Wall clock time and date at job start Tue Mar 31 2020 11:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99648 * 2 1 4 4 O 1.21590 * 119.99786 * 179.97438 * 3 2 1 5 5 N 1.34774 * 120.00292 * 0.02562 * 3 2 1 6 6 C 1.39953 * 120.00055 * 174.85735 * 5 3 2 7 7 C 1.39282 * 119.94988 * 325.50436 * 6 5 3 8 8 C 1.38490 * 120.43282 * 179.76255 * 7 6 5 9 9 C 1.37686 * 120.31737 * 0.51239 * 8 7 6 10 10 C 1.40744 * 119.88366 * 359.74103 * 9 8 7 11 11 C 1.41408 * 120.21384 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00583 * 205.17145 * 11 10 9 13 13 C 1.39935 * 119.99270 * 25.16739 * 11 10 9 14 14 N 1.30829 * 120.00331 * 16.80871 * 13 11 10 15 15 Si 1.86801 * 119.99721 * 196.80104 * 13 11 10 16 16 H 1.48499 * 109.47328 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47371 * 120.00392 * 15 13 11 18 18 H 1.48511 * 109.47161 * 240.00504 * 15 13 11 19 19 C 1.38241 * 119.94396 * 145.77555 * 6 5 3 20 20 C 1.46498 * 120.00400 * 180.02562 * 2 1 3 21 21 H 1.08996 * 109.53743 * 180.09814 * 20 2 1 22 22 C 1.53127 * 109.49242 * 300.19806 * 20 2 1 23 23 C 1.53116 * 109.15145 * 177.60349 * 22 20 2 24 24 C 1.53035 * 109.28311 * 302.33999 * 23 22 20 25 25 N 1.46849 * 109.52244 * 59.17995 * 24 23 22 26 26 C 1.46895 * 111.00279 * 174.16233 * 25 24 23 27 27 C 1.46853 * 111.19648 * 298.25911 * 25 24 23 28 28 H 1.08999 * 109.46877 * 269.99247 * 1 2 3 29 29 H 1.08996 * 109.47470 * 29.99516 * 1 2 3 30 30 H 1.09002 * 109.47138 * 149.99828 * 1 2 3 31 31 H 0.97006 * 119.99836 * 354.86536 * 5 3 2 32 32 H 1.08004 * 119.78571 * 0.02562 * 7 6 5 33 33 H 1.07998 * 119.84171 * 180.23664 * 8 7 6 34 34 H 1.07994 * 120.05644 * 179.76869 * 9 8 7 35 35 H 0.96999 * 119.99862 * 179.97438 * 14 13 11 36 36 H 1.07993 * 120.16162 * 359.95914 * 19 6 5 37 37 H 1.08999 * 109.52640 * 57.70176 * 22 20 2 38 38 H 1.08994 * 109.57407 * 297.53783 * 22 20 2 39 39 H 1.08999 * 109.50196 * 182.39639 * 23 22 20 40 40 H 1.09006 * 109.53589 * 62.30498 * 23 22 20 41 41 H 1.08994 * 109.46313 * 299.16551 * 24 23 22 42 42 H 1.09001 * 109.46454 * 179.19605 * 24 23 22 43 43 H 1.08994 * 109.47664 * 184.20930 * 26 25 24 44 44 H 1.09008 * 109.47054 * 304.20935 * 26 25 24 45 45 H 1.09003 * 109.47249 * 64.20371 * 26 25 24 46 46 H 1.09000 * 109.45708 * 181.75496 * 27 25 24 47 47 H 1.08995 * 109.46169 * 301.73391 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4649 2.3344 0.0005 6 6 2.1605 3.5440 0.1092 7 6 3.3130 3.6159 0.8880 8 6 4.0118 4.8064 0.9986 9 6 3.5683 5.9357 0.3475 10 6 2.4024 5.8794 -0.4389 11 6 1.9410 7.0348 -1.1111 12 1 0.8954 7.1316 -1.3632 13 6 2.8395 8.0529 -1.4495 14 7 4.1261 7.8158 -1.4521 15 14 2.2017 9.7504 -1.8978 16 1 0.7189 9.7589 -1.8190 17 1 2.7530 10.7524 -0.9505 18 1 2.6264 10.0897 -3.2798 19 6 1.6994 4.6669 -0.5523 20 6 2.1976 -1.2687 -0.0006 21 1 3.2694 -1.0707 0.0013 22 6 1.8243 -2.0748 1.2467 23 6 2.5479 -3.4236 1.2082 24 6 2.1688 -4.1640 -0.0764 25 7 2.5466 -3.3522 -1.2404 26 6 2.3244 -4.0898 -2.4911 27 6 1.8283 -2.0714 -1.2501 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 0.4978 2.3361 -0.0743 32 1 3.6664 2.7364 1.4057 33 1 4.9064 4.8504 1.6020 34 1 4.1145 6.8628 0.4396 35 1 4.7488 8.5214 -1.6870 36 1 0.8039 4.6131 -1.1534 37 1 0.7470 -2.2397 1.2650 38 1 2.1240 -1.5260 2.1394 39 1 2.2533 -4.0194 2.0720 40 1 3.6254 -3.2600 1.2294 41 1 1.0933 -4.3401 -0.0902 42 1 2.6935 -5.1187 -0.1138 43 1 2.6816 -3.4953 -3.3320 44 1 2.8676 -5.0344 -2.4573 45 1 1.2593 -4.2874 -2.6122 46 1 2.1058 -1.5062 -2.1399 47 1 0.7544 -2.2573 -1.2582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931687532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:35 Heat of formation + Delta-G solvation = 5.422213 kcal Electronic energy + Delta-G solvation = -26520.437845 eV Core-core repulsion = 22896.046001 eV Total energy + Delta-G solvation = -3624.391844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45748 -38.99382 -37.29913 -35.44448 -34.42835 -33.33491 -32.78537 -30.24821 -29.77064 -27.90672 -27.04861 -26.76836 -25.17593 -23.35088 -23.05511 -21.23023 -20.86318 -19.85895 -19.20518 -18.01327 -17.39589 -16.44693 -15.73370 -15.61405 -15.29639 -15.12098 -14.75284 -14.63108 -14.47883 -14.01118 -13.65594 -13.47880 -13.40084 -12.95933 -12.83157 -12.78439 -12.56429 -12.44532 -12.15521 -11.97239 -11.61755 -11.52321 -11.16656 -11.12682 -11.09855 -10.87011 -10.75303 -10.73119 -10.43983 -10.12969 -9.56126 -9.48786 -9.16767 -8.90364 -8.70005 -8.49564 -7.40193 -6.84155 -6.66774 -4.30980 2.69696 2.84109 2.92178 3.10547 3.15568 3.25881 3.66964 3.76466 3.97153 4.24255 4.59203 4.63438 4.69914 4.71373 4.82733 4.93327 5.08496 5.13669 5.18725 5.29408 5.31208 5.39434 5.43873 5.53447 5.59896 5.62345 5.71577 5.74127 5.86381 6.04406 6.10720 6.32959 6.48238 6.62609 6.74151 6.77472 6.83931 6.96484 7.00570 7.09170 7.27477 7.38205 7.68574 7.84429 8.08410 8.13690 8.28496 8.43597 8.68191 8.93071 8.96774 9.07791 10.25927 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028154 B = 0.002500 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.293971 B =11199.159488 C =11384.104573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.632 5.632 3 C 0.703 3.297 4 O -0.566 6.566 5 N -0.680 5.680 6 C 0.170 3.830 7 C -0.225 4.225 8 C -0.094 4.094 9 C -0.170 4.170 10 C 0.123 3.877 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.076 3.924 14 N -0.794 5.794 15 Si 0.907 3.093 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.245 4.245 20 C 0.162 3.838 21 H 0.113 0.887 22 C -0.129 4.129 23 C -0.115 4.115 24 C 0.054 3.946 25 N -0.540 5.540 26 C 0.027 3.973 27 C 0.049 3.951 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.395 0.605 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.279 0.721 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.023 0.977 46 H 0.079 0.921 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 -19.799 2.071 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.371 5.371 3 C 0.404 3.596 4 O -0.442 6.442 5 N -0.327 5.327 6 C 0.078 3.922 7 C -0.246 4.246 8 C -0.114 4.114 9 C -0.190 4.190 10 C 0.120 3.880 11 C -0.495 4.495 12 H 0.095 0.905 13 C -0.142 4.142 14 N -0.420 5.420 15 Si 0.732 3.268 16 H -0.185 1.185 17 H -0.198 1.198 18 H -0.201 1.201 19 C -0.268 4.268 20 C 0.057 3.943 21 H 0.131 0.869 22 C -0.167 4.167 23 C -0.153 4.153 24 C -0.074 4.074 25 N -0.265 5.265 26 C -0.121 4.121 27 C -0.080 4.080 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.230 0.770 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.194 -19.605 2.052 20.662 hybrid contribution -1.721 0.545 -0.518 1.878 sum -7.914 -19.060 1.534 20.695 Atomic orbital electron populations 1.21679 0.80609 1.02680 1.01622 1.47038 1.05920 1.04764 1.79351 1.15885 0.85475 0.80173 0.78018 1.90942 1.11261 1.85535 1.56420 1.42777 1.09519 1.04082 1.76361 1.17240 0.94480 0.82807 0.97653 1.20322 0.99339 0.97947 1.06985 1.20582 0.97979 0.93255 0.99537 1.21357 0.99935 0.97710 0.99949 1.17355 0.90698 0.90873 0.89095 1.19519 0.95727 1.00774 1.33482 0.90539 1.25884 0.94447 1.00484 0.93343 1.69848 1.02799 1.33933 1.35411 0.86291 0.80313 0.81705 0.78532 1.18508 1.19765 1.20095 1.20662 1.05481 0.92745 1.07865 1.20819 0.99044 0.81330 0.93116 0.86918 1.21949 1.00230 0.96021 0.98538 1.21553 1.01780 0.95506 0.96482 1.22142 0.98243 0.96491 0.90496 1.61793 1.57871 1.04149 1.02676 1.22347 0.99138 0.98780 0.91838 1.22432 0.95649 0.90516 0.99414 0.92697 0.91431 0.91186 0.76964 0.88100 0.89102 0.86356 0.91003 0.88867 0.92124 0.91100 0.91101 0.90570 0.95010 0.90602 0.91141 0.91234 0.95793 0.90258 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 9.26 59.85 0.55 1.30 16 2 N -0.63 -8.65 2.77 -179.57 -0.50 -9.15 16 3 C 0.70 13.17 8.01 -86.92 -0.70 12.47 16 4 O -0.57 -13.06 13.42 5.29 0.07 -12.99 16 5 N -0.68 -12.76 5.21 -14.27 -0.07 -12.84 16 6 C 0.17 3.98 6.25 -83.76 -0.52 3.46 16 7 C -0.22 -5.55 8.66 -39.10 -0.34 -5.88 16 8 C -0.09 -2.37 10.02 -39.69 -0.40 -2.77 16 9 C -0.17 -4.56 8.69 -38.84 -0.34 -4.89 16 10 C 0.12 3.32 5.57 -106.85 -0.59 2.73 16 11 C -0.47 -12.42 9.05 -37.74 -0.34 -12.76 16 12 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 13 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 14 N -0.79 -21.01 10.94 55.55 0.61 -20.40 16 15 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 16 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 19 C -0.25 -6.07 9.70 -38.68 -0.38 -6.44 16 20 C 0.16 2.03 2.69 -67.85 -0.18 1.85 16 21 H 0.11 1.80 6.90 -51.93 -0.36 1.44 16 22 C -0.13 -1.29 5.32 -26.61 -0.14 -1.43 16 23 C -0.11 -0.98 6.09 -26.65 -0.16 -1.14 16 24 C 0.05 0.44 5.46 -3.83 -0.02 0.42 16 25 N -0.54 -5.41 4.91 -242.96 -1.19 -6.61 16 26 C 0.03 0.22 9.59 60.06 0.58 0.79 16 27 C 0.05 0.53 4.74 -3.83 -0.02 0.51 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.61 6.29 -51.93 -0.33 0.29 16 30 H 0.07 0.54 6.41 -51.93 -0.33 0.21 16 31 H 0.39 5.96 6.51 -40.82 -0.27 5.69 16 32 H 0.10 2.49 6.48 -52.48 -0.34 2.15 16 33 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.12 3.25 6.17 -52.49 -0.32 2.93 16 35 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.06 0.53 7.60 -51.93 -0.39 0.14 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.48 8.09 -51.92 -0.42 0.06 16 45 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.08 0.98 8.12 -51.93 -0.42 0.55 16 47 H 0.03 0.33 6.63 -51.93 -0.34 -0.01 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -31.65 369.00 -10.95 -42.60 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -7.30 Total: 9.95 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -3.09 Total: -9.93 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -1.16 Total: -48.99 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.65 -10.95 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.024 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds