Wall clock time and date at job start Tue Mar 31 2020 11:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99932 * 2 1 4 4 C 1.50701 * 109.47146 * 270.00041 * 3 2 1 5 5 H 1.08005 * 120.00134 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00408 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99417 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00230 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47080 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47255 * 119.99907 * 8 6 4 11 11 H 1.48504 * 109.47007 * 240.00173 * 8 6 4 12 12 C 1.34777 * 120.00030 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99902 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99861 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.47140 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.47201 * 180.02562 * 15 14 12 17 17 C 1.46905 * 110.99729 * 174.74893 * 16 15 14 18 18 H 1.08992 * 109.47237 * 25.75178 * 17 16 15 19 19 C 1.50700 * 109.46794 * 145.75148 * 17 16 15 20 20 C 1.38649 * 120.78806 * 220.00113 * 19 17 16 21 21 C 1.38202 * 119.16176 * 180.02562 * 20 19 17 22 22 N 1.31875 * 120.76674 * 0.24894 * 21 20 19 23 23 C 1.31873 * 121.72176 * 359.47885 * 22 21 20 24 24 C 1.38203 * 120.76151 * 0.52609 * 23 22 21 25 25 C 1.52996 * 109.47040 * 265.74891 * 17 16 15 26 26 C 1.53006 * 117.50065 * 14.19964 * 25 17 16 27 27 C 1.52999 * 117.50216 * 305.57452 * 25 17 16 28 28 H 1.09006 * 109.46611 * 269.99936 * 1 2 3 29 29 H 1.08997 * 109.46915 * 29.99453 * 1 2 3 30 30 H 1.08995 * 109.47050 * 150.00522 * 1 2 3 31 31 H 1.08995 * 109.47197 * 30.00303 * 3 2 1 32 32 H 1.09009 * 109.47147 * 150.00362 * 3 2 1 33 33 H 0.97005 * 119.99517 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47089 * 60.00262 * 14 12 2 35 35 H 1.09005 * 109.47129 * 299.99605 * 14 12 2 36 36 H 1.09002 * 109.47166 * 59.99562 * 15 14 12 37 37 H 1.09001 * 109.47037 * 299.99747 * 15 14 12 38 38 H 1.00895 * 111.00041 * 298.70119 * 16 15 14 39 39 H 1.08000 * 120.41827 * 0.04224 * 20 19 17 40 40 H 1.08002 * 119.62072 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.61709 * 180.26585 * 23 22 21 42 42 H 1.08003 * 120.41736 * 179.72223 * 24 23 22 43 43 H 1.08997 * 115.54916 * 159.90715 * 25 17 16 44 44 H 1.08992 * 117.49638 * 359.97438 * 26 25 17 45 45 H 1.08993 * 117.49860 * 145.02140 * 26 25 17 46 46 H 1.08995 * 117.50536 * 214.98449 * 27 25 17 47 47 H 1.09005 * 117.49703 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2418 6 6 3.1269 2.8775 -1.6729 7 7 3.5542 3.6176 -0.6733 8 14 3.4376 3.4171 -3.4340 9 1 2.8596 2.4170 -4.3673 10 1 2.8006 4.7381 -3.6667 11 1 4.9001 3.5246 -3.6681 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6451 -4.9074 -0.0011 17 6 2.5647 -6.0461 -0.1267 18 1 3.5454 -5.7651 0.2569 19 6 2.0310 -7.2123 0.6647 20 6 2.8839 -8.0197 1.4016 21 6 2.3584 -9.0806 2.1146 22 7 1.0638 -9.3311 2.0953 23 6 0.2227 -8.5815 1.4099 24 6 0.6755 -7.5037 0.6728 25 6 2.6875 -6.4426 -1.5993 26 6 2.1635 -5.4541 -2.6431 27 6 1.3948 -6.7462 -2.3593 28 1 -0.3633 0.0000 1.0278 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5137 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1384 0.5138 33 1 4.0310 4.4435 -0.8506 34 1 0.7585 -2.5298 -0.8903 35 1 0.7591 -2.5302 0.8898 36 1 3.0063 -3.5775 0.8894 37 1 3.0062 -3.5775 -0.8905 38 1 1.0723 -4.9946 0.8248 39 1 3.9455 -7.8219 1.4184 40 1 3.0161 -9.7145 2.6908 41 1 -0.8317 -8.8151 1.4215 42 1 -0.0177 -6.8962 0.1100 43 1 3.5716 -7.0256 -1.8570 44 1 1.7310 -4.5217 -2.2806 45 1 2.7030 -5.3867 -3.5877 46 1 1.4285 -7.5288 -3.1173 47 1 0.4568 -6.6640 -1.8101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934695960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:23 Heat of formation + Delta-G solvation = 8.190775 kcal Electronic energy + Delta-G solvation = -26076.556942 eV Core-core repulsion = 22452.285151 eV Total energy + Delta-G solvation = -3624.271790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37550 -40.64157 -39.14867 -36.64559 -35.88792 -34.74469 -34.02094 -32.11344 -31.41355 -29.59530 -27.59571 -27.10753 -25.25699 -24.42802 -23.60685 -23.07300 -22.85108 -20.76255 -19.87909 -18.70905 -18.12330 -17.88732 -17.45254 -17.09027 -16.84048 -16.54494 -16.29888 -16.12186 -15.62313 -15.46404 -14.93095 -14.71769 -14.52830 -14.29854 -14.28359 -13.81704 -13.58833 -13.46204 -13.38569 -13.22187 -12.87365 -12.78501 -12.55342 -12.49407 -12.31093 -12.22421 -12.20965 -11.93196 -11.67462 -11.18591 -10.94787 -10.65920 -10.61163 -10.49083 -10.31572 -10.02947 -9.52931 -9.39916 -8.23238 -6.38049 0.25169 0.29358 1.35783 1.38105 1.50053 1.87001 2.29779 2.42829 2.86057 2.98204 3.05979 3.09194 3.62251 3.67717 3.84465 3.91414 3.97879 4.08272 4.15291 4.23013 4.25455 4.29301 4.34828 4.44049 4.56413 4.65549 4.68677 4.74146 4.75661 4.89129 4.94474 4.95974 4.99081 4.99700 5.06473 5.09135 5.12428 5.23041 5.35768 5.39485 5.51590 5.56464 5.82025 5.84719 5.91372 6.05746 6.38681 6.69914 6.81583 7.07427 7.28197 7.50766 8.83979 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.002489 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.877243 B =11248.095196 C =11697.060724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.493 3.507 13 O -0.602 6.602 14 C -0.115 4.115 15 C 0.085 3.915 16 N -0.666 5.666 17 C 0.159 3.841 18 H 0.058 0.942 19 C -0.045 4.045 20 C -0.172 4.172 21 C 0.088 3.912 22 N -0.515 5.515 23 C 0.088 3.912 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.174 4.174 27 C -0.153 4.153 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.022 0.978 32 H -0.004 1.004 33 H 0.267 0.733 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.023 0.977 37 H 0.063 0.937 38 H 0.351 0.649 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.155 0.845 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -24.834 1.844 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.135 3.865 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.282 3.718 13 O -0.484 6.484 14 C -0.155 4.155 15 C -0.044 4.044 16 N -0.298 5.298 17 C 0.049 3.951 18 H 0.076 0.924 19 C -0.054 4.054 20 C -0.192 4.192 21 C -0.068 4.068 22 N -0.224 5.224 23 C -0.068 4.068 24 C -0.171 4.171 25 C -0.173 4.173 26 C -0.211 4.211 27 C -0.190 4.190 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.040 0.960 32 H 0.014 0.986 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.171 0.829 39 H 0.163 0.837 40 H 0.189 0.811 41 H 0.192 0.808 42 H 0.172 0.828 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.300 -25.330 1.704 27.037 hybrid contribution 1.517 1.587 -0.292 2.215 sum -7.783 -23.742 1.412 25.026 Atomic orbital electron populations 1.21944 0.77761 1.04100 1.02575 1.48205 1.08486 1.06402 1.71215 1.18749 0.91067 0.80638 0.96004 1.21730 1.36592 1.06467 0.93036 0.92844 1.25886 0.94968 0.96490 1.02018 1.70062 1.39049 1.14847 1.33008 0.85357 0.77852 0.78443 0.79105 1.19005 1.19377 1.20819 1.21429 0.87804 0.86795 0.75758 1.90640 1.16828 1.88293 1.52677 1.21501 0.98830 0.88707 1.06477 1.21520 0.94497 0.87754 1.00673 1.60459 1.23228 0.99912 1.46208 1.19803 0.94642 0.87462 0.93148 0.92413 1.20384 0.94382 0.95899 0.94717 1.22249 1.01809 0.96784 0.98390 1.23059 0.91744 0.95507 0.96526 1.67698 1.04889 1.29956 1.19874 1.23177 1.00562 0.91022 0.92043 1.22191 0.95748 0.98985 1.00166 1.22249 0.98952 1.04810 0.91297 1.22940 1.04136 0.95542 0.98504 1.22856 0.95562 0.98395 1.02180 0.91147 0.91839 0.88413 0.95971 0.98597 0.92422 0.86468 0.86479 0.95888 0.91841 0.82907 0.83744 0.81113 0.80776 0.82762 0.87873 0.88081 0.90045 0.89117 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.22 10.24 127.77 1.31 3.53 16 2 N -0.61 -25.52 2.86 -851.12 -2.43 -27.95 16 3 C 0.26 13.97 5.16 85.63 0.44 14.41 16 4 C -0.54 -31.27 9.39 25.60 0.24 -31.03 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.30 5.46 84.66 0.46 0.76 16 7 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 8 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.49 19.80 7.67 87.66 0.67 20.47 16 13 O -0.60 -30.84 15.56 -3.05 -0.05 -30.89 16 14 C -0.12 -2.86 4.56 29.85 0.14 -2.73 16 15 C 0.09 2.10 3.90 86.30 0.34 2.44 16 16 N -0.67 -11.40 4.55 -495.44 -2.25 -13.65 16 17 C 0.16 2.74 2.73 44.17 0.12 2.86 16 18 H 0.06 1.13 7.63 -2.39 -0.02 1.11 16 19 C -0.05 -0.70 4.69 -19.67 -0.09 -0.79 16 20 C -0.17 -2.58 9.78 22.36 0.22 -2.37 16 21 C 0.09 1.38 11.18 84.68 0.95 2.32 16 22 N -0.51 -9.45 10.36 -195.84 -2.03 -11.48 16 23 C 0.09 1.29 11.18 84.68 0.95 2.24 16 24 C -0.15 -2.04 8.07 22.36 0.18 -1.86 16 25 C -0.15 -2.73 5.77 -10.79 -0.06 -2.79 16 26 C -0.17 -3.43 9.35 30.60 0.29 -3.15 16 27 C -0.15 -2.43 9.52 30.60 0.29 -2.14 16 28 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 30 H 0.10 2.02 6.44 -2.39 -0.02 2.00 16 31 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 32 H 0.00 -0.26 7.42 -2.38 -0.02 -0.28 16 33 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 34 H 0.12 2.49 7.40 -2.39 -0.02 2.47 16 35 H 0.12 2.18 8.11 -2.38 -0.02 2.16 16 36 H 0.02 0.64 8.10 -2.39 -0.02 0.62 16 37 H 0.06 1.88 7.12 -2.39 -0.02 1.87 16 38 H 0.35 5.06 7.66 -89.70 -0.69 4.37 16 39 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.15 1.65 6.49 -2.91 -0.02 1.63 16 43 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.10 2.25 5.94 -2.39 -0.01 2.23 16 45 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.10 1.51 6.39 -2.38 -0.02 1.49 16 Total: -1.00 -76.32 383.84 2.27 -74.05 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.28 Total: 17.01 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 6.43 Total: 2.17 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -6.43 Total: -109.46 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.05 Total: -30.89 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.32 2.27 -74.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934695960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.242 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds