Wall clock time and date at job start Tue Mar 31 2020 11:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.50699 * 109.47486 * 270.00012 * 3 2 1 5 5 H 1.08003 * 119.99689 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00199 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99872 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99960 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47150 * 90.00134 * 8 6 4 10 10 H 1.48506 * 109.47060 * 209.99923 * 8 6 4 11 11 H 1.48501 * 109.47130 * 330.00098 * 8 6 4 12 12 C 1.34776 * 120.00008 * 180.02562 * 2 1 3 13 13 O 1.21275 * 119.99885 * 179.97438 * 12 2 1 14 14 C 1.50706 * 119.99786 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.46963 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47272 * 180.02562 * 15 14 12 17 17 C 1.46901 * 111.00056 * 179.97438 * 16 15 14 18 18 H 1.09001 * 109.47012 * 35.00245 * 17 16 15 19 19 C 1.50701 * 109.46902 * 154.99701 * 17 16 15 20 20 C 1.38221 * 119.61840 * 241.84450 * 19 17 16 21 21 C 1.38631 * 119.16475 * 180.02562 * 20 19 17 22 22 C 1.38671 * 118.41540 * 0.02562 * 21 20 19 23 23 C 1.38177 * 119.16730 * 0.27768 * 22 21 20 24 24 N 1.31854 * 119.61859 * 61.87014 * 19 17 16 25 25 C 1.53001 * 109.47177 * 274.99796 * 17 16 15 26 26 C 1.53001 * 117.49900 * 10.13123 * 25 17 16 27 27 C 1.52994 * 117.49998 * 301.47029 * 25 17 16 28 28 H 1.09003 * 109.47702 * 269.99849 * 1 2 3 29 29 H 1.09001 * 109.47313 * 29.99927 * 1 2 3 30 30 H 1.08998 * 109.47581 * 149.99826 * 1 2 3 31 31 H 1.09000 * 109.47102 * 30.00253 * 3 2 1 32 32 H 1.09006 * 109.47026 * 150.00138 * 3 2 1 33 33 H 0.96999 * 119.99614 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47217 * 60.00040 * 14 12 2 35 35 H 1.09004 * 109.46882 * 299.99683 * 14 12 2 36 36 H 1.08998 * 109.47480 * 59.99207 * 15 14 12 37 37 H 1.09002 * 109.47246 * 299.99991 * 15 14 12 38 38 H 1.00900 * 111.00310 * 56.04197 * 16 15 14 39 39 H 1.08001 * 120.42231 * 0.02562 * 20 19 17 40 40 H 1.07992 * 120.79579 * 180.02562 * 21 20 19 41 41 H 1.08001 * 120.41913 * 179.97438 * 22 21 20 42 42 H 1.08007 * 119.62159 * 179.70488 * 23 22 21 43 43 H 1.09002 * 115.54952 * 155.80101 * 25 17 16 44 44 H 1.08997 * 117.49367 * 359.97438 * 26 25 17 45 45 H 1.08998 * 117.49874 * 145.02217 * 26 25 17 46 46 H 1.09000 * 117.49954 * 214.98171 * 27 25 17 47 47 H 1.09001 * 117.49749 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3456 3.2574 -2.9127 8 14 3.7337 3.9287 -0.2528 9 1 5.1068 3.5069 0.1238 10 1 3.7497 5.3554 -0.6647 11 1 2.8271 3.7596 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6352 -0.0014 16 7 1.6450 -4.9074 -0.0032 17 6 2.5695 -6.0490 -0.0036 18 1 3.4519 -5.8022 0.5867 19 6 1.8845 -7.2503 0.5953 20 6 2.3908 -7.8216 1.7476 21 6 1.7535 -8.9267 2.2901 22 6 0.6259 -9.4184 1.6501 23 6 0.1815 -8.7987 0.4978 24 7 0.8093 -7.7446 0.0137 25 6 2.9892 -6.3649 -1.4406 26 6 2.6056 -5.3574 -2.5263 27 6 1.8828 -6.7041 -2.4414 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6083 2.0283 0.5139 32 1 3.1499 1.1384 0.5138 33 1 3.8230 4.0830 -3.0898 34 1 0.7590 -2.5295 -0.8919 35 1 0.7583 -2.5306 0.8881 36 1 3.0056 -3.5779 0.8889 37 1 3.0069 -3.5771 -0.8909 38 1 1.0094 -4.9570 -0.7852 39 1 3.2718 -7.4122 2.2194 40 1 2.1262 -9.3936 3.1898 41 1 0.1044 -10.2781 2.0445 42 1 -0.6932 -9.1785 -0.0093 43 1 3.9420 -6.8832 -1.5490 44 1 2.0538 -4.4698 -2.2168 45 1 3.3057 -5.2132 -3.3491 46 1 2.1077 -7.4452 -3.2083 47 1 0.8558 -6.7026 -2.0759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932380550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:17 Heat of formation + Delta-G solvation = 39.269245 kcal Electronic energy + Delta-G solvation = -26146.585457 eV Core-core repulsion = 22523.661330 eV Total energy + Delta-G solvation = -3622.924127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66548 -39.22236 -38.43103 -35.02499 -34.47143 -32.75590 -32.55621 -32.27448 -30.14932 -28.32347 -26.55319 -25.73662 -23.84718 -23.16399 -22.85619 -22.29099 -21.42749 -19.97040 -18.36736 -17.27637 -16.95389 -16.83074 -16.41667 -16.16238 -15.84202 -15.27923 -15.24668 -14.93515 -14.28353 -14.19277 -13.83616 -13.60829 -13.35327 -13.17973 -12.64596 -12.54958 -12.34848 -12.26718 -12.04552 -11.92759 -11.89658 -11.68479 -11.49156 -11.23740 -11.05903 -10.82811 -10.50047 -10.43785 -10.18768 -10.12878 -10.02562 -9.53291 -9.51832 -9.22336 -8.97735 -8.57709 -8.48718 -7.67374 -6.07596 -4.06146 0.90026 1.08516 3.30161 3.36080 3.37900 3.38668 3.49564 3.64178 3.83209 4.16342 4.27446 4.40802 4.53363 4.61887 4.69357 4.80592 4.87775 4.91512 5.00659 5.08306 5.16159 5.24491 5.26676 5.35918 5.39736 5.50853 5.52848 5.61458 5.66800 5.82940 5.83577 5.88083 5.92917 5.95536 5.97406 6.10478 6.17209 6.18718 6.20092 6.49401 6.71942 6.91665 6.96390 7.30310 7.36280 7.62618 7.84302 8.27783 8.48529 8.94234 9.01431 9.52886 11.05836 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.002494 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.232497 B =11223.675973 C =11580.142333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.543 6.543 14 C -0.136 4.136 15 C 0.069 3.931 16 N -0.679 5.679 17 C 0.167 3.833 18 H 0.097 0.903 19 C 0.158 3.842 20 C -0.165 4.165 21 C -0.076 4.076 22 C -0.182 4.182 23 C 0.099 3.901 24 N -0.466 5.466 25 C -0.184 4.184 26 C -0.186 4.186 27 C -0.162 4.162 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.347 0.653 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.153 0.847 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -25.305 8.531 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.295 3.705 13 O -0.421 6.421 14 C -0.177 4.177 15 C -0.060 4.060 16 N -0.311 5.311 17 C 0.056 3.944 18 H 0.115 0.885 19 C 0.019 3.981 20 C -0.185 4.185 21 C -0.102 4.102 22 C -0.202 4.202 23 C -0.059 4.059 24 N -0.175 5.175 25 C -0.204 4.204 26 C -0.223 4.223 27 C -0.199 4.199 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.170 0.830 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.805 -24.714 8.350 26.959 hybrid contribution 0.910 0.221 0.441 1.035 sum -5.894 -24.493 8.791 26.682 Atomic orbital electron populations 1.21662 0.80926 1.02991 1.00464 1.47834 1.06293 1.07149 1.71798 1.19657 0.92465 0.80160 0.98319 1.21329 1.36864 1.07112 0.91282 0.90828 1.24869 0.95278 0.97371 0.95592 1.69903 1.41525 1.23596 1.18650 0.86836 0.80114 0.79712 0.82935 1.19922 1.21087 1.19067 1.20289 0.88032 0.85109 0.77118 1.90663 1.13978 1.87337 1.50143 1.21590 0.99317 0.92689 1.04058 1.21817 0.95081 0.86403 1.02715 1.60543 1.19129 1.00830 1.50602 1.19899 0.93755 0.87446 0.93297 0.88515 1.21021 0.91315 0.94515 0.91226 1.21956 1.01917 0.97495 0.97161 1.21537 0.94549 0.95073 0.99013 1.22100 0.98212 1.02020 0.97854 1.22753 0.98343 0.91468 0.93290 1.67444 1.07396 1.10663 1.31992 1.22896 1.00373 1.05378 0.91754 1.23228 1.04326 0.94076 1.00678 1.23022 0.98442 0.97779 1.00653 0.93653 0.90663 0.92048 0.95290 0.94583 0.92589 0.89588 0.88823 0.90185 0.93094 0.83225 0.84951 0.85078 0.85169 0.83015 0.87921 0.88232 0.88642 0.89531 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.24 59.84 0.61 1.90 16 2 N -0.60 -12.43 2.86 -182.96 -0.52 -12.95 16 3 C 0.21 5.32 4.23 -5.20 -0.02 5.30 16 4 C -0.53 -15.31 9.94 -34.44 -0.34 -15.65 16 5 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 6 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 8 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 12 C 0.51 10.28 7.67 -10.98 -0.08 10.20 16 13 O -0.54 -13.27 15.56 5.56 0.09 -13.18 16 14 C -0.14 -1.96 4.51 -27.88 -0.13 -2.09 16 15 C 0.07 0.95 4.00 -3.83 -0.02 0.93 16 16 N -0.68 -7.93 6.05 -107.95 -0.65 -8.58 16 17 C 0.17 1.80 2.77 -68.86 -0.19 1.61 16 18 H 0.10 1.01 7.52 -51.93 -0.39 0.62 16 19 C 0.16 1.65 5.73 -82.59 -0.47 1.17 16 20 C -0.16 -1.47 9.71 -39.44 -0.38 -1.85 16 21 C -0.08 -0.57 10.18 -39.28 -0.40 -0.97 16 22 C -0.18 -1.30 10.11 -39.44 -0.40 -1.70 16 23 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 24 N -0.47 -4.87 8.05 -9.47 -0.08 -4.94 16 25 C -0.18 -1.94 5.79 -90.62 -0.52 -2.47 16 26 C -0.19 -2.09 8.70 -26.69 -0.23 -2.32 16 27 C -0.16 -1.66 8.94 -26.70 -0.24 -1.90 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 31 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 32 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.09 1.12 7.40 -51.93 -0.38 0.74 16 35 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 36 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 37 H 0.05 0.78 6.16 -51.93 -0.32 0.46 16 38 H 0.35 4.00 6.07 -39.29 -0.24 3.77 16 39 H 0.13 0.97 7.94 -52.49 -0.42 0.55 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.10 1.21 4.92 -51.93 -0.26 0.95 16 45 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.11 1.21 6.42 -51.93 -0.33 0.88 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -34.69 378.02 -9.68 -44.37 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.20 Total: 4.82 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -3.11 Total: -5.20 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.48 Total: -53.61 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.69 -9.68 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932380550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.643 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds