Wall clock time and date at job start Tue Mar 31 2020 11:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 117.00171 * 2 1 4 4 C 1.38811 * 120.43564 * 0.02562 * 3 2 1 5 5 N 1.31808 * 120.84227 * 179.97438 * 4 3 2 6 6 C 1.31802 * 121.85749 * 0.02562 * 5 4 3 7 7 C 1.38925 * 120.78140 * 359.97438 * 6 5 4 8 8 N 1.39696 * 120.46843 * 180.02562 * 7 6 5 9 9 C 1.46956 * 110.99845 * 0.02562 * 8 7 6 10 10 C 1.53050 * 109.36857 * 183.18743 * 9 8 7 11 11 N 1.46955 * 109.36180 * 301.59962 * 10 9 8 12 12 C 1.46907 * 110.99881 * 183.18253 * 11 10 9 13 13 C 1.53002 * 109.47115 * 164.19980 * 12 11 10 14 14 C 1.50704 * 115.54672 * 305.34339 * 13 12 11 15 15 H 1.08001 * 120.00171 * 116.99178 * 14 13 12 16 16 C 1.37876 * 120.00390 * 296.98335 * 14 13 12 17 17 N 1.31514 * 120.00097 * 174.39205 * 16 14 13 18 18 Si 1.86807 * 119.99683 * 354.66652 * 16 14 13 19 19 H 1.48494 * 109.46921 * 94.02984 * 18 16 14 20 20 H 1.48504 * 109.46900 * 214.03371 * 18 16 14 21 21 H 1.48503 * 109.47152 * 334.02976 * 18 16 14 22 22 C 1.52992 * 117.49946 * 91.01038 * 13 12 11 23 23 C 1.52990 * 117.50107 * 159.67385 * 13 12 11 24 24 C 1.46952 * 110.88277 * 59.32022 * 11 10 9 25 25 C 1.46960 * 111.00307 * 123.80270 * 8 7 6 26 26 C 1.38960 * 120.43172 * 180.27583 * 3 2 1 27 27 H 1.09006 * 109.47086 * 59.99559 * 1 2 3 28 28 H 1.08997 * 109.47405 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47018 * 299.99990 * 1 2 3 30 30 H 1.07999 * 119.57763 * 359.97100 * 4 3 2 31 31 H 1.08000 * 119.61102 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.49014 * 63.22043 * 9 8 7 33 33 H 1.09003 * 109.50680 * 303.16606 * 9 8 7 34 34 H 1.08996 * 109.49554 * 181.63115 * 10 9 8 35 35 H 1.09009 * 109.50647 * 61.57339 * 10 9 8 36 36 H 1.09004 * 109.46587 * 44.20492 * 12 11 10 37 37 H 1.08995 * 109.47299 * 284.19896 * 12 11 10 38 38 H 0.97008 * 119.99607 * 180.02562 * 17 16 14 39 39 H 1.09002 * 117.50498 * 215.00380 * 22 13 12 40 40 H 1.08998 * 117.49907 * 0.02562 * 22 13 12 41 41 H 1.09009 * 117.49995 * 359.97438 * 23 13 12 42 42 H 1.08998 * 117.50308 * 144.97146 * 23 13 12 43 43 H 1.09001 * 109.49139 * 60.64346 * 24 11 10 44 44 H 1.09005 * 109.49143 * 180.71432 * 24 11 10 45 45 H 1.09000 * 109.48445 * 296.78397 * 25 8 7 46 46 H 1.09003 * 109.48792 * 56.81993 * 25 8 7 47 47 H 1.08000 * 120.84580 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2989 2.3808 0.0005 5 7 1.8890 3.5594 0.0010 6 6 3.2015 3.6803 0.0006 7 6 4.0189 2.5570 0.0000 8 7 5.4093 2.6927 0.0001 9 6 5.8001 4.1093 0.0013 10 6 7.3248 4.2153 -0.0789 11 7 7.9232 3.5059 1.0605 12 6 9.3853 3.6486 1.0605 13 6 9.9363 3.2533 2.4320 14 6 9.3377 3.9821 3.6075 15 1 8.7867 3.4351 4.3583 16 6 9.4936 5.3470 3.7247 17 7 8.8801 5.9986 4.6883 18 14 10.5701 6.2717 2.5100 19 1 9.7296 6.7986 1.4050 20 1 11.2414 7.4006 3.2031 21 1 11.5953 5.3509 1.9563 22 6 10.3382 1.7915 2.6373 23 6 11.4155 2.8721 2.5160 24 6 7.5324 2.0893 1.0592 25 6 6.0077 1.9837 1.1398 26 6 3.4331 1.2940 -0.0058 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2204 2.3245 0.0005 31 1 3.6467 4.6642 0.0014 32 1 5.4506 4.5822 0.9191 33 1 5.3550 4.6105 -0.8583 34 1 7.6186 5.2645 -0.0490 35 1 7.6723 3.7668 -1.0097 36 1 9.6491 4.6846 0.8478 37 1 9.8137 3.0002 0.2962 38 1 8.9895 6.9590 4.7705 39 1 10.1699 1.3567 3.6225 40 1 10.2106 1.1114 1.7951 41 1 11.9963 2.9025 1.5939 42 1 11.9560 3.1487 3.4212 43 1 7.8820 1.6164 0.1414 44 1 7.9775 1.5885 1.9191 45 1 5.6604 2.4328 2.0703 46 1 5.7136 0.9345 1.1104 47 1 4.0414 0.4016 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931212509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:30 Heat of formation + Delta-G solvation = 35.942953 kcal Electronic energy + Delta-G solvation = -27100.347297 eV Core-core repulsion = 23477.278932 eV Total energy + Delta-G solvation = -3623.068366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01104 -40.53358 -39.29397 -38.28031 -36.03542 -34.11649 -32.99536 -32.06610 -30.93526 -28.98032 -28.23041 -27.39488 -25.64555 -25.16482 -23.64588 -23.01733 -22.90693 -20.91550 -20.74558 -19.33654 -18.25920 -18.12852 -17.58460 -17.17177 -16.84747 -16.80785 -16.06846 -15.89942 -15.85983 -15.56094 -15.35412 -15.10647 -14.79151 -14.71121 -14.35495 -14.19164 -13.78294 -13.61105 -13.37971 -12.96143 -12.91004 -12.79299 -12.45698 -12.42282 -12.30604 -12.26464 -12.14169 -11.85428 -11.78338 -11.45467 -11.26958 -10.84770 -10.55397 -10.43554 -10.19169 -9.71489 -9.06833 -8.96875 -8.15080 -6.14350 0.05672 0.22254 1.36326 1.43189 1.54319 2.07311 2.46389 2.55943 2.86231 2.89527 3.21370 3.45975 3.55586 3.62918 3.73449 3.86849 3.98172 4.01723 4.09875 4.17335 4.26429 4.35917 4.38135 4.40632 4.41115 4.47098 4.51896 4.54891 4.61219 4.68903 4.77068 4.81031 4.85255 4.86657 4.92134 4.93577 5.01539 5.05303 5.14358 5.25640 5.41507 5.55486 5.72242 5.82158 5.96736 6.21623 6.29667 6.34952 6.47342 6.87665 6.90836 7.50186 9.01846 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020927 B = 0.003238 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.694912 B = 8644.244202 C = 9108.619822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.104 3.896 4 C -0.017 4.017 5 N -0.448 5.448 6 C 0.001 3.999 7 C 0.103 3.897 8 N -0.479 5.479 9 C 0.057 3.943 10 C 0.057 3.943 11 N -0.539 5.539 12 C 0.101 3.899 13 C -0.016 4.016 14 C -0.445 4.445 15 H 0.023 0.977 16 C 0.024 3.976 17 N -0.956 5.956 18 Si 0.928 3.072 19 H -0.274 1.274 20 H -0.307 1.307 21 H -0.227 1.227 22 C -0.167 4.167 23 C -0.192 4.192 24 C 0.067 3.933 25 C 0.068 3.932 26 C -0.145 4.145 27 H 0.070 0.930 28 H 0.124 0.876 29 H 0.067 0.933 30 H 0.182 0.818 31 H 0.164 0.836 32 H 0.043 0.957 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.041 0.959 38 H 0.259 0.741 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.033 0.967 46 H 0.103 0.897 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.346 -11.203 -14.595 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.055 3.945 4 C -0.176 4.176 5 N -0.157 5.157 6 C -0.159 4.159 7 C 0.002 3.998 8 N -0.194 5.194 9 C -0.070 4.070 10 C -0.071 4.071 11 N -0.263 5.263 12 C -0.026 4.026 13 C -0.017 4.017 14 C -0.483 4.483 15 H 0.041 0.959 16 C -0.171 4.171 17 N -0.598 5.598 18 Si 0.754 3.246 19 H -0.200 1.200 20 H -0.235 1.235 21 H -0.149 1.149 22 C -0.204 4.204 23 C -0.230 4.230 24 C -0.061 4.061 25 C -0.057 4.057 26 C -0.173 4.173 27 H 0.089 0.911 28 H 0.142 0.858 29 H 0.085 0.915 30 H 0.199 0.801 31 H 0.181 0.819 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.051 0.949 46 H 0.121 0.879 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.719 -10.509 -14.513 21.974 hybrid contribution 0.750 0.341 0.154 0.838 sum -11.969 -10.168 -14.359 21.280 Atomic orbital electron populations 1.23461 0.75734 1.06148 1.02680 1.86065 1.23964 1.25385 1.88093 1.19878 0.92490 0.86237 0.95901 1.23182 1.01618 0.86658 1.06163 1.67426 1.11831 1.27434 1.08981 1.23028 0.89065 0.98952 1.04865 1.19807 0.89623 0.93919 0.96400 1.59226 1.04904 1.14128 1.41099 1.22367 0.95702 0.86759 1.02131 1.22174 0.93524 0.99236 0.92211 1.61812 1.09628 1.12567 1.42330 1.21630 0.86775 0.99084 0.95140 1.19289 0.93493 0.95370 0.93551 1.20200 1.31169 0.91774 1.05123 0.95903 1.25579 0.96509 0.98333 0.96723 1.70072 1.45421 1.08452 1.35835 0.86079 0.80698 0.78324 0.79471 1.20028 1.23488 1.14923 1.22838 1.04304 0.91716 1.01521 1.23088 0.92906 1.05345 1.01641 1.22115 0.93808 0.88853 1.01288 1.22309 0.94521 0.99234 0.89655 1.20599 0.92371 0.97546 1.06818 0.91148 0.85765 0.91464 0.80135 0.81888 0.93837 0.87491 0.90839 0.93156 0.93240 0.94129 0.93251 0.90880 0.88110 0.88819 0.90916 0.93450 0.90010 0.94894 0.87878 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.82 113.37 1.11 1.25 16 2 O -0.32 -6.09 10.51 -92.44 -0.97 -7.06 16 3 C 0.10 2.31 6.71 22.58 0.15 2.46 16 4 C -0.02 -0.37 10.22 84.83 0.87 0.50 16 5 N -0.45 -12.10 10.35 -194.88 -2.02 -14.12 16 6 C 0.00 0.03 10.00 84.86 0.85 0.88 16 7 C 0.10 2.74 5.64 38.29 0.22 2.95 16 8 N -0.48 -12.96 4.76 -694.42 -3.31 -16.26 16 9 C 0.06 1.59 4.30 86.31 0.37 1.97 16 10 C 0.06 1.75 5.58 86.31 0.48 2.23 16 11 N -0.54 -19.81 4.35 -895.69 -3.90 -23.70 16 12 C 0.10 3.86 4.44 86.30 0.38 4.25 16 13 C -0.02 -0.68 0.60 -52.93 -0.03 -0.71 16 14 C -0.44 -24.64 9.09 25.60 0.23 -24.41 16 15 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 16 C 0.02 1.41 5.47 84.65 0.46 1.87 16 17 N -0.96 -60.29 13.96 21.45 0.30 -59.99 16 18 Si 0.93 43.88 24.79 68.60 1.70 45.58 16 19 H -0.27 -12.49 7.07 99.48 0.70 -11.79 16 20 H -0.31 -14.92 7.11 99.48 0.71 -14.22 16 21 H -0.23 -9.56 5.88 99.48 0.59 -8.98 16 22 C -0.17 -6.09 8.37 30.62 0.26 -5.83 16 23 C -0.19 -7.36 8.34 30.61 0.26 -7.10 16 24 C 0.07 2.11 5.36 86.31 0.46 2.57 16 25 C 0.07 1.96 5.39 86.31 0.46 2.42 16 26 C -0.14 -3.50 9.27 22.68 0.21 -3.29 16 27 H 0.07 0.52 7.68 -2.38 -0.02 0.50 16 28 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.56 7.68 -2.39 -0.02 0.54 16 30 H 0.18 2.80 6.31 -2.91 -0.02 2.78 16 31 H 0.16 4.15 5.82 -2.91 -0.02 4.14 16 32 H 0.04 1.39 7.60 -2.39 -0.02 1.37 16 33 H 0.11 2.45 7.19 -2.39 -0.02 2.43 16 34 H 0.07 2.35 8.02 -2.39 -0.02 2.33 16 35 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.05 2.00 4.60 -2.39 -0.01 1.98 16 37 H 0.04 1.34 8.00 -2.39 -0.02 1.32 16 38 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 39 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.10 3.04 8.06 -2.39 -0.02 3.03 16 41 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 42 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 2.76 6.11 -2.38 -0.01 2.74 16 45 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.10 2.46 6.89 -2.39 -0.02 2.44 16 47 H 0.15 3.30 7.28 -2.91 -0.02 3.28 16 Total: -1.00 -69.67 361.98 -0.61 -70.28 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.84 Total: 23.30 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 6.75 Total: -18.01 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -8.92 Total: -114.07 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.97 Total: -7.06 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.70 Total: 45.58 kcal Total: -69.67 -0.61 -70.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931212509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.218 kcal (2) G-P(sol) polarization free energy of solvation -69.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds