Wall clock time and date at job start Tue Mar 31 2020 11:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99932 * 2 1 4 4 C 1.50701 * 109.47146 * 270.00041 * 3 2 1 5 5 H 1.08005 * 120.00134 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00408 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99417 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00230 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47080 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47255 * 119.99907 * 8 6 4 11 11 H 1.48504 * 109.47007 * 240.00173 * 8 6 4 12 12 C 1.34777 * 120.00030 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99902 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99861 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.47140 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.47201 * 180.02562 * 15 14 12 17 17 C 1.46905 * 110.99729 * 174.74893 * 16 15 14 18 18 H 1.08992 * 109.47237 * 25.75178 * 17 16 15 19 19 C 1.50700 * 109.46794 * 145.75148 * 17 16 15 20 20 C 1.38649 * 120.78806 * 220.00113 * 19 17 16 21 21 C 1.38202 * 119.16176 * 180.02562 * 20 19 17 22 22 N 1.31875 * 120.76674 * 0.24894 * 21 20 19 23 23 C 1.31873 * 121.72176 * 359.47885 * 22 21 20 24 24 C 1.38203 * 120.76151 * 0.52609 * 23 22 21 25 25 C 1.52996 * 109.47040 * 265.74891 * 17 16 15 26 26 C 1.53006 * 117.50065 * 14.19964 * 25 17 16 27 27 C 1.52999 * 117.50216 * 305.57452 * 25 17 16 28 28 H 1.09006 * 109.46611 * 269.99936 * 1 2 3 29 29 H 1.08997 * 109.46915 * 29.99453 * 1 2 3 30 30 H 1.08995 * 109.47050 * 150.00522 * 1 2 3 31 31 H 1.08995 * 109.47197 * 30.00303 * 3 2 1 32 32 H 1.09009 * 109.47147 * 150.00362 * 3 2 1 33 33 H 0.97005 * 119.99517 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47089 * 60.00262 * 14 12 2 35 35 H 1.09005 * 109.47129 * 299.99605 * 14 12 2 36 36 H 1.09002 * 109.47166 * 59.99562 * 15 14 12 37 37 H 1.09001 * 109.47037 * 299.99747 * 15 14 12 38 38 H 1.00895 * 111.00041 * 298.70119 * 16 15 14 39 39 H 1.08000 * 120.41827 * 0.04224 * 20 19 17 40 40 H 1.08002 * 119.62072 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.61709 * 180.26585 * 23 22 21 42 42 H 1.08003 * 120.41736 * 179.72223 * 24 23 22 43 43 H 1.08997 * 115.54916 * 159.90715 * 25 17 16 44 44 H 1.08992 * 117.49638 * 359.97438 * 26 25 17 45 45 H 1.08993 * 117.49860 * 145.02140 * 26 25 17 46 46 H 1.08995 * 117.50536 * 214.98449 * 27 25 17 47 47 H 1.09005 * 117.49703 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2418 6 6 3.1269 2.8775 -1.6729 7 7 3.5542 3.6176 -0.6733 8 14 3.4376 3.4171 -3.4340 9 1 2.8596 2.4170 -4.3673 10 1 2.8006 4.7381 -3.6667 11 1 4.9001 3.5246 -3.6681 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6451 -4.9074 -0.0011 17 6 2.5647 -6.0461 -0.1267 18 1 3.5454 -5.7651 0.2569 19 6 2.0310 -7.2123 0.6647 20 6 2.8839 -8.0197 1.4016 21 6 2.3584 -9.0806 2.1146 22 7 1.0638 -9.3311 2.0953 23 6 0.2227 -8.5815 1.4099 24 6 0.6755 -7.5037 0.6728 25 6 2.6875 -6.4426 -1.5993 26 6 2.1635 -5.4541 -2.6431 27 6 1.3948 -6.7462 -2.3593 28 1 -0.3633 0.0000 1.0278 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5137 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1384 0.5138 33 1 4.0310 4.4435 -0.8506 34 1 0.7585 -2.5298 -0.8903 35 1 0.7591 -2.5302 0.8898 36 1 3.0063 -3.5775 0.8894 37 1 3.0062 -3.5775 -0.8905 38 1 1.0723 -4.9946 0.8248 39 1 3.9455 -7.8219 1.4184 40 1 3.0161 -9.7145 2.6908 41 1 -0.8317 -8.8151 1.4215 42 1 -0.0177 -6.8962 0.1100 43 1 3.5716 -7.0256 -1.8570 44 1 1.7310 -4.5217 -2.2806 45 1 2.7030 -5.3867 -3.5877 46 1 1.4285 -7.5288 -3.1173 47 1 0.4568 -6.6640 -1.8101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934695960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:23 Heat of formation + Delta-G solvation = 29.484322 kcal Electronic energy + Delta-G solvation = -26075.633584 eV Core-core repulsion = 22452.285151 eV Total energy + Delta-G solvation = -3623.348433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70417 -39.13218 -38.30302 -35.17294 -34.71374 -33.27404 -32.59606 -31.50345 -30.27268 -27.85787 -26.59642 -25.64974 -24.05162 -23.23316 -22.92863 -22.23140 -21.63660 -19.98764 -18.37518 -17.36695 -16.84680 -16.58132 -16.36586 -16.04363 -15.75659 -15.31148 -15.24807 -14.77242 -14.54685 -14.18845 -14.00100 -13.91337 -13.71157 -13.24912 -12.90405 -12.31655 -12.21552 -12.19095 -12.01362 -11.86775 -11.81293 -11.47070 -11.39089 -11.17967 -10.97667 -10.84218 -10.58647 -10.43623 -10.20518 -10.16764 -9.84045 -9.65235 -9.61758 -9.42863 -8.91994 -8.66972 -8.44964 -7.64996 -6.05444 -4.10065 0.85317 0.93862 3.28844 3.35821 3.38804 3.44891 3.49894 3.64246 3.73011 4.16981 4.18926 4.35989 4.44645 4.56575 4.69121 4.82217 4.86793 4.93304 5.05230 5.13196 5.16828 5.21823 5.29500 5.31868 5.39551 5.47139 5.50418 5.60172 5.67567 5.69522 5.76485 5.86025 5.91318 5.92819 6.05331 6.08439 6.14391 6.21688 6.34258 6.41461 6.80411 7.04085 7.15390 7.43091 7.53341 7.68721 7.91135 8.22497 8.41221 8.89498 9.08714 9.55140 11.02719 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.002489 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.877243 B =11248.095196 C =11697.060724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.135 4.135 15 C 0.073 3.927 16 N -0.682 5.682 17 C 0.155 3.845 18 H 0.068 0.932 19 C -0.039 4.039 20 C -0.167 4.167 21 C 0.097 3.903 22 N -0.489 5.489 23 C 0.095 3.905 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.160 4.160 27 C -0.168 4.168 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.341 0.659 39 H 0.133 0.867 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 -23.315 2.659 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.423 6.423 14 C -0.176 4.176 15 C -0.056 4.056 16 N -0.313 5.313 17 C 0.045 3.955 18 H 0.086 0.914 19 C -0.047 4.047 20 C -0.187 4.187 21 C -0.060 4.060 22 N -0.198 5.198 23 C -0.061 4.061 24 C -0.175 4.175 25 C -0.170 4.170 26 C -0.197 4.197 27 C -0.204 4.204 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.160 0.840 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.181 -23.786 2.510 24.973 hybrid contribution 0.872 1.146 -0.599 1.560 sum -6.309 -22.640 1.910 23.580 Atomic orbital electron populations 1.21638 0.81435 1.02650 1.00335 1.48161 1.06189 1.07891 1.71262 1.19291 0.92541 0.78172 0.97528 1.21467 1.36324 1.06230 0.92299 0.92425 1.24950 0.95391 0.96420 0.97457 1.69946 1.38478 1.14346 1.30670 0.86440 0.78083 0.78313 0.84578 1.19779 1.20959 1.20879 1.20270 0.88063 0.85154 0.77492 1.90671 1.13983 1.87354 1.50341 1.21585 0.99220 0.92829 1.03933 1.21785 0.94862 0.86410 1.02520 1.60538 1.23805 1.01217 1.45774 1.19884 0.95116 0.87376 0.93080 0.91417 1.20414 0.93847 0.96035 0.94429 1.22075 1.01111 0.96927 0.98631 1.22725 0.91746 0.95165 0.96361 1.67672 1.04144 1.29049 1.18982 1.22793 0.99659 0.91197 0.92467 1.22090 0.95968 0.99053 1.00388 1.22205 0.98314 1.05121 0.91390 1.22991 1.03071 0.95401 0.98255 1.22820 0.95727 0.99384 1.02518 0.93854 0.90837 0.92290 0.95063 0.93897 0.92779 0.88688 0.89933 0.94172 0.89532 0.84028 0.84870 0.82872 0.82815 0.84021 0.88084 0.86885 0.89703 0.89865 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.24 59.85 0.61 1.90 16 2 N -0.60 -12.59 2.86 -182.95 -0.52 -13.11 16 3 C 0.24 6.38 5.16 -5.19 -0.03 6.36 16 4 C -0.52 -14.87 9.39 -34.44 -0.32 -15.20 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.50 10.11 7.67 -10.99 -0.08 10.02 16 13 O -0.55 -13.39 15.56 5.55 0.09 -13.31 16 14 C -0.14 -1.83 4.56 -27.88 -0.13 -1.96 16 15 C 0.07 0.93 3.90 -3.82 -0.01 0.92 16 16 N -0.68 -6.52 4.55 -107.95 -0.49 -7.01 16 17 C 0.16 1.44 2.73 -68.86 -0.19 1.25 16 18 H 0.07 0.68 7.63 -51.93 -0.40 0.28 16 19 C -0.04 -0.33 4.69 -104.32 -0.49 -0.82 16 20 C -0.17 -1.37 9.78 -39.44 -0.39 -1.76 16 21 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 22 N -0.49 -4.89 10.36 -13.25 -0.14 -5.03 16 23 C 0.10 0.80 11.18 -17.55 -0.20 0.61 16 24 C -0.16 -1.24 8.07 -39.44 -0.32 -1.56 16 25 C -0.15 -1.43 5.77 -90.62 -0.52 -1.96 16 26 C -0.16 -1.66 9.35 -26.73 -0.25 -1.91 16 27 C -0.17 -1.51 9.52 -26.73 -0.25 -1.77 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.27 7.42 -51.92 -0.39 0.88 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 34 H 0.09 1.18 7.40 -51.93 -0.38 0.80 16 35 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 36 H 0.04 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.09 1.27 7.12 -51.93 -0.37 0.90 16 38 H 0.34 2.96 7.66 -39.29 -0.30 2.66 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.14 0.99 6.49 -52.48 -0.34 0.65 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.11 1.32 5.94 -51.93 -0.31 1.01 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.10 0.85 6.39 -51.93 -0.33 0.52 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -33.56 383.84 -9.76 -43.32 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.34 Total: 2.07 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.86 Total: -3.63 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.41 Total: -51.08 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.56 -9.76 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934695960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.806 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds