Wall clock time and date at job start Tue Mar 31 2020 11:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99648 * 2 1 4 4 O 1.21590 * 119.99786 * 179.97438 * 3 2 1 5 5 N 1.34774 * 120.00292 * 0.02562 * 3 2 1 6 6 C 1.39953 * 120.00055 * 174.85735 * 5 3 2 7 7 C 1.39282 * 119.94988 * 325.50436 * 6 5 3 8 8 C 1.38490 * 120.43282 * 179.76255 * 7 6 5 9 9 C 1.37686 * 120.31737 * 0.51239 * 8 7 6 10 10 C 1.40744 * 119.88366 * 359.74103 * 9 8 7 11 11 C 1.41408 * 120.21384 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00583 * 205.17145 * 11 10 9 13 13 C 1.39935 * 119.99270 * 25.16739 * 11 10 9 14 14 N 1.30829 * 120.00331 * 16.80871 * 13 11 10 15 15 Si 1.86801 * 119.99721 * 196.80104 * 13 11 10 16 16 H 1.48499 * 109.47328 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47371 * 120.00392 * 15 13 11 18 18 H 1.48511 * 109.47161 * 240.00504 * 15 13 11 19 19 C 1.38241 * 119.94396 * 145.77555 * 6 5 3 20 20 C 1.46498 * 120.00400 * 180.02562 * 2 1 3 21 21 H 1.08996 * 109.53743 * 180.09814 * 20 2 1 22 22 C 1.53127 * 109.49242 * 300.19806 * 20 2 1 23 23 C 1.53116 * 109.15145 * 177.60349 * 22 20 2 24 24 C 1.53035 * 109.28311 * 302.33999 * 23 22 20 25 25 N 1.46849 * 109.52244 * 59.17995 * 24 23 22 26 26 C 1.46895 * 111.00279 * 174.16233 * 25 24 23 27 27 C 1.46853 * 111.19648 * 298.25911 * 25 24 23 28 28 H 1.08999 * 109.46877 * 269.99247 * 1 2 3 29 29 H 1.08996 * 109.47470 * 29.99516 * 1 2 3 30 30 H 1.09002 * 109.47138 * 149.99828 * 1 2 3 31 31 H 0.97006 * 119.99836 * 354.86536 * 5 3 2 32 32 H 1.08004 * 119.78571 * 0.02562 * 7 6 5 33 33 H 1.07998 * 119.84171 * 180.23664 * 8 7 6 34 34 H 1.07994 * 120.05644 * 179.76869 * 9 8 7 35 35 H 0.96999 * 119.99862 * 179.97438 * 14 13 11 36 36 H 1.07993 * 120.16162 * 359.95914 * 19 6 5 37 37 H 1.08999 * 109.52640 * 57.70176 * 22 20 2 38 38 H 1.08994 * 109.57407 * 297.53783 * 22 20 2 39 39 H 1.08999 * 109.50196 * 182.39639 * 23 22 20 40 40 H 1.09006 * 109.53589 * 62.30498 * 23 22 20 41 41 H 1.08994 * 109.46313 * 299.16551 * 24 23 22 42 42 H 1.09001 * 109.46454 * 179.19605 * 24 23 22 43 43 H 1.08994 * 109.47664 * 184.20930 * 26 25 24 44 44 H 1.09008 * 109.47054 * 304.20935 * 26 25 24 45 45 H 1.09003 * 109.47249 * 64.20371 * 26 25 24 46 46 H 1.09000 * 109.45708 * 181.75496 * 27 25 24 47 47 H 1.08995 * 109.46169 * 301.73391 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4649 2.3344 0.0005 6 6 2.1605 3.5440 0.1092 7 6 3.3130 3.6159 0.8880 8 6 4.0118 4.8064 0.9986 9 6 3.5683 5.9357 0.3475 10 6 2.4024 5.8794 -0.4389 11 6 1.9410 7.0348 -1.1111 12 1 0.8954 7.1316 -1.3632 13 6 2.8395 8.0529 -1.4495 14 7 4.1261 7.8158 -1.4521 15 14 2.2017 9.7504 -1.8978 16 1 0.7189 9.7589 -1.8190 17 1 2.7530 10.7524 -0.9505 18 1 2.6264 10.0897 -3.2798 19 6 1.6994 4.6669 -0.5523 20 6 2.1976 -1.2687 -0.0006 21 1 3.2694 -1.0707 0.0013 22 6 1.8243 -2.0748 1.2467 23 6 2.5479 -3.4236 1.2082 24 6 2.1688 -4.1640 -0.0764 25 7 2.5466 -3.3522 -1.2404 26 6 2.3244 -4.0898 -2.4911 27 6 1.8283 -2.0714 -1.2501 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 0.4978 2.3361 -0.0743 32 1 3.6664 2.7364 1.4057 33 1 4.9064 4.8504 1.6020 34 1 4.1145 6.8628 0.4396 35 1 4.7488 8.5214 -1.6870 36 1 0.8039 4.6131 -1.1534 37 1 0.7470 -2.2397 1.2650 38 1 2.1240 -1.5260 2.1394 39 1 2.2533 -4.0194 2.0720 40 1 3.6254 -3.2600 1.2294 41 1 1.0933 -4.3401 -0.0902 42 1 2.6935 -5.1187 -0.1138 43 1 2.6816 -3.4953 -3.3320 44 1 2.8676 -5.0344 -2.4573 45 1 1.2593 -4.2874 -2.6122 46 1 2.1058 -1.5062 -2.1399 47 1 0.7544 -2.2573 -1.2582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931687532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:34 Heat of formation + Delta-G solvation = -14.187657 kcal Electronic energy + Delta-G solvation = -26521.288193 eV Core-core repulsion = 22896.046001 eV Total energy + Delta-G solvation = -3625.242192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.79030 -40.10667 -39.00074 -36.64598 -36.17298 -34.91448 -33.84150 -31.75861 -31.27932 -29.57410 -27.88527 -27.62669 -27.15654 -24.46171 -23.84318 -22.91326 -22.61169 -21.12681 -20.35015 -19.57617 -19.00065 -17.66394 -17.24173 -16.94045 -16.62054 -16.32784 -16.20445 -15.93125 -15.53973 -15.27256 -14.85582 -14.68624 -14.66334 -14.30722 -14.16390 -13.99834 -13.60731 -13.57213 -13.27425 -13.18797 -12.95597 -12.88275 -12.73721 -12.64909 -12.38548 -12.21988 -11.90799 -11.82257 -11.60853 -11.55315 -11.45498 -11.20102 -11.06097 -10.73473 -9.76327 -9.40407 -9.27907 -8.72071 -8.57420 -6.34151 0.94769 0.98438 1.40802 1.50526 1.55063 1.57050 2.13290 2.23360 2.78150 2.86059 3.09130 3.72994 3.74052 3.77651 3.98773 4.07410 4.15776 4.28692 4.40978 4.47544 4.50947 4.55501 4.56885 4.65510 4.67763 4.73632 4.80649 4.84968 4.93479 5.01366 5.02115 5.03139 5.07224 5.13850 5.18340 5.22595 5.32799 5.36516 5.50255 5.73836 5.78048 5.98944 6.05391 6.09884 6.13515 6.17695 6.36235 6.69298 6.91808 6.94537 7.02923 7.53510 8.36777 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028154 B = 0.002500 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.293971 B =11199.159488 C =11384.104573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.620 5.620 3 C 0.697 3.303 4 O -0.617 6.617 5 N -0.671 5.671 6 C 0.182 3.818 7 C -0.238 4.238 8 C -0.097 4.097 9 C -0.197 4.197 10 C 0.096 3.904 11 C -0.494 4.494 12 H 0.082 0.918 13 C 0.032 3.968 14 N -0.828 5.828 15 Si 0.986 3.014 16 H -0.254 1.254 17 H -0.265 1.265 18 H -0.268 1.268 19 C -0.255 4.255 20 C 0.158 3.842 21 H 0.070 0.930 22 C -0.120 4.120 23 C -0.112 4.112 24 C 0.056 3.944 25 N -0.562 5.562 26 C 0.028 3.972 27 C 0.059 3.941 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.414 0.586 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.287 0.713 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.057 0.943 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 -21.211 1.832 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.357 5.357 3 C 0.399 3.601 4 O -0.496 6.496 5 N -0.320 5.320 6 C 0.088 3.912 7 C -0.260 4.260 8 C -0.116 4.116 9 C -0.217 4.217 10 C 0.093 3.907 11 C -0.524 4.524 12 H 0.100 0.900 13 C -0.182 4.182 14 N -0.454 5.454 15 Si 0.807 3.193 16 H -0.177 1.177 17 H -0.190 1.190 18 H -0.193 1.193 19 C -0.277 4.277 20 C 0.054 3.946 21 H 0.088 0.912 22 C -0.159 4.159 23 C -0.151 4.151 24 C -0.072 4.072 25 N -0.287 5.287 26 C -0.120 4.120 27 C -0.070 4.070 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.253 0.747 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.796 -21.091 1.816 22.924 hybrid contribution -0.912 0.828 -0.440 1.308 sum -9.709 -20.263 1.376 22.511 Atomic orbital electron populations 1.22026 0.77465 1.04442 1.03403 1.47068 1.07767 1.03368 1.77493 1.16096 0.85020 0.81208 0.77751 1.90908 1.13710 1.86422 1.58595 1.42553 1.10344 1.02864 1.76263 1.17234 0.93891 0.84137 0.95935 1.20420 1.00190 0.97569 1.07791 1.20787 0.98493 0.93019 0.99262 1.21298 1.00854 0.97757 1.01752 1.17745 0.91254 0.92156 0.89503 1.19823 0.96327 1.01781 1.34450 0.90011 1.26834 0.94371 1.04385 0.92652 1.69916 1.04186 1.35595 1.35696 0.85104 0.79861 0.75938 0.78428 1.17745 1.19011 1.19293 1.20821 1.06052 0.92494 1.08319 1.20898 0.96747 0.81242 0.95699 0.91203 1.21888 1.01726 0.96092 0.96192 1.21564 1.00519 0.95011 0.97962 1.22193 0.99288 0.96480 0.89215 1.61768 1.58479 1.04324 1.04175 1.22367 1.00075 0.98863 0.90664 1.22238 0.96819 0.90680 0.97234 0.90837 0.90753 0.88431 0.74673 0.88404 0.87473 0.87762 0.90190 0.87165 0.89803 0.92579 0.88705 0.92402 0.93524 0.89277 0.91986 0.89963 0.94589 0.92400 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 9.26 127.77 1.18 2.28 16 2 N -0.62 -16.35 2.77 -840.31 -2.32 -18.67 16 3 C 0.70 26.31 8.01 179.05 1.43 27.74 16 4 O -0.62 -29.57 13.42 -4.00 -0.05 -29.63 16 5 N -0.67 -24.90 5.21 -317.33 -1.65 -26.56 16 6 C 0.18 8.61 6.25 38.10 0.24 8.85 16 7 C -0.24 -12.09 8.66 22.58 0.20 -11.89 16 8 C -0.10 -5.01 10.02 22.20 0.22 -4.79 16 9 C -0.20 -10.97 8.69 22.75 0.20 -10.77 16 10 C 0.10 5.36 5.57 -21.31 -0.12 5.24 16 11 C -0.49 -26.80 9.05 23.46 0.21 -26.59 16 12 H 0.08 4.19 7.90 -2.91 -0.02 4.17 16 13 C 0.03 1.65 5.16 85.25 0.44 2.08 16 14 N -0.83 -44.67 10.94 21.82 0.24 -44.43 16 15 Si 0.99 38.42 29.59 68.60 2.03 40.45 16 16 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 17 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 19 C -0.25 -12.73 9.70 22.85 0.22 -12.51 16 20 C 0.16 3.91 2.69 45.05 0.12 4.03 16 21 H 0.07 2.35 6.90 -2.39 -0.02 2.34 16 22 C -0.12 -2.20 5.32 30.68 0.16 -2.03 16 23 C -0.11 -1.69 6.09 30.64 0.19 -1.51 16 24 C 0.06 0.76 5.46 86.32 0.47 1.23 16 25 N -0.56 -10.38 4.91 -922.59 -4.53 -14.91 16 26 C 0.03 0.40 9.59 127.69 1.22 1.62 16 27 C 0.06 1.21 4.74 86.33 0.41 1.62 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.12 6.29 -2.39 -0.02 1.11 16 30 H 0.10 1.08 6.41 -2.39 -0.02 1.06 16 31 H 0.41 11.84 6.51 -92.70 -0.60 11.24 16 32 H 0.10 5.00 6.48 -2.91 -0.02 4.98 16 33 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 34 H 0.10 6.00 6.17 -2.91 -0.02 5.98 16 35 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 36 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 37 H 0.08 1.16 7.60 -2.39 -0.02 1.14 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 44 H 0.08 0.95 8.09 -2.38 -0.02 0.93 16 45 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 47 H 0.06 0.89 6.63 -2.39 -0.02 0.88 16 Total: -1.00 -72.04 369.00 0.88 -71.16 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: 0.37 Total: 37.99 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 6.80 Total: -15.40 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -8.27 Total: -104.58 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.63 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -72.04 0.88 -71.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.975 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds