Wall clock time and date at job start Tue Mar 31 2020 11:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.50699 * 109.47486 * 270.00012 * 3 2 1 5 5 H 1.08003 * 119.99689 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00199 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99872 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99960 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47150 * 90.00134 * 8 6 4 10 10 H 1.48506 * 109.47060 * 209.99923 * 8 6 4 11 11 H 1.48501 * 109.47130 * 330.00098 * 8 6 4 12 12 C 1.34776 * 120.00008 * 180.02562 * 2 1 3 13 13 O 1.21275 * 119.99885 * 179.97438 * 12 2 1 14 14 C 1.50706 * 119.99786 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.46963 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.47272 * 180.02562 * 15 14 12 17 17 C 1.46901 * 111.00056 * 179.97438 * 16 15 14 18 18 H 1.09001 * 109.47012 * 35.00245 * 17 16 15 19 19 C 1.50701 * 109.46902 * 154.99701 * 17 16 15 20 20 C 1.38221 * 119.61840 * 241.84450 * 19 17 16 21 21 C 1.38631 * 119.16475 * 180.02562 * 20 19 17 22 22 C 1.38671 * 118.41540 * 0.02562 * 21 20 19 23 23 C 1.38177 * 119.16730 * 0.27768 * 22 21 20 24 24 N 1.31854 * 119.61859 * 61.87014 * 19 17 16 25 25 C 1.53001 * 109.47177 * 274.99796 * 17 16 15 26 26 C 1.53001 * 117.49900 * 10.13123 * 25 17 16 27 27 C 1.52994 * 117.49998 * 301.47029 * 25 17 16 28 28 H 1.09003 * 109.47702 * 269.99849 * 1 2 3 29 29 H 1.09001 * 109.47313 * 29.99927 * 1 2 3 30 30 H 1.08998 * 109.47581 * 149.99826 * 1 2 3 31 31 H 1.09000 * 109.47102 * 30.00253 * 3 2 1 32 32 H 1.09006 * 109.47026 * 150.00138 * 3 2 1 33 33 H 0.96999 * 119.99614 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47217 * 60.00040 * 14 12 2 35 35 H 1.09004 * 109.46882 * 299.99683 * 14 12 2 36 36 H 1.08998 * 109.47480 * 59.99207 * 15 14 12 37 37 H 1.09002 * 109.47246 * 299.99991 * 15 14 12 38 38 H 1.00900 * 111.00310 * 56.04197 * 16 15 14 39 39 H 1.08001 * 120.42231 * 0.02562 * 20 19 17 40 40 H 1.07992 * 120.79579 * 180.02562 * 21 20 19 41 41 H 1.08001 * 120.41913 * 179.97438 * 22 21 20 42 42 H 1.08007 * 119.62159 * 179.70488 * 23 22 21 43 43 H 1.09002 * 115.54952 * 155.80101 * 25 17 16 44 44 H 1.08997 * 117.49367 * 359.97438 * 26 25 17 45 45 H 1.08998 * 117.49874 * 145.02217 * 26 25 17 46 46 H 1.09000 * 117.49954 * 214.98171 * 27 25 17 47 47 H 1.09001 * 117.49749 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3456 3.2574 -2.9127 8 14 3.7337 3.9287 -0.2528 9 1 5.1068 3.5069 0.1238 10 1 3.7497 5.3554 -0.6647 11 1 2.8271 3.7596 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6352 -0.0014 16 7 1.6450 -4.9074 -0.0032 17 6 2.5695 -6.0490 -0.0036 18 1 3.4519 -5.8022 0.5867 19 6 1.8845 -7.2503 0.5953 20 6 2.3908 -7.8216 1.7476 21 6 1.7535 -8.9267 2.2901 22 6 0.6259 -9.4184 1.6501 23 6 0.1815 -8.7987 0.4978 24 7 0.8093 -7.7446 0.0137 25 6 2.9892 -6.3649 -1.4406 26 6 2.6056 -5.3574 -2.5263 27 6 1.8828 -6.7041 -2.4414 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6083 2.0283 0.5139 32 1 3.1499 1.1384 0.5138 33 1 3.8230 4.0830 -3.0898 34 1 0.7590 -2.5295 -0.8919 35 1 0.7583 -2.5306 0.8881 36 1 3.0056 -3.5779 0.8889 37 1 3.0069 -3.5771 -0.8909 38 1 1.0094 -4.9570 -0.7852 39 1 3.2718 -7.4122 2.2194 40 1 2.1262 -9.3936 3.1898 41 1 0.1044 -10.2781 2.0445 42 1 -0.6932 -9.1785 -0.0093 43 1 3.9420 -6.8832 -1.5490 44 1 2.0538 -4.4698 -2.2168 45 1 3.3057 -5.2132 -3.3491 46 1 2.1077 -7.4452 -3.2083 47 1 0.8558 -6.7026 -2.0759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932380550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:16 Heat of formation + Delta-G solvation = 16.079073 kcal Electronic energy + Delta-G solvation = -26147.591058 eV Core-core repulsion = 22523.661330 eV Total energy + Delta-G solvation = -3623.929728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38435 -40.70024 -39.35829 -36.67919 -35.58012 -34.69469 -33.41237 -33.06836 -31.40989 -29.96714 -27.58562 -27.13534 -24.92814 -24.32289 -23.61518 -23.18367 -22.85842 -20.82331 -19.89215 -19.15371 -18.15923 -17.85904 -17.47998 -17.15784 -16.93257 -16.52839 -16.39915 -16.00592 -15.94517 -15.18131 -14.82369 -14.75015 -14.46186 -14.37407 -14.01042 -13.77183 -13.63979 -13.55206 -13.42960 -13.22520 -12.95335 -12.76063 -12.71664 -12.53406 -12.42841 -12.27330 -12.09663 -11.97825 -11.75077 -11.29317 -11.00235 -10.83765 -10.67314 -10.65273 -10.18961 -9.85869 -9.44821 -9.37549 -8.34625 -6.39676 0.27733 0.49623 1.32325 1.36414 1.45062 1.81308 2.29221 2.30918 2.78787 2.90096 2.99765 3.29031 3.50791 3.71756 3.81778 3.87108 3.99088 4.06312 4.14170 4.17308 4.23352 4.26284 4.35663 4.41362 4.46431 4.61245 4.64718 4.67682 4.75688 4.83355 4.83583 4.90354 4.93937 4.97053 4.99727 5.00767 5.02197 5.15026 5.33758 5.34844 5.38429 5.45476 5.62454 5.87698 5.95746 6.23378 6.34859 6.61393 6.70964 7.20354 7.21038 7.42923 8.82375 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.002494 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.232497 B =11223.675973 C =11580.142333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.222 3.778 4 C -0.535 4.535 5 H 0.027 0.973 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.238 1.238 12 C 0.498 3.502 13 O -0.596 6.596 14 C -0.119 4.119 15 C 0.079 3.921 16 N -0.669 5.669 17 C 0.167 3.833 18 H 0.095 0.905 19 C 0.137 3.863 20 C -0.176 4.176 21 C -0.079 4.079 22 C -0.176 4.176 23 C 0.084 3.916 24 N -0.486 5.486 25 C -0.183 4.183 26 C -0.198 4.198 27 C -0.148 4.148 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.018 0.982 33 H 0.268 0.732 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.348 0.652 39 H 0.141 0.859 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.173 0.827 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 -26.827 11.002 30.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.340 5.340 3 C 0.099 3.901 4 C -0.574 4.574 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.200 1.200 11 H -0.161 1.161 12 C 0.287 3.713 13 O -0.477 6.477 14 C -0.159 4.159 15 C -0.050 4.050 16 N -0.301 5.301 17 C 0.056 3.944 18 H 0.113 0.887 19 C -0.001 4.001 20 C -0.197 4.197 21 C -0.105 4.105 22 C -0.196 4.196 23 C -0.073 4.073 24 N -0.196 5.196 25 C -0.203 4.203 26 C -0.235 4.235 27 C -0.185 4.185 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.170 0.830 39 H 0.159 0.841 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.190 0.810 43 H 0.124 0.876 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.519 -26.261 10.829 29.657 hybrid contribution 1.378 0.570 -0.395 1.542 sum -7.142 -25.692 10.435 28.635 Atomic orbital electron populations 1.21974 0.77578 1.03987 1.02973 1.47974 1.08480 1.05980 1.71531 1.19339 0.92767 0.82691 0.95275 1.21558 1.36712 1.06711 0.92396 0.95438 1.25882 0.95338 0.98993 0.98685 1.70057 1.42730 1.24525 1.21292 0.85691 0.79544 0.77722 0.79840 1.20219 1.19957 1.16061 1.21296 0.87792 0.86647 0.75590 1.90631 1.16511 1.88205 1.52383 1.21518 0.98985 0.89234 1.06153 1.21606 0.94752 0.87436 1.01206 1.60539 1.18948 1.00136 1.50518 1.19908 0.93686 0.87482 0.93315 0.88692 1.20930 0.92109 0.94843 0.92230 1.22155 1.02469 0.98153 0.96895 1.21899 0.94408 0.94460 0.99713 1.22447 0.97832 1.02283 0.97035 1.23201 0.98921 0.91145 0.94049 1.67385 1.07727 1.11716 1.32723 1.22930 1.00745 1.04854 0.91760 1.23184 1.04858 0.94297 1.01181 1.22979 0.98162 0.96914 1.00400 0.90212 0.91678 0.89193 0.93193 0.96363 0.92277 0.87699 0.86003 0.91283 0.95248 0.83042 0.84078 0.82553 0.82358 0.81040 0.87572 0.89240 0.89085 0.88796 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.19 10.24 127.77 1.31 3.50 16 2 N -0.61 -24.86 2.86 -851.14 -2.43 -27.29 16 3 C 0.22 10.97 4.23 85.63 0.36 11.33 16 4 C -0.54 -31.97 9.94 25.60 0.25 -31.72 16 5 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 6 C 0.01 0.53 5.47 84.65 0.46 0.99 16 7 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 8 Si 0.95 45.00 27.47 68.60 1.88 46.89 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 12 C 0.50 20.15 7.67 87.66 0.67 20.82 16 13 O -0.60 -30.03 15.56 -3.01 -0.05 -30.08 16 14 C -0.12 -3.27 4.51 29.85 0.13 -3.14 16 15 C 0.08 2.19 4.00 86.30 0.35 2.53 16 16 N -0.67 -15.18 6.05 -495.46 -3.00 -18.17 16 17 C 0.17 3.54 2.77 44.17 0.12 3.67 16 18 H 0.10 2.00 7.52 -2.39 -0.02 1.98 16 19 C 0.14 2.72 5.73 42.55 0.24 2.96 16 20 C -0.18 -2.89 9.71 22.36 0.22 -2.67 16 21 C -0.08 -0.98 10.18 22.47 0.23 -0.75 16 22 C -0.18 -2.02 10.11 22.36 0.23 -1.79 16 23 C 0.08 1.23 11.18 84.67 0.95 2.18 16 24 N -0.49 -9.49 8.05 -183.88 -1.48 -10.97 16 25 C -0.18 -3.87 5.79 -10.80 -0.06 -3.93 16 26 C -0.20 -4.55 8.70 30.62 0.27 -4.28 16 27 C -0.15 -2.96 8.94 30.62 0.27 -2.69 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.09 2.04 6.44 -2.39 -0.02 2.02 16 31 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 32 H 0.02 0.97 6.85 -2.38 -0.02 0.95 16 33 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.10 2.53 7.40 -2.39 -0.02 2.51 16 35 H 0.12 2.73 8.11 -2.38 -0.02 2.71 16 36 H 0.07 2.05 8.01 -2.39 -0.02 2.04 16 37 H 0.03 0.94 6.16 -2.39 -0.01 0.92 16 38 H 0.35 7.76 6.07 -89.69 -0.54 7.21 16 39 H 0.14 1.91 7.94 -2.91 -0.02 1.89 16 40 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 42 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.09 2.23 4.92 -2.39 -0.01 2.22 16 45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.11 2.31 6.42 -2.39 -0.02 2.29 16 Total: -1.00 -78.99 378.02 1.60 -77.38 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.37 Total: 25.46 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.00 Total: -2.98 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -6.61 Total: -116.67 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.05 Total: -30.08 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.89 kcal Total: -78.99 1.60 -77.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932380550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.464 kcal (2) G-P(sol) polarization free energy of solvation -78.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds