Wall clock time and date at job start Tue Mar 31 2020 11:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 120.00082 * 2 1 4 4 C 1.50701 * 109.46430 * 269.99688 * 3 2 1 5 5 H 1.07996 * 120.00507 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99676 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00075 * 0.02562 * 6 4 3 8 8 Si 1.86792 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47361 * 89.99523 * 8 6 4 10 10 H 1.48502 * 109.47343 * 210.00037 * 8 6 4 11 11 H 1.48504 * 109.47001 * 330.00017 * 8 6 4 12 12 C 1.34774 * 120.00159 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00514 * 180.02562 * 12 2 1 14 14 C 1.50701 * 119.99757 * 0.02562 * 12 2 1 15 15 C 1.53001 * 109.46804 * 179.97438 * 14 12 2 16 16 N 1.46909 * 109.46958 * 179.97438 * 15 14 12 17 17 C 1.46901 * 110.99759 * 174.91240 * 16 15 14 18 18 H 1.08998 * 109.47432 * 326.39065 * 17 16 15 19 19 C 1.50699 * 109.46627 * 206.39262 * 17 16 15 20 20 C 1.38652 * 120.78951 * 140.00354 * 19 17 16 21 21 C 1.38205 * 119.16563 * 179.97438 * 20 19 17 22 22 N 1.31879 * 120.75977 * 0.02562 * 21 20 19 23 23 C 1.31862 * 121.72532 * 359.96016 * 22 21 20 24 24 C 1.38199 * 120.77111 * 0.03923 * 23 22 21 25 25 C 1.52994 * 109.47290 * 86.39362 * 17 16 15 26 26 C 1.52997 * 117.49884 * 252.04945 * 25 17 16 27 27 C 1.52999 * 117.50023 * 183.42175 * 25 17 16 28 28 H 1.09000 * 109.47014 * 270.00150 * 1 2 3 29 29 H 1.08998 * 109.46903 * 30.00228 * 1 2 3 30 30 H 1.08997 * 109.47063 * 150.00663 * 1 2 3 31 31 H 1.09001 * 109.46818 * 29.99407 * 3 2 1 32 32 H 1.08995 * 109.47251 * 150.00186 * 3 2 1 33 33 H 0.97001 * 120.00533 * 180.02562 * 7 6 4 34 34 H 1.08992 * 109.47334 * 59.99795 * 14 12 2 35 35 H 1.08992 * 109.46941 * 299.99412 * 14 12 2 36 36 H 1.09000 * 109.47421 * 60.00129 * 15 14 12 37 37 H 1.09000 * 109.47284 * 299.99421 * 15 14 12 38 38 H 1.00895 * 110.99882 * 298.86747 * 16 15 14 39 39 H 1.08002 * 120.42097 * 359.69765 * 20 19 17 40 40 H 1.07997 * 119.62239 * 180.02562 * 21 20 19 41 41 H 1.08005 * 119.61418 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.42557 * 179.97438 * 24 23 22 43 43 H 1.09007 * 115.54624 * 37.75111 * 25 17 16 44 44 H 1.08993 * 117.49957 * 359.97438 * 26 25 17 45 45 H 1.09004 * 117.50210 * 145.02248 * 26 25 17 46 46 H 1.09003 * 117.50056 * 214.97965 * 27 25 17 47 47 H 1.08998 * 117.49971 * 0.02562 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8779 -1.6729 7 7 3.5534 3.6181 -0.6734 8 14 3.4368 3.4174 -3.4340 9 1 2.3065 4.2599 -3.9005 10 1 4.6969 4.2007 -3.4968 11 1 3.5542 2.2203 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6351 0.0005 16 7 1.6451 -4.9074 0.0011 17 6 2.5649 -6.0463 -0.1205 18 1 3.4126 -5.7638 -0.7447 19 6 1.8432 -7.2098 -0.7501 20 6 2.4749 -8.0145 -1.6860 21 6 1.7814 -9.0729 -2.2418 22 7 0.5343 -9.3203 -1.8918 23 6 -0.0976 -8.5766 -1.0051 24 6 0.5317 -7.5013 -0.4071 25 6 3.0657 -6.4480 1.2683 26 6 4.5198 -6.1232 1.6161 27 6 4.1022 -7.5706 1.3481 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5137 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 4.0296 4.4443 -0.8506 34 1 0.7591 -2.5302 -0.8896 35 1 0.7585 -2.5298 0.8903 36 1 3.0063 -3.5774 0.8905 37 1 3.0063 -3.5775 -0.8895 38 1 1.0708 -4.9929 0.8263 39 1 3.4945 -7.8140 -1.9804 40 1 2.2664 -9.7046 -2.9712 41 1 -1.1190 -8.8103 -0.7432 42 1 0.0087 -6.8956 0.3182 43 1 2.3298 -6.3844 2.0699 44 1 5.1197 -5.6237 0.8555 45 1 4.7409 -5.8458 2.6469 46 1 4.0486 -8.2454 2.2025 47 1 4.4277 -8.0227 0.4113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934695959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:19 Heat of formation + Delta-G solvation = 2.374810 kcal Electronic energy + Delta-G solvation = -25840.572412 eV Core-core repulsion = 22216.048423 eV Total energy + Delta-G solvation = -3624.523989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25627 -40.63602 -39.13097 -36.70294 -36.20300 -34.74896 -33.92402 -32.06782 -31.48834 -29.60885 -27.46417 -26.96845 -25.13865 -24.33130 -23.53358 -23.23423 -22.92659 -21.41995 -19.89883 -18.70939 -17.99022 -17.74409 -17.32047 -17.05967 -16.96807 -16.58917 -16.40244 -16.00586 -15.95106 -15.05015 -14.90812 -14.73575 -14.54745 -14.40632 -14.19979 -13.82657 -13.72483 -13.45088 -13.33712 -13.20489 -12.88966 -12.82313 -12.70709 -12.45667 -12.41421 -12.24079 -12.21088 -12.15442 -11.70915 -11.45760 -11.15687 -10.65245 -10.60230 -10.43060 -10.32304 -9.96798 -9.46908 -9.39882 -8.23461 -6.38462 0.31523 0.39579 1.35540 1.38414 1.48824 1.86793 2.29751 2.42662 2.76129 2.94391 3.05682 3.10439 3.66724 3.68631 3.78193 3.88174 3.94616 4.03219 4.08269 4.15849 4.20139 4.27879 4.36382 4.38211 4.44159 4.56764 4.68168 4.74125 4.74170 4.80120 4.92815 4.94933 4.97836 4.98260 4.99854 5.08355 5.11981 5.18157 5.19041 5.22853 5.45777 5.55898 5.84522 5.87438 5.91440 6.05583 6.41564 6.69282 6.81325 7.12868 7.27754 7.50488 8.83471 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002476 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.416906 B =11305.873023 C =11616.357623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.493 3.507 13 O -0.602 6.602 14 C -0.116 4.116 15 C 0.089 3.911 16 N -0.669 5.669 17 C 0.160 3.840 18 H 0.078 0.922 19 C -0.021 4.021 20 C -0.175 4.175 21 C 0.087 3.913 22 N -0.518 5.518 23 C 0.085 3.915 24 C -0.150 4.150 25 C -0.179 4.179 26 C -0.184 4.184 27 C -0.162 4.162 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.023 0.977 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.031 0.969 37 H 0.054 0.946 38 H 0.354 0.646 39 H 0.142 0.858 40 H 0.170 0.830 41 H 0.173 0.827 42 H 0.150 0.850 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 -25.164 3.666 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.282 3.718 13 O -0.484 6.484 14 C -0.156 4.156 15 C -0.041 4.041 16 N -0.300 5.300 17 C 0.050 3.950 18 H 0.096 0.904 19 C -0.030 4.030 20 C -0.195 4.195 21 C -0.070 4.070 22 N -0.228 5.228 23 C -0.071 4.071 24 C -0.170 4.170 25 C -0.199 4.199 26 C -0.221 4.221 27 C -0.200 4.200 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.041 0.959 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.175 0.825 39 H 0.160 0.840 40 H 0.187 0.813 41 H 0.190 0.810 42 H 0.168 0.832 43 H 0.135 0.865 44 H 0.104 0.896 45 H 0.116 0.884 46 H 0.122 0.878 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.833 -25.634 2.659 26.935 hybrid contribution 1.493 1.636 0.525 2.276 sum -6.340 -23.998 3.184 25.024 Atomic orbital electron populations 1.21942 0.77771 1.04026 1.02640 1.48210 1.08491 1.06421 1.71229 1.18743 0.91095 0.80613 0.95933 1.21709 1.36801 1.06525 0.93085 0.92960 1.25874 0.94909 0.96453 1.02014 1.70049 1.39003 1.14776 1.33046 0.85411 0.78116 0.78210 0.79056 1.18742 1.20593 1.19807 1.21423 0.87817 0.86784 0.75758 1.90635 1.16783 1.88291 1.52664 1.21509 0.98893 0.88803 1.06430 1.21418 0.94419 0.87657 1.00617 1.60482 1.22866 0.99939 1.46736 1.19960 0.93449 0.88077 0.93550 0.90372 1.20165 0.94428 0.94308 0.94063 1.22173 1.02144 0.96990 0.98241 1.23016 0.90256 0.95682 0.98017 1.67671 1.10566 1.30191 1.14351 1.23125 1.00724 0.91279 0.92015 1.22080 0.94866 0.98374 1.01710 1.23051 0.93265 1.05394 0.98151 1.23043 0.96866 0.99392 1.02798 1.22932 1.02156 0.91142 1.03737 0.90981 0.91875 0.88554 0.95927 0.98509 0.92385 0.86906 0.86158 0.95073 0.92770 0.82539 0.84009 0.81258 0.81016 0.83203 0.86485 0.89648 0.88402 0.87846 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.24 127.77 1.31 3.55 16 2 N -0.61 -25.70 2.86 -851.12 -2.43 -28.13 16 3 C 0.26 14.04 5.16 85.63 0.44 14.48 16 4 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.37 5.46 84.66 0.46 0.83 16 7 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 8 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 9 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 12 C 0.49 19.96 7.67 87.66 0.67 20.63 16 13 O -0.60 -30.87 15.56 -3.04 -0.05 -30.92 16 14 C -0.12 -2.96 4.55 29.85 0.14 -2.82 16 15 C 0.09 2.22 4.81 86.30 0.42 2.63 16 16 N -0.67 -11.84 5.69 -495.43 -2.82 -14.66 16 17 C 0.16 2.73 2.43 44.17 0.11 2.84 16 18 H 0.08 1.58 7.38 -2.39 -0.02 1.56 16 19 C -0.02 -0.35 4.72 -19.67 -0.09 -0.44 16 20 C -0.18 -2.86 9.63 22.36 0.22 -2.64 16 21 C 0.09 1.48 11.18 84.68 0.95 2.43 16 22 N -0.52 -10.34 10.36 -195.84 -2.03 -12.37 16 23 C 0.08 1.39 11.18 84.68 0.95 2.33 16 24 C -0.15 -2.27 9.43 22.36 0.21 -2.06 16 25 C -0.18 -2.69 5.13 -10.80 -0.06 -2.74 16 26 C -0.18 -3.11 10.18 30.60 0.31 -2.80 16 27 C -0.16 -2.27 9.96 30.60 0.30 -1.97 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 30 H 0.10 2.05 6.44 -2.39 -0.02 2.03 16 31 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 32 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.11 2.55 7.40 -2.39 -0.02 2.54 16 35 H 0.12 2.22 8.11 -2.39 -0.02 2.20 16 36 H 0.03 0.86 8.10 -2.39 -0.02 0.84 16 37 H 0.05 1.65 7.88 -2.39 -0.02 1.63 16 38 H 0.35 4.69 7.90 -89.70 -0.71 3.98 16 39 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 41 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 42 H 0.15 1.63 7.43 -2.91 -0.02 1.61 16 43 H 0.12 1.53 7.96 -2.38 -0.02 1.51 16 44 H 0.08 1.65 8.07 -2.39 -0.02 1.63 16 45 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.10 1.32 7.99 -2.39 -0.02 1.31 16 Total: -1.00 -77.43 392.67 1.80 -75.63 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.25 Total: 16.66 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 6.57 Total: 2.87 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -6.99 Total: -111.51 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.05 Total: -30.92 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -77.43 1.80 -75.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934695959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.004 kcal (2) G-P(sol) polarization free energy of solvation -77.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds