Wall clock time and date at job start Tue Mar 31 2020 11:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99990 * 2 1 4 4 C 1.50703 * 109.47123 * 270.00113 * 3 2 1 5 5 H 1.08000 * 120.00148 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99983 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99833 * 179.97438 * 6 4 3 8 8 Si 1.86793 * 119.99894 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.47416 * 90.00022 * 8 6 4 10 10 H 1.48499 * 109.47159 * 209.99744 * 8 6 4 11 11 H 1.48501 * 109.47153 * 329.99703 * 8 6 4 12 12 C 1.34781 * 119.99997 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99696 * 179.97438 * 12 2 1 14 14 C 1.50691 * 120.00036 * 359.97438 * 12 2 1 15 15 C 1.53002 * 109.47190 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.47111 * 179.97438 * 15 14 12 17 17 C 1.46902 * 110.99908 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.47194 * 324.06648 * 17 16 15 19 19 C 1.50695 * 109.47128 * 204.07129 * 17 16 15 20 20 C 1.38228 * 119.61617 * 325.27058 * 19 17 16 21 21 C 1.38630 * 119.16066 * 179.75677 * 20 19 17 22 22 C 1.38671 * 118.42024 * 0.51014 * 21 20 19 23 23 C 1.38178 * 119.16627 * 359.73285 * 22 21 20 24 24 N 1.31852 * 119.62127 * 145.54737 * 19 17 16 25 25 C 1.52998 * 109.47349 * 84.06543 * 17 16 15 26 26 C 1.53004 * 117.49707 * 116.25230 * 25 17 16 27 27 C 1.52996 * 117.49889 * 184.91272 * 25 17 16 28 28 H 1.08998 * 109.47027 * 269.99604 * 1 2 3 29 29 H 1.08993 * 109.47145 * 30.00002 * 1 2 3 30 30 H 1.08999 * 109.46855 * 149.99876 * 1 2 3 31 31 H 1.08996 * 109.47031 * 30.00213 * 3 2 1 32 32 H 1.08999 * 109.47235 * 150.00549 * 3 2 1 33 33 H 0.97005 * 119.99695 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47399 * 60.00423 * 14 12 2 35 35 H 1.09004 * 109.47542 * 300.00048 * 14 12 2 36 36 H 1.09007 * 109.46883 * 60.00235 * 15 14 12 37 37 H 1.08999 * 109.47276 * 300.00461 * 15 14 12 38 38 H 1.00896 * 110.99644 * 56.05134 * 16 15 14 39 39 H 1.07997 * 120.42186 * 359.97438 * 20 19 17 40 40 H 1.07997 * 120.79318 * 180.26306 * 21 20 19 41 41 H 1.07998 * 120.42207 * 179.70812 * 22 21 20 42 42 H 1.08000 * 119.62521 * 179.97438 * 23 22 21 43 43 H 1.09006 * 115.54560 * 330.58930 * 25 17 16 44 44 H 1.09000 * 117.49347 * 215.00885 * 26 25 17 45 45 H 1.09002 * 117.49683 * 0.02562 * 26 25 17 46 46 H 1.08991 * 117.50209 * 359.97438 * 27 25 17 47 47 H 1.09005 * 117.49637 * 144.98088 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.3455 3.2574 -2.9127 8 14 3.7329 3.9292 -0.2530 9 1 5.1065 3.5082 0.1229 10 1 3.7477 5.3560 -0.6644 11 1 2.8270 3.7592 0.9114 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6452 -4.9074 0.0001 17 6 2.5697 -6.0491 0.0007 18 1 3.4450 -5.8081 -0.6025 19 6 1.8777 -7.2561 -0.5782 20 6 0.5274 -7.4443 -0.3500 21 6 -0.1007 -8.5552 -0.8913 22 6 0.6584 -9.4450 -1.6362 23 6 2.0050 -9.1937 -1.8177 24 7 2.5684 -8.1234 -1.2919 25 6 3.0065 -6.3508 1.4356 26 6 2.6074 -7.7050 2.0255 27 6 4.0641 -7.4377 1.6383 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1384 0.5137 33 1 3.8224 4.0833 -3.0899 34 1 0.7585 -2.5299 -0.8903 35 1 0.7591 -2.5303 0.8897 36 1 3.0063 -3.5775 0.8895 37 1 3.0064 -3.5775 -0.8904 38 1 1.0086 -4.9577 -0.7811 39 1 -0.0319 -6.7330 0.2395 40 1 -1.1553 -8.7259 -0.7333 41 1 0.2031 -10.3236 -2.0688 42 1 2.6033 -9.8820 -2.3962 43 1 3.0286 -5.4948 2.1101 44 1 2.3671 -7.7398 3.0881 45 1 2.0340 -8.3810 1.3912 46 1 4.4484 -7.9380 0.7496 47 1 4.7823 -7.2966 2.4461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932380548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:13 Heat of formation + Delta-G solvation = 35.568945 kcal Electronic energy + Delta-G solvation = -25929.784977 eV Core-core repulsion = 22306.700394 eV Total energy + Delta-G solvation = -3623.084584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.86404 -39.14928 -37.94551 -35.60340 -34.84454 -32.80744 -32.60937 -32.11599 -30.19473 -28.33735 -26.33702 -25.68586 -24.01541 -23.19158 -23.03500 -22.36607 -21.46593 -19.99494 -18.42928 -17.20838 -16.96060 -16.72109 -16.40011 -16.17204 -15.95527 -15.52599 -15.26031 -14.89740 -14.22465 -14.18558 -14.07431 -13.59021 -13.43138 -13.36206 -13.01476 -12.59682 -12.37864 -12.30100 -12.14713 -11.97990 -11.70391 -11.63453 -11.54369 -11.29154 -11.12193 -10.85253 -10.51143 -10.45955 -10.18956 -10.15000 -10.13626 -9.67805 -9.54058 -9.25554 -9.00060 -8.61797 -8.58472 -7.68942 -6.08358 -4.07052 0.79336 0.99129 3.29684 3.34841 3.36438 3.37475 3.41585 3.49081 3.80287 4.00669 4.14726 4.40185 4.49525 4.54826 4.70182 4.79918 4.81956 4.91871 4.96851 5.07869 5.17097 5.22917 5.27610 5.33742 5.41597 5.46091 5.51509 5.54749 5.57778 5.77141 5.80125 5.80790 5.85845 5.89245 6.00147 6.06507 6.09017 6.10639 6.17886 6.40798 6.70705 6.83418 6.95516 7.16465 7.34773 7.61762 7.72107 8.26149 8.47562 8.93208 8.99956 9.52053 11.05121 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.002400 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.247243 B =11662.370334 C =11959.886733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.073 0.927 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.543 6.543 14 C -0.135 4.135 15 C 0.075 3.925 16 N -0.681 5.681 17 C 0.166 3.834 18 H 0.071 0.929 19 C 0.132 3.868 20 C -0.152 4.152 21 C -0.079 4.079 22 C -0.178 4.178 23 C 0.098 3.902 24 N -0.479 5.479 25 C -0.129 4.129 26 C -0.179 4.179 27 C -0.178 4.178 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.341 0.659 39 H 0.146 0.854 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.155 0.845 43 H 0.116 0.884 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 -25.429 7.458 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.091 0.909 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.421 6.421 14 C -0.176 4.176 15 C -0.054 4.054 16 N -0.313 5.313 17 C 0.056 3.944 18 H 0.089 0.911 19 C -0.006 4.006 20 C -0.172 4.172 21 C -0.105 4.105 22 C -0.197 4.197 23 C -0.059 4.059 24 N -0.188 5.188 25 C -0.148 4.148 26 C -0.216 4.216 27 C -0.215 4.215 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.172 0.828 43 H 0.134 0.866 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.116 0.884 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.688 -25.105 7.887 27.415 hybrid contribution -0.450 0.485 -0.320 0.735 sum -8.138 -24.620 7.567 27.012 Atomic orbital electron populations 1.21659 0.80927 1.02969 1.00460 1.47841 1.06295 1.07155 1.71805 1.19658 0.92483 0.80144 0.98314 1.21331 1.36960 1.07098 0.91286 0.90853 1.24869 0.95249 0.97382 0.95607 1.69901 1.41517 1.23588 1.18676 0.86832 0.80141 0.79700 0.82902 1.19891 1.21080 1.19058 1.20296 0.88052 0.85132 0.77170 1.90674 1.13991 1.87328 1.50079 1.21583 0.99263 0.92615 1.04100 1.21732 0.94895 0.86214 1.02594 1.60550 1.19631 1.01222 1.49873 1.19788 0.93890 0.86567 0.94155 0.91141 1.21143 0.91152 0.95086 0.93259 1.22047 0.95672 0.98770 1.00732 1.21638 1.00426 0.93517 0.94891 1.22150 0.95799 1.00961 1.00836 1.22731 0.92791 0.94016 0.96405 1.67458 1.39984 1.03000 1.08396 1.22158 1.03261 0.93334 0.96049 1.23025 0.98214 0.99260 1.01091 1.23009 0.92031 1.02977 1.03514 0.93624 0.90682 0.92073 0.95266 0.94557 0.92569 0.89540 0.88668 0.89848 0.93810 0.84016 0.83636 0.84807 0.84942 0.82823 0.86642 0.89043 0.89331 0.88385 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.24 59.85 0.61 1.87 16 2 N -0.60 -12.28 2.86 -182.96 -0.52 -12.80 16 3 C 0.21 5.30 4.23 -5.19 -0.02 5.28 16 4 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 5 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 6 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 8 Si 0.88 21.75 27.47 -169.99 -4.67 17.09 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 12 C 0.51 10.14 7.67 -10.99 -0.08 10.06 16 13 O -0.54 -13.26 15.56 5.55 0.09 -13.18 16 14 C -0.14 -1.86 4.51 -27.89 -0.13 -1.99 16 15 C 0.07 1.01 4.77 -3.82 -0.02 0.99 16 16 N -0.68 -7.28 5.56 -107.95 -0.60 -7.88 16 17 C 0.17 1.84 2.72 -68.87 -0.19 1.65 16 18 H 0.07 0.91 7.81 -51.93 -0.41 0.51 16 19 C 0.13 1.36 3.80 -82.59 -0.31 1.05 16 20 C -0.15 -1.31 7.96 -39.44 -0.31 -1.62 16 21 C -0.08 -0.56 10.18 -39.28 -0.40 -0.96 16 22 C -0.18 -1.23 10.11 -39.44 -0.40 -1.63 16 23 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 24 N -0.48 -5.24 10.27 -9.47 -0.10 -5.34 16 25 C -0.13 -1.36 5.80 -90.62 -0.53 -1.89 16 26 C -0.18 -1.71 9.55 -26.69 -0.25 -1.97 16 27 C -0.18 -1.78 10.12 -26.69 -0.27 -2.05 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 31 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 32 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.09 1.06 7.40 -51.93 -0.38 0.68 16 35 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 36 H 0.08 1.21 7.56 -51.93 -0.39 0.82 16 37 H 0.04 0.68 8.01 -51.93 -0.42 0.26 16 38 H 0.34 3.34 7.82 -39.29 -0.31 3.04 16 39 H 0.15 1.15 7.50 -52.49 -0.39 0.75 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.27 7.70 -51.93 -0.40 0.87 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.90 5.84 -51.93 -0.30 0.59 16 46 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -34.85 384.06 -9.63 -44.48 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.45 Total: 3.24 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.94 Total: -4.23 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.45 Total: -53.19 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.85 -9.63 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932380548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.047 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds