Wall clock time and date at job start Tue Mar 31 2020 11:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35532 * 125.67779 * 2 1 4 4 C 1.35454 * 108.87104 * 179.97438 * 3 2 1 5 5 C 1.39831 * 107.86572 * 359.73520 * 4 3 2 6 6 C 1.37649 * 125.67569 * 179.97438 * 2 1 3 7 7 C 1.46671 * 126.23273 * 0.02562 * 6 2 1 8 8 O 1.21690 * 120.00323 * 46.77665 * 7 6 2 9 9 N 1.34783 * 119.99894 * 226.77091 * 7 6 2 10 10 C 1.43506 * 122.55243 * 355.95757 * 9 7 6 11 11 C 1.51720 * 114.25584 * 122.92059 * 10 9 7 12 12 C 1.51146 * 111.88701 * 82.64766 * 11 10 9 13 13 H 1.09001 * 110.23609 * 34.31549 * 12 11 10 14 14 C 1.53402 * 110.93589 * 156.74506 * 12 11 10 15 15 N 1.46598 * 108.10629 * 102.73846 * 14 12 11 16 16 C 1.36940 * 125.31640 * 178.65153 * 15 14 12 17 17 H 1.07996 * 120.00113 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00157 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99998 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00250 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46712 * 60.00176 * 20 18 16 22 22 H 1.48500 * 109.47172 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47180 * 300.00485 * 20 18 16 24 24 C 1.46663 * 109.36959 * 358.66038 * 15 14 12 25 25 C 1.54188 * 106.89886 * 18.24453 * 24 15 14 26 26 H 1.09003 * 111.45327 * 91.58097 * 25 24 15 27 27 C 1.51848 * 109.37174 * 214.10758 * 25 24 15 28 28 C 1.49545 * 122.54925 * 175.93530 * 9 7 6 29 29 H 1.08997 * 109.47093 * 264.73592 * 1 2 3 30 30 H 1.09004 * 109.46920 * 24.73099 * 1 2 3 31 31 H 1.09000 * 109.46942 * 144.73192 * 1 2 3 32 32 H 1.08005 * 125.56557 * 359.97438 * 3 2 1 33 33 H 1.07997 * 126.06628 * 179.97438 * 4 3 2 34 34 H 1.07994 * 126.46110 * 180.26669 * 5 4 3 35 35 H 1.08995 * 108.53007 * 244.16093 * 10 9 7 36 36 H 1.09005 * 108.52615 * 1.68618 * 10 9 7 37 37 H 1.09000 * 108.99478 * 203.26569 * 11 10 9 38 38 H 1.08998 * 108.99852 * 322.10354 * 11 10 9 39 39 H 1.08994 * 109.74305 * 222.41542 * 14 12 11 40 40 H 1.08998 * 109.74050 * 343.07220 * 14 12 11 41 41 H 0.97003 * 119.99712 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.97205 * 137.64379 * 24 15 14 43 43 H 1.09002 * 109.95971 * 258.86657 * 24 15 14 44 44 H 1.08997 * 109.00879 * 54.38660 * 27 25 24 45 45 H 1.09004 * 109.00580 * 295.52103 * 27 25 24 46 46 H 1.08999 * 110.26789 * 131.25716 * 28 9 7 47 47 H 1.09007 * 110.39066 * 9.22635 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5780 -0.6888 0.0071 6 6 2.2678 -1.1182 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.9376 -2.8668 -0.7676 9 7 2.3627 -3.4011 0.8515 10 6 3.4542 -3.0644 1.7202 11 6 3.1736 -3.2979 3.1928 12 6 3.3943 -4.7404 3.5866 13 1 4.2179 -5.1660 3.0133 14 6 3.6750 -4.8615 5.0899 15 7 2.4539 -5.3409 5.7442 16 6 2.3217 -5.5979 7.0828 17 1 3.1602 -5.4483 7.7467 18 6 1.1100 -6.0506 7.5863 19 7 0.0881 -6.2333 6.7770 20 14 0.9298 -6.4018 9.4121 21 1 1.1979 -5.1615 10.1835 22 1 -0.4515 -6.8696 9.6923 23 1 1.8996 -7.4529 9.8120 24 6 1.3960 -5.5025 4.7414 25 6 2.0880 -5.5569 3.3646 26 1 2.3207 -6.5818 3.0756 27 6 1.1959 -4.9002 2.3261 28 6 1.8821 -4.8128 0.9624 29 1 -0.3633 -0.0943 1.0233 30 1 -0.3633 0.9335 -0.4300 31 1 -0.3633 -0.8391 -0.5934 32 1 1.9082 2.1236 -0.0004 33 1 4.4133 1.3611 0.0003 34 1 4.4583 -1.3144 0.0132 35 1 4.3211 -3.6600 1.4341 36 1 3.6990 -2.0119 1.5769 37 1 3.8335 -2.6636 3.7847 38 1 2.1390 -3.0279 3.4041 39 1 4.4854 -5.5709 5.2571 40 1 3.9502 -3.8867 5.4926 41 1 -0.7585 -6.5500 7.1289 42 1 0.8506 -6.4288 4.9216 43 1 0.7124 -4.6544 4.7817 44 1 0.9422 -3.8944 2.6610 45 1 0.2798 -5.4823 2.2259 46 1 2.7245 -5.5030 0.9187 47 1 1.1709 -5.0355 0.1669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946483429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:48 Heat of formation + Delta-G solvation = 55.723446 kcal Electronic energy + Delta-G solvation = -27664.666623 eV Core-core repulsion = 24042.456004 eV Total energy + Delta-G solvation = -3622.210619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58820 -39.91711 -38.28511 -35.92713 -33.37389 -32.87774 -32.30619 -30.69368 -29.56437 -27.41527 -27.26739 -26.65362 -24.47041 -23.10985 -22.98871 -21.27514 -20.78396 -20.07116 -19.14111 -18.29096 -17.55355 -16.89413 -16.55236 -15.62640 -15.52540 -15.19005 -14.95547 -14.34539 -14.12595 -13.87553 -13.73567 -13.45193 -13.20997 -13.12398 -12.85318 -12.63030 -12.38126 -12.32523 -12.26536 -12.18011 -11.67833 -11.41100 -11.18224 -11.06809 -10.83778 -10.73829 -10.66580 -10.14851 -10.03920 -9.84719 -9.73633 -9.61400 -9.42543 -8.84067 -8.66911 -8.54551 -8.26140 -6.79041 -5.65359 -3.04057 1.54397 2.32827 2.65442 3.12398 3.19148 3.40828 3.45058 3.46383 4.50823 4.51801 4.59826 4.86057 4.92413 5.01373 5.08709 5.12001 5.25845 5.29048 5.34823 5.36545 5.38670 5.49355 5.51130 5.62060 5.75807 5.80925 5.90492 5.94871 5.97303 6.06766 6.14217 6.21008 6.36375 6.43239 6.48495 6.59787 6.64555 6.67157 6.72078 6.82280 6.85564 7.05522 7.06822 7.48845 7.57614 7.67373 7.88486 8.08729 8.37233 9.25925 9.87037 10.51204 11.40360 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.003219 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.467585 B = 8697.325143 C = 8783.936315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.414 5.414 3 C 0.006 3.994 4 C -0.205 4.205 5 C -0.150 4.150 6 C -0.039 4.039 7 C 0.595 3.405 8 O -0.548 6.548 9 N -0.592 5.592 10 C 0.092 3.908 11 C -0.125 4.125 12 C -0.092 4.092 13 H 0.066 0.934 14 C 0.142 3.858 15 N -0.602 5.602 16 C -0.225 4.225 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.171 3.829 25 C -0.109 4.109 26 H 0.067 0.933 27 C -0.125 4.125 28 C 0.116 3.884 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.252 0.748 42 H 0.089 0.911 43 H 0.013 0.987 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 11.816 -15.096 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.088 5.088 3 C -0.129 4.129 4 C -0.229 4.229 5 C -0.176 4.176 6 C -0.153 4.153 7 C 0.383 3.617 8 O -0.426 6.426 9 N -0.324 5.324 10 C -0.032 4.032 11 C -0.163 4.163 12 C -0.111 4.111 13 H 0.084 0.916 14 C 0.016 3.984 15 N -0.328 5.328 16 C -0.354 4.354 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.743 3.257 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.046 3.954 25 C -0.128 4.128 26 H 0.086 0.914 27 C -0.164 4.164 28 C -0.005 4.005 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.184 0.816 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.031 0.969 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.178 11.547 -15.357 19.663 hybrid contribution -0.059 -0.049 1.135 1.137 sum 4.119 11.498 -14.223 18.747 Atomic orbital electron populations 1.22243 0.76410 1.05118 1.04081 1.43829 1.06597 1.04994 1.53340 1.21960 0.90710 0.91351 1.08830 1.20795 0.95960 0.94925 1.11248 1.21301 0.94275 0.95331 1.06710 1.20075 0.90859 0.87384 1.16947 1.16950 0.81231 0.83480 0.80063 1.90790 1.32063 1.79866 1.39887 1.47781 1.35523 1.11688 1.37401 1.21140 0.88518 1.02748 0.90753 1.21452 1.03526 0.97255 0.94065 1.21778 0.97680 0.94632 0.97013 0.91551 1.21129 0.90734 0.96507 0.90022 1.44193 1.07285 1.77271 1.04073 1.19029 0.96766 1.37342 0.82241 0.90588 1.24784 0.95882 1.01836 0.98046 1.69887 1.02153 1.52340 1.32677 0.86183 0.76795 0.78077 0.84620 1.21256 1.21605 1.21168 1.21440 0.89704 1.01848 0.82445 1.22428 0.94760 0.97786 0.97843 0.91415 1.21861 0.98952 1.02162 0.93395 1.22352 0.99499 0.80168 0.98494 0.90485 0.89420 0.88541 0.81580 0.84054 0.83734 0.91939 0.89054 0.90991 0.90790 0.96259 0.96192 0.93780 0.89323 0.96901 0.90918 0.91366 0.90168 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 10.88 59.85 0.65 1.23 16 2 N -0.41 -4.76 3.16 -120.23 -0.38 -5.14 16 3 C 0.01 0.05 11.37 -16.91 -0.19 -0.14 16 4 C -0.21 -2.04 10.81 -39.98 -0.43 -2.47 16 5 C -0.15 -1.70 8.55 -39.12 -0.33 -2.04 16 6 C -0.04 -0.51 6.10 -81.98 -0.50 -1.01 16 7 C 0.59 8.86 7.34 -12.85 -0.09 8.76 16 8 O -0.55 -9.55 15.58 5.20 0.08 -9.47 16 9 N -0.59 -8.07 2.61 -175.86 -0.46 -8.53 16 10 C 0.09 1.13 5.31 -6.28 -0.03 1.09 16 11 C -0.12 -1.81 4.77 -28.31 -0.14 -1.95 16 12 C -0.09 -1.51 2.78 -89.94 -0.25 -1.76 16 13 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 14 C 0.14 2.91 6.82 -3.78 -0.03 2.89 16 15 N -0.60 -15.34 3.38 -172.05 -0.58 -15.93 16 16 C -0.23 -6.30 10.25 -15.06 -0.15 -6.45 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 19 N -0.92 -26.95 10.16 55.49 0.56 -26.39 16 20 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.17 4.07 5.13 -3.33 -0.02 4.06 16 25 C -0.11 -1.95 2.93 -89.18 -0.26 -2.21 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 C -0.13 -1.98 4.50 -27.36 -0.12 -2.10 16 28 C 0.12 1.57 6.17 -2.39 -0.01 1.56 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.10 1.05 6.92 -51.93 -0.36 0.69 16 32 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.15 1.40 7.32 -52.49 -0.38 1.02 16 35 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 36 H 0.09 1.04 4.17 -51.93 -0.22 0.83 16 37 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 38 H 0.07 1.26 5.86 -51.93 -0.30 0.95 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.02 0.41 7.40 -51.93 -0.38 0.03 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 42 H 0.09 2.41 6.19 -51.93 -0.32 2.09 16 43 H 0.01 0.34 7.72 -51.93 -0.40 -0.06 16 44 H 0.07 1.26 5.47 -51.93 -0.28 0.97 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.08 0.98 7.81 -51.93 -0.41 0.57 16 47 H 0.09 1.23 7.31 -51.93 -0.38 0.85 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -32.94 356.96 -9.57 -42.50 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.13 Total: 1.39 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.01 Total: -0.91 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.86 Total: -55.98 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.94 -9.57 -42.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946483429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.226 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds