Wall clock time and date at job start Tue Mar 31 2020 11:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99990 * 2 1 4 4 C 1.50703 * 109.47123 * 270.00113 * 3 2 1 5 5 H 1.08000 * 120.00148 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99983 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99833 * 179.97438 * 6 4 3 8 8 Si 1.86793 * 119.99894 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.47416 * 90.00022 * 8 6 4 10 10 H 1.48499 * 109.47159 * 209.99744 * 8 6 4 11 11 H 1.48501 * 109.47153 * 329.99703 * 8 6 4 12 12 C 1.34781 * 119.99997 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99696 * 179.97438 * 12 2 1 14 14 C 1.50691 * 120.00036 * 359.97438 * 12 2 1 15 15 C 1.53002 * 109.47190 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.47111 * 179.97438 * 15 14 12 17 17 C 1.46902 * 110.99908 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.47194 * 324.06648 * 17 16 15 19 19 C 1.50695 * 109.47128 * 204.07129 * 17 16 15 20 20 C 1.38228 * 119.61617 * 325.27058 * 19 17 16 21 21 C 1.38630 * 119.16066 * 179.75677 * 20 19 17 22 22 C 1.38671 * 118.42024 * 0.51014 * 21 20 19 23 23 C 1.38178 * 119.16627 * 359.73285 * 22 21 20 24 24 N 1.31852 * 119.62127 * 145.54737 * 19 17 16 25 25 C 1.52998 * 109.47349 * 84.06543 * 17 16 15 26 26 C 1.53004 * 117.49707 * 116.25230 * 25 17 16 27 27 C 1.52996 * 117.49889 * 184.91272 * 25 17 16 28 28 H 1.08998 * 109.47027 * 269.99604 * 1 2 3 29 29 H 1.08993 * 109.47145 * 30.00002 * 1 2 3 30 30 H 1.08999 * 109.46855 * 149.99876 * 1 2 3 31 31 H 1.08996 * 109.47031 * 30.00213 * 3 2 1 32 32 H 1.08999 * 109.47235 * 150.00549 * 3 2 1 33 33 H 0.97005 * 119.99695 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47399 * 60.00423 * 14 12 2 35 35 H 1.09004 * 109.47542 * 300.00048 * 14 12 2 36 36 H 1.09007 * 109.46883 * 60.00235 * 15 14 12 37 37 H 1.08999 * 109.47276 * 300.00461 * 15 14 12 38 38 H 1.00896 * 110.99644 * 56.05134 * 16 15 14 39 39 H 1.07997 * 120.42186 * 359.97438 * 20 19 17 40 40 H 1.07997 * 120.79318 * 180.26306 * 21 20 19 41 41 H 1.07998 * 120.42207 * 179.70812 * 22 21 20 42 42 H 1.08000 * 119.62521 * 179.97438 * 23 22 21 43 43 H 1.09006 * 115.54560 * 330.58930 * 25 17 16 44 44 H 1.09000 * 117.49347 * 215.00885 * 26 25 17 45 45 H 1.09002 * 117.49683 * 0.02562 * 26 25 17 46 46 H 1.08991 * 117.50209 * 359.97438 * 27 25 17 47 47 H 1.09005 * 117.49637 * 144.98088 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.3455 3.2574 -2.9127 8 14 3.7329 3.9292 -0.2530 9 1 5.1065 3.5082 0.1229 10 1 3.7477 5.3560 -0.6644 11 1 2.8270 3.7592 0.9114 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6452 -4.9074 0.0001 17 6 2.5697 -6.0491 0.0007 18 1 3.4450 -5.8081 -0.6025 19 6 1.8777 -7.2561 -0.5782 20 6 0.5274 -7.4443 -0.3500 21 6 -0.1007 -8.5552 -0.8913 22 6 0.6584 -9.4450 -1.6362 23 6 2.0050 -9.1937 -1.8177 24 7 2.5684 -8.1234 -1.2919 25 6 3.0065 -6.3508 1.4356 26 6 2.6074 -7.7050 2.0255 27 6 4.0641 -7.4377 1.6383 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1384 0.5137 33 1 3.8224 4.0833 -3.0899 34 1 0.7585 -2.5299 -0.8903 35 1 0.7591 -2.5303 0.8897 36 1 3.0063 -3.5775 0.8895 37 1 3.0064 -3.5775 -0.8904 38 1 1.0086 -4.9577 -0.7811 39 1 -0.0319 -6.7330 0.2395 40 1 -1.1553 -8.7259 -0.7333 41 1 0.2031 -10.3236 -2.0688 42 1 2.6033 -9.8820 -2.3962 43 1 3.0286 -5.4948 2.1101 44 1 2.3671 -7.7398 3.0881 45 1 2.0340 -8.3810 1.3912 46 1 4.4484 -7.9380 0.7496 47 1 4.7823 -7.2966 2.4461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932380548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:12 Heat of formation + Delta-G solvation = 11.469757 kcal Electronic energy + Delta-G solvation = -25930.829997 eV Core-core repulsion = 22306.700394 eV Total energy + Delta-G solvation = -3624.129603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55300 -40.70049 -38.76535 -36.79860 -36.33400 -34.71704 -33.42967 -33.07326 -31.36010 -29.99652 -27.46499 -26.96753 -25.00359 -24.34315 -23.88666 -23.16598 -22.88196 -20.80438 -19.94111 -19.15892 -17.98782 -17.91625 -17.22261 -17.13725 -17.02484 -16.86131 -16.41961 -16.10878 -15.79178 -15.10984 -15.04064 -14.79713 -14.48003 -14.32559 -14.28177 -13.88418 -13.74224 -13.63021 -13.43396 -13.29852 -13.03873 -12.80796 -12.54775 -12.41982 -12.35583 -12.28742 -12.18636 -11.98606 -11.75591 -11.27183 -11.00040 -10.84512 -10.76852 -10.65930 -10.33503 -9.88283 -9.59988 -9.37440 -8.35416 -6.40487 0.17529 0.40500 1.31855 1.36269 1.44716 1.82094 2.25917 2.30270 2.71143 2.85431 2.99205 3.11803 3.33634 3.77376 3.87913 3.89650 3.99924 4.07157 4.08478 4.10968 4.20802 4.28751 4.35250 4.43296 4.53995 4.58915 4.65865 4.69269 4.70156 4.75330 4.84707 4.90121 4.91603 4.96765 4.99754 5.01767 5.02517 5.22147 5.23539 5.27673 5.33446 5.45328 5.62933 5.79445 5.86475 6.22826 6.28880 6.60792 6.71989 7.08071 7.20579 7.43815 8.81708 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.002400 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.247243 B =11662.370334 C =11959.886733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.222 3.778 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.008 3.992 7 N -0.947 5.947 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.236 1.236 12 C 0.495 3.505 13 O -0.600 6.600 14 C -0.116 4.116 15 C 0.084 3.916 16 N -0.660 5.660 17 C 0.169 3.831 18 H 0.040 0.960 19 C 0.114 3.886 20 C -0.155 4.155 21 C -0.078 4.078 22 C -0.170 4.170 23 C 0.081 3.919 24 N -0.512 5.512 25 C -0.138 4.138 26 C -0.162 4.162 27 C -0.182 4.182 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.017 0.983 33 H 0.268 0.732 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.013 0.987 38 H 0.349 0.651 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.984 -26.813 9.487 30.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.340 5.340 3 C 0.099 3.901 4 C -0.575 4.575 5 H 0.045 0.955 6 C -0.189 4.189 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.159 1.159 12 C 0.284 3.716 13 O -0.481 6.481 14 C -0.156 4.156 15 C -0.045 4.045 16 N -0.292 5.292 17 C 0.058 3.942 18 H 0.058 0.942 19 C -0.024 4.024 20 C -0.174 4.174 21 C -0.103 4.103 22 C -0.189 4.189 23 C -0.076 4.076 24 N -0.222 5.222 25 C -0.157 4.157 26 C -0.199 4.199 27 C -0.219 4.219 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.088 0.912 37 H 0.031 0.969 38 H 0.169 0.831 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.188 0.812 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.527 -26.514 9.923 30.204 hybrid contribution 0.386 0.792 -1.074 1.389 sum -10.141 -25.722 8.849 29.030 Atomic orbital electron populations 1.21993 0.77384 1.04061 1.03091 1.47984 1.08587 1.05901 1.71486 1.19332 0.92786 0.82798 0.95187 1.21577 1.36758 1.06663 0.92463 0.95462 1.25890 0.95319 0.99032 0.98694 1.70055 1.42772 1.24533 1.21340 0.85689 0.79530 0.77717 0.79858 1.20321 1.19925 1.15921 1.21395 0.87802 0.86827 0.75576 1.90643 1.16752 1.88260 1.52492 1.21513 0.98758 0.88580 1.06738 1.21514 0.94723 0.87713 1.00589 1.60523 1.18876 0.99863 1.49970 1.19675 0.93021 0.87264 0.94194 0.94172 1.20980 0.91982 0.94983 0.94439 1.22141 0.94797 0.99612 1.00894 1.22020 1.01820 0.92597 0.93897 1.22494 0.95024 1.01607 0.99808 1.23137 0.94105 0.93731 0.96591 1.67380 1.41278 1.04145 1.09424 1.22114 1.04169 0.93658 0.95752 1.23008 0.97321 0.97944 1.01611 1.23007 0.92687 1.02818 1.03396 0.90043 0.91829 0.88901 0.93092 0.96473 0.92265 0.87219 0.85134 0.91167 0.96901 0.83131 0.82870 0.81880 0.81978 0.81242 0.87188 0.87676 0.89615 0.89600 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.08 10.24 127.77 1.31 3.39 16 2 N -0.61 -24.42 2.86 -851.15 -2.43 -26.85 16 3 C 0.22 10.90 4.23 85.63 0.36 11.26 16 4 C -0.54 -32.01 9.94 25.60 0.25 -31.76 16 5 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 6 C 0.01 0.50 5.47 84.66 0.46 0.97 16 7 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 8 Si 0.95 45.03 27.47 68.60 1.88 46.91 16 9 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 12 C 0.49 19.76 7.67 87.65 0.67 20.43 16 13 O -0.60 -30.43 15.56 -3.04 -0.05 -30.48 16 14 C -0.12 -2.99 4.51 29.85 0.13 -2.85 16 15 C 0.08 2.30 4.77 86.30 0.41 2.71 16 16 N -0.66 -13.64 5.56 -495.44 -2.76 -16.39 16 17 C 0.17 3.83 2.72 44.17 0.12 3.95 16 18 H 0.04 1.14 7.81 -2.39 -0.02 1.12 16 19 C 0.11 2.31 3.80 42.55 0.16 2.47 16 20 C -0.15 -2.34 7.96 22.36 0.18 -2.17 16 21 C -0.08 -0.86 10.18 22.47 0.23 -0.64 16 22 C -0.17 -1.89 10.11 22.36 0.23 -1.66 16 23 C 0.08 1.28 11.18 84.67 0.95 2.23 16 24 N -0.51 -11.23 10.27 -183.89 -1.89 -13.11 16 25 C -0.14 -2.92 5.80 -10.79 -0.06 -2.98 16 26 C -0.16 -2.93 9.55 30.62 0.29 -2.64 16 27 C -0.18 -3.67 10.12 30.62 0.31 -3.36 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 30 H 0.09 1.92 6.44 -2.39 -0.02 1.90 16 31 H 0.05 2.28 7.13 -2.39 -0.02 2.27 16 32 H 0.02 0.91 6.85 -2.39 -0.02 0.89 16 33 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 34 H 0.11 2.38 7.40 -2.39 -0.02 2.36 16 35 H 0.13 2.53 8.11 -2.38 -0.02 2.51 16 36 H 0.07 2.10 7.56 -2.38 -0.02 2.08 16 37 H 0.01 0.42 8.01 -2.39 -0.02 0.40 16 38 H 0.35 6.35 7.82 -89.70 -0.70 5.65 16 39 H 0.15 2.01 7.50 -2.91 -0.02 1.99 16 40 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 42 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.11 2.43 7.70 -2.38 -0.02 2.41 16 44 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.09 1.63 5.84 -2.39 -0.01 1.62 16 46 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 47 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -81.41 384.06 1.27 -80.14 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.21 Total: 20.86 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 6.01 Total: -0.65 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -6.78 Total: -116.79 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.05 Total: -30.48 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -81.41 1.27 -80.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932380548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.607 kcal (2) G-P(sol) polarization free energy of solvation -81.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds