50704 * 115.54672 * 305.34339 * 13 12 11 15 15 H 1.08001 * 120.00171 * 116.99178 * 14 13 12 16 16 C 1.37876 * 120.00390 * 296.98335 * 14 13 12 17 17 N 1.31514 * 120.00097 * 174.39205 * 16 14 13 18 18 Si 1.86807 * 119.99683 * 354.66652 * 16 14 13 19 19 H 1.48494 * 109.46921 * 94.02984 * 18 16 14 20 20 H 1.48504 * 109.46900 * 214.03371 * 18 16 14 21 21 H 1.48503 * 109.47152 * 334.02976 * 18 16 14 22 22 C 1.52992 * 117.49946 * 91.01038 * 13 12 11 23 23 C 1.52990 * 117.50107 * 159.67385 * 13 12 11 24 24 C 1.46952 * 110.88277 * 59.32022 * 11 10 9 25 25 C 1.46960 * 111.00307 * 123.80270 * 8 7 6 26 26 C 1.38960 * 120.43172 * 180.27583 * 3 2 1 27 27 H 1.09006 * 109.47086 * 59.99559 * 1 2 3 28 28 H 1.08997 * 109.47405 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47018 * 299.99990 * 1 2 3 30 30 H 1.07999 * 119.57763 * 359.97100 * 4 3 2 31 31 H 1.08000 * 119.61102 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.49014 * 63.22043 * 9 8 7 33 33 H 1.09003 * 109.50680 * 303.16606 * 9 8 7 34 34 H 1.08996 * 109.49554 * 181.63115 * 10 9 8 35 35 H 1.09009 * 109.50647 * 61.57339 * 10 9 8 36 36 H 1.09004 * 109.46587 * 44.20492 * 12 11 10 37 37 H 1.08995 * 109.47299 * 284.19896 * 12 11 10 38 38 H 0.97008 * 119.99607 * 180.02562 * 17 16 14 39 39 H 1.09002 * 117.50498 * 215.00380 * 22 13 12 40 40 H 1.08998 * 117.49907 * 0.02562 * 22 13 12 41 41 H 1.09009 * 117.49995 * 359.97438 * 23 13 12 42 42 H 1.08998 * 117.50308 * 144.97146 * 23 13 12 43 43 H 1.09001 * 109.49139 * 60.64346 * 24 11 10 44 44 H 1.09005 * 109.49143 * 180.71432 * 24 11 10 45 45 H 1.09000 * 109.48445 * 296.78397 * 25 8 7 46 46 H 1.09003 * 109.48792 * 56.81993 * 25 8 7 47 47 H 1.08000 * 120.84580 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2989 2.3808 0.0005 5 7 1.8890 3.5594 0.0010 6 6 3.2015 3.6803 0.0006 7 6 4.0189 2.5570 0.0000 8 7 5.4093 2.6927 0.0001 9 6 5.8001 4.1093 0.0013 10 6 7.3248 4.2153 -0.0789 11 7 7.9232 3.5059 1.0605 12 6 9.3853 3.6486 1.0605 13 6 9.9363 3.2533 2.4320 14 6 9.3377 3.9821 3.6075 15 1 8.7867 3.4351 4.3583 16 6 9.4936 5.3470 3.7247 17 7 8.8801 5.9986 4.6883 18 14 10.5701 6.2717 2.5100 19 1 9.7296 6.7986 1.4050 20 1 11.2414 7.4006 3.2031 21 1 11.5953 5.3509 1.9563 22 6 10.3382 1.7915 2.6373 23 6 11.4155 2.8721 2.5160 24 6 7.5324 2.0893 1.0592 25 6 6.0077 1.9837 1.1398 26 6 3.4331 1.2940 -0.0058 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2204 2.3245 0.0005 31 1 3.6467 4.6642 0.0014 32 1 5.4506 4.5822 0.9191 33 1 5.3550 4.6105 -0.8583 34 1 7.6186 5.2645 -0.0490 35 1 7.6723 3.7668 -1.0097 36 1 9.6491 4.6846 0.8478 37 1 9.8137 3.0002 0.2962 38 1 8.9895 6.9590 4.7705 39 1 10.1699 1.3567 3.6225 40 1 10.2106 1.1114 1.7951 41 1 11.9963 2.9025 1.5939 42 1 11.9560 3.1487 3.4212 43 1 7.8820 1.6164 0.1414 44 1 7.9775 1.5885 1.9191 45 1 5.6604 2.4328 2.0703 46 1 5.7136 0.9345 1.1104 47 1 4.0414 0.4016 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931212509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:31 Heat of formation + Delta-G solvation = 58.124340 kcal Electronic energy + Delta-G solvation = -27099.385440 eV Core-core repulsion = 23477.278932 eV Total energy + Delta-G solvation = -3622.106508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02635 -39.44907 -38.15112 -36.93414 -34.71493 -32.02634 -31.96878 -30.88190 -29.86215 -27.95767 -27.22663 -25.55890 -24.53968 -23.76182 -22.50149 -21.90752 -21.43692 -19.70636 -18.91443 -18.40630 -17.21025 -16.63146 -16.47597 -16.10404 -15.91263 -15.13208 -14.92003 -14.70124 -14.46897 -14.32729 -14.05096 -13.87242 -13.52915 -13.23034 -13.16436 -12.76876 -12.56431 -12.26941 -12.12169 -12.02017 -11.74324 -11.56753 -11.13968 -11.05220 -10.90654 -10.81798 -10.59134 -10.39247 -10.26067 -10.04869 -9.55308 -9.41994 -8.99076 -8.78346 -8.57053 -8.34813 -7.99959 -7.61380 -5.99031 -3.95402 1.03772 1.20367 2.85989 3.29764 3.41838 3.46231 3.56047 3.87678 4.28972 4.45263 4.50194 4.54437 4.75565 4.78671 4.83562 4.91119 4.98078 5.04452 5.13307 5.20634 5.23641 5.36034 5.49633 5.50575 5.60065 5.64791 5.74783 5.83654 5.85537 5.91298 5.98677 6.07240 6.11580 6.17631 6.20530 6.23194 6.33092 6.46753 6.57062 6.74144 6.84362 6.97416 7.04865 7.09631 7.14121 7.61648 7.71852 7.88957 7.89615 8.61700 9.03349 9.65712 11.13884 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020927 B = 0.003238 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.694912 B = 8644.244202 C = 9108.619822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.101 3.899 4 C -0.018 4.018 5 N -0.427 5.427 6 C 0.015 3.985 7 C 0.115 3.885 8 N -0.485 5.485 9 C 0.052 3.948 10 C 0.055 3.945 11 N -0.507 5.507 12 C 0.095 3.905 13 C 0.011 3.989 14 C -0.455 4.455 15 H 0.073 0.927 16 C 0.082 3.918 17 N -0.901 5.901 18 Si 0.868 3.132 19 H -0.282 1.282 20 H -0.296 1.296 21 H -0.254 1.254 22 C -0.188 4.188 23 C -0.197 4.197 24 C 0.062 3.938 25 C 0.061 3.939 26 C -0.139 4.139 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.154 0.846 31 H 0.162 0.838 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.034 0.966 36 H 0.062 0.938 37 H 0.014 0.986 38 H 0.261 0.739 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.030 0.970 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.081 0.919 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.209 -9.468 -11.717 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.053 3.947 4 C -0.178 4.178 5 N -0.136 5.136 6 C -0.147 4.147 7 C 0.013 3.987 8 N -0.199 5.199 9 C -0.075 4.075 10 C -0.074 4.074 11 N -0.231 5.231 12 C -0.033 4.033 13 C 0.010 3.990 14 C -0.492 4.492 15 H 0.091 0.909 16 C -0.119 4.119 17 N -0.539 5.539 18 Si 0.696 3.304 19 H -0.209 1.209 20 H -0.223 1.223 21 H -0.179 1.179 22 C -0.225 4.225 23 C -0.235 4.235 24 C -0.066 4.066 25 C -0.063 4.063 26 C -0.167 4.167 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.171 0.829 31 H 0.179 0.821 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.048 0.952 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.099 0.901 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.576 -8.739 -11.612 19.218 hybrid contribution 0.896 -0.041 -0.829 1.222 sum -11.680 -8.780 -12.441 19.191 Atomic orbital electron populations 1.23104 0.78036 1.04189 1.01632 1.86064 1.21601 1.26254 1.88513 1.19840 0.92597 0.85538 0.96720 1.22718 1.00256 0.87219 1.07560 1.67403 1.11738 1.26307 1.08120 1.22942 0.88787 0.98638 1.04301 1.19801 0.89966 0.93469 0.95422 1.59173 1.04478 1.14586 1.41694 1.22418 0.96597 0.86305 1.02144 1.22168 0.92795 0.99905 0.92506 1.61893 1.10047 1.10823 1.40340 1.21798 0.85824 0.99418 0.96234 1.19378 0.92106 0.93443 0.94121 1.20068 1.32657 0.91802 1.04684 0.90897 1.24800 0.94974 0.97251 0.94907 1.69901 1.42667 1.08319 1.33036 0.87045 0.81889 0.79704 0.81716 1.20902 1.22345 1.17854 1.22823 1.06355 0.92635 1.00735 1.23073 0.93906 1.05646 1.00899 1.22174 0.93078 0.90148 1.01229 1.22404 0.95320 0.98122 0.90502 1.20420 0.91611 0.97605 1.07098 0.92441 0.88019 0.92334 0.82876 0.82097 0.91655 0.89827 0.90009 0.94825 0.91963 0.96776 0.92908 0.89837 0.91379 0.91646 0.89550 0.95188 0.88587 0.91960 0.90099 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.31 10.51 -19.43 -0.20 -3.51 16 3 C 0.10 1.22 6.71 -39.10 -0.26 0.96 16 4 C -0.02 -0.22 10.22 -17.35 -0.18 -0.40 16 5 N -0.43 -5.96 10.35 -12.95 -0.13 -6.09 16 6 C 0.01 0.20 10.00 -17.31 -0.17 0.03 16 7 C 0.12 1.57 5.64 -83.66 -0.47 1.10 16 8 N -0.48 -6.81 4.76 -170.84 -0.81 -7.63 16 9 C 0.05 0.74 4.30 -3.77 -0.02 0.72 16 10 C 0.05 0.88 5.58 -3.77 -0.02 0.86 16 11 N -0.51 -9.55 4.35 -234.46 -1.02 -10.57 16 12 C 0.09 1.91 4.44 -3.82 -0.02 1.89 16 13 C 0.01 0.24 0.60 -155.67 -0.09 0.15 16 14 C -0.45 -12.22 9.09 -34.44 -0.31 -12.53 16 15 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 16 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 17 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 18 Si 0.87 21.09 24.79 -169.99 -4.21 16.87 16 19 H -0.28 -6.72 7.07 56.52 0.40 -6.32 16 20 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 21 H -0.25 -5.82 5.88 56.52 0.33 -5.49 16 22 C -0.19 -3.64 8.37 -26.70 -0.22 -3.86 16 23 C -0.20 -4.04 8.34 -26.70 -0.22 -4.26 16 24 C 0.06 1.01 5.36 -3.77 -0.02 0.99 16 25 C 0.06 0.90 5.39 -3.76 -0.02 0.88 16 26 C -0.14 -1.77 9.27 -38.95 -0.36 -2.13 16 27 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 30 H 0.15 1.39 6.31 -52.49 -0.33 1.06 16 31 H 0.16 2.03 5.82 -52.49 -0.31 1.73 16 32 H 0.07 1.01 7.60 -51.93 -0.39 0.62 16 33 H 0.08 1.00 7.19 -51.93 -0.37 0.63 16 34 H 0.08 1.34 8.02 -51.93 -0.42 0.92 16 35 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.06 1.33 4.60 -51.93 -0.24 1.09 16 37 H 0.01 0.26 8.00 -51.93 -0.42 -0.15 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.07 1.16 8.06 -51.93 -0.42 0.75 16 41 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 42 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.10 1.66 6.11 -51.93 -0.32 1.34 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.08 1.02 6.89 -51.93 -0.36 0.66 16 47 H 0.14 1.68 7.28 -52.49 -0.38 1.30 16 LS Contribution 361.98 15.07 5.45 5.45 Total: -1.00 -31.02 361.98 -8.99 -40.01 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.34 Total: 4.06 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.50 Total: -12.27 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -1.19 Total: -50.62 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.20 Total: -3.51 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.21 Total: 16.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.02 -8.99 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931212509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.133 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds