Wall clock time and date at job start Tue Mar 31 2020 11:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 120.00082 * 2 1 4 4 C 1.50701 * 109.46430 * 269.99688 * 3 2 1 5 5 H 1.07996 * 120.00507 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99676 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00075 * 0.02562 * 6 4 3 8 8 Si 1.86792 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47361 * 89.99523 * 8 6 4 10 10 H 1.48502 * 109.47343 * 210.00037 * 8 6 4 11 11 H 1.48504 * 109.47001 * 330.00017 * 8 6 4 12 12 C 1.34774 * 120.00159 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00514 * 180.02562 * 12 2 1 14 14 C 1.50701 * 119.99757 * 0.02562 * 12 2 1 15 15 C 1.53001 * 109.46804 * 179.97438 * 14 12 2 16 16 N 1.46909 * 109.46958 * 179.97438 * 15 14 12 17 17 C 1.46901 * 110.99759 * 174.91240 * 16 15 14 18 18 H 1.08998 * 109.47432 * 326.39065 * 17 16 15 19 19 C 1.50699 * 109.46627 * 206.39262 * 17 16 15 20 20 C 1.38652 * 120.78951 * 140.00354 * 19 17 16 21 21 C 1.38205 * 119.16563 * 179.97438 * 20 19 17 22 22 N 1.31879 * 120.75977 * 0.02562 * 21 20 19 23 23 C 1.31862 * 121.72532 * 359.96016 * 22 21 20 24 24 C 1.38199 * 120.77111 * 0.03923 * 23 22 21 25 25 C 1.52994 * 109.47290 * 86.39362 * 17 16 15 26 26 C 1.52997 * 117.49884 * 252.04945 * 25 17 16 27 27 C 1.52999 * 117.50023 * 183.42175 * 25 17 16 28 28 H 1.09000 * 109.47014 * 270.00150 * 1 2 3 29 29 H 1.08998 * 109.46903 * 30.00228 * 1 2 3 30 30 H 1.08997 * 109.47063 * 150.00663 * 1 2 3 31 31 H 1.09001 * 109.46818 * 29.99407 * 3 2 1 32 32 H 1.08995 * 109.47251 * 150.00186 * 3 2 1 33 33 H 0.97001 * 120.00533 * 180.02562 * 7 6 4 34 34 H 1.08992 * 109.47334 * 59.99795 * 14 12 2 35 35 H 1.08992 * 109.46941 * 299.99412 * 14 12 2 36 36 H 1.09000 * 109.47421 * 60.00129 * 15 14 12 37 37 H 1.09000 * 109.47284 * 299.99421 * 15 14 12 38 38 H 1.00895 * 110.99882 * 298.86747 * 16 15 14 39 39 H 1.08002 * 120.42097 * 359.69765 * 20 19 17 40 40 H 1.07997 * 119.62239 * 180.02562 * 21 20 19 41 41 H 1.08005 * 119.61418 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.42557 * 179.97438 * 24 23 22 43 43 H 1.09007 * 115.54624 * 37.75111 * 25 17 16 44 44 H 1.08993 * 117.49957 * 359.97438 * 26 25 17 45 45 H 1.09004 * 117.50210 * 145.02248 * 26 25 17 46 46 H 1.09003 * 117.50056 * 214.97965 * 27 25 17 47 47 H 1.08998 * 117.49971 * 0.02562 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8779 -1.6729 7 7 3.5534 3.6181 -0.6734 8 14 3.4368 3.4174 -3.4340 9 1 2.3065 4.2599 -3.9005 10 1 4.6969 4.2007 -3.4968 11 1 3.5542 2.2203 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6351 0.0005 16 7 1.6451 -4.9074 0.0011 17 6 2.5649 -6.0463 -0.1205 18 1 3.4126 -5.7638 -0.7447 19 6 1.8432 -7.2098 -0.7501 20 6 2.4749 -8.0145 -1.6860 21 6 1.7814 -9.0729 -2.2418 22 7 0.5343 -9.3203 -1.8918 23 6 -0.0976 -8.5766 -1.0051 24 6 0.5317 -7.5013 -0.4071 25 6 3.0657 -6.4480 1.2683 26 6 4.5198 -6.1232 1.6161 27 6 4.1022 -7.5706 1.3481 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5137 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 4.0296 4.4443 -0.8506 34 1 0.7591 -2.5302 -0.8896 35 1 0.7585 -2.5298 0.8903 36 1 3.0063 -3.5774 0.8905 37 1 3.0063 -3.5775 -0.8895 38 1 1.0708 -4.9929 0.8263 39 1 3.4945 -7.8140 -1.9804 40 1 2.2664 -9.7046 -2.9712 41 1 -1.1190 -8.8103 -0.7432 42 1 0.0087 -6.8956 0.3182 43 1 2.3298 -6.3844 2.0699 44 1 5.1197 -5.6237 0.8555 45 1 4.7409 -5.8458 2.6469 46 1 4.0486 -8.2454 2.2025 47 1 4.4277 -8.0227 0.4113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934695959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:20 Heat of formation + Delta-G solvation = 24.396357 kcal Electronic energy + Delta-G solvation = -25839.617486 eV Core-core repulsion = 22216.048423 eV Total energy + Delta-G solvation = -3623.569064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56298 -39.09926 -38.34554 -35.51744 -34.76270 -33.16117 -32.58910 -31.40080 -30.34813 -27.83324 -26.36619 -25.57371 -23.87215 -23.20467 -22.86473 -22.51201 -21.65921 -20.69992 -18.36779 -17.11733 -16.72083 -16.58455 -16.30100 -16.12539 -15.77930 -15.49214 -15.19880 -14.89724 -14.28939 -14.15590 -13.91481 -13.83941 -13.66572 -13.53979 -12.82187 -12.40864 -12.24017 -12.17832 -12.06697 -11.85781 -11.79925 -11.69689 -11.51706 -11.16949 -11.09449 -10.88803 -10.77014 -10.56830 -10.46620 -10.16116 -9.73741 -9.63929 -9.63027 -9.32086 -8.90927 -8.61788 -8.44238 -7.64429 -6.04934 -4.09660 0.96443 1.08139 3.29614 3.35937 3.39014 3.41582 3.45824 3.58335 3.71417 4.15274 4.27581 4.38273 4.44618 4.47943 4.61661 4.68365 4.80426 4.88926 4.99116 5.00105 5.10715 5.17148 5.28725 5.29397 5.36860 5.41497 5.43112 5.58362 5.61143 5.62425 5.73938 5.78058 5.82167 5.85128 5.92134 6.02878 6.09152 6.17732 6.22804 6.51461 6.80364 7.04594 7.14853 7.43428 7.53868 7.79017 7.91556 8.23019 8.41989 8.89795 9.09411 9.55504 11.03153 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002476 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.416906 B =11305.873023 C =11616.357623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.136 4.136 15 C 0.077 3.923 16 N -0.679 5.679 17 C 0.155 3.845 18 H 0.093 0.907 19 C -0.012 4.012 20 C -0.170 4.170 21 C 0.096 3.904 22 N -0.492 5.492 23 C 0.094 3.906 24 C -0.150 4.150 25 C -0.181 4.181 26 C -0.171 4.171 27 C -0.172 4.172 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.340 0.660 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.132 0.868 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 -23.785 4.125 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.291 3.709 13 O -0.424 6.424 14 C -0.176 4.176 15 C -0.052 4.052 16 N -0.308 5.308 17 C 0.045 3.955 18 H 0.111 0.889 19 C -0.021 4.021 20 C -0.190 4.190 21 C -0.060 4.060 22 N -0.201 5.201 23 C -0.062 4.062 24 C -0.170 4.170 25 C -0.201 4.201 26 C -0.208 4.208 27 C -0.210 4.210 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.170 0.830 41 H 0.170 0.830 42 H 0.150 0.850 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.768 -24.230 3.107 25.100 hybrid contribution 0.868 1.236 0.339 1.548 sum -4.900 -22.994 3.446 23.761 Atomic orbital electron populations 1.21638 0.81432 1.02665 1.00334 1.48163 1.06198 1.07896 1.71277 1.19284 0.92535 0.78167 0.97491 1.21437 1.36448 1.06241 0.92312 0.92481 1.24945 0.95362 0.96408 0.97459 1.69932 1.38478 1.14307 1.30742 0.86493 0.77679 0.78598 0.84641 1.20630 1.21079 1.19875 1.20272 0.88061 0.85154 0.77451 1.90665 1.13982 1.87366 1.50372 1.21586 0.99259 0.92837 1.03937 1.21689 0.94796 0.86338 1.02397 1.60567 1.23169 1.01161 1.45901 1.20058 0.93963 0.88333 0.93171 0.88942 1.20118 0.93982 0.94301 0.93711 1.21994 1.01512 0.97112 0.98391 1.22677 0.90413 0.95292 0.97650 1.67649 1.09801 1.29256 1.13424 1.22731 0.99779 0.91355 0.92364 1.21889 0.95120 0.98365 1.01611 1.23070 0.93349 1.05214 0.98510 1.23054 0.96382 0.98331 1.03057 1.22890 1.03172 0.91613 1.03293 0.93841 0.90844 0.92281 0.95071 0.93885 0.92723 0.88719 0.89905 0.93788 0.90142 0.84132 0.85138 0.83010 0.83022 0.84966 0.87578 0.88353 0.88576 0.88861 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.91 16 2 N -0.60 -12.71 2.86 -182.95 -0.52 -13.23 16 3 C 0.24 6.42 5.16 -5.19 -0.03 6.40 16 4 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.50 10.22 7.67 -10.99 -0.08 10.14 16 13 O -0.55 -13.45 15.56 5.55 0.09 -13.36 16 14 C -0.14 -1.89 4.55 -27.88 -0.13 -2.01 16 15 C 0.08 1.00 4.81 -3.82 -0.02 0.98 16 16 N -0.68 -6.75 5.69 -107.95 -0.61 -7.37 16 17 C 0.16 1.43 2.43 -68.87 -0.17 1.26 16 18 H 0.09 0.94 7.38 -51.93 -0.38 0.56 16 19 C -0.01 -0.11 4.72 -104.31 -0.49 -0.61 16 20 C -0.17 -1.49 9.63 -39.44 -0.38 -1.87 16 21 C 0.10 0.89 11.18 -17.54 -0.20 0.69 16 22 N -0.49 -5.26 10.36 -13.25 -0.14 -5.40 16 23 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 24 C -0.15 -1.31 9.43 -39.44 -0.37 -1.68 16 25 C -0.18 -1.50 5.13 -90.62 -0.46 -1.96 16 26 C -0.17 -1.48 10.18 -26.73 -0.27 -1.75 16 27 C -0.17 -1.32 9.96 -26.73 -0.27 -1.58 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.09 1.25 7.40 -51.93 -0.38 0.87 16 35 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.04 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.08 1.21 7.88 -51.93 -0.41 0.80 16 38 H 0.34 2.83 7.90 -39.29 -0.31 2.52 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.13 0.94 7.43 -52.49 -0.39 0.55 16 43 H 0.11 0.83 7.96 -51.92 -0.41 0.41 16 44 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.70 7.99 -51.93 -0.41 0.29 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -34.16 392.67 -10.03 -44.19 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.61 Total: 1.41 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.87 Total: -3.11 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.54 Total: -51.98 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.16 -10.03 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934695959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.585 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds