Wall clock time and date at job start Tue Mar 31 2020 11:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35532 * 125.67779 * 2 1 4 4 C 1.35454 * 108.87104 * 179.97438 * 3 2 1 5 5 C 1.39831 * 107.86572 * 359.73520 * 4 3 2 6 6 C 1.37649 * 125.67569 * 179.97438 * 2 1 3 7 7 C 1.46671 * 126.23273 * 0.02562 * 6 2 1 8 8 O 1.21690 * 120.00323 * 46.77665 * 7 6 2 9 9 N 1.34783 * 119.99894 * 226.77091 * 7 6 2 10 10 C 1.43506 * 122.55243 * 355.95757 * 9 7 6 11 11 C 1.51720 * 114.25584 * 122.92059 * 10 9 7 12 12 C 1.51146 * 111.88701 * 82.64766 * 11 10 9 13 13 H 1.09001 * 110.23609 * 34.31549 * 12 11 10 14 14 C 1.53402 * 110.93589 * 156.74506 * 12 11 10 15 15 N 1.46598 * 108.10629 * 102.73846 * 14 12 11 16 16 C 1.36940 * 125.31640 * 178.65153 * 15 14 12 17 17 H 1.07996 * 120.00113 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00157 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99998 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00250 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46712 * 60.00176 * 20 18 16 22 22 H 1.48500 * 109.47172 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47180 * 300.00485 * 20 18 16 24 24 C 1.46663 * 109.36959 * 358.66038 * 15 14 12 25 25 C 1.54188 * 106.89886 * 18.24453 * 24 15 14 26 26 H 1.09003 * 111.45327 * 91.58097 * 25 24 15 27 27 C 1.51848 * 109.37174 * 214.10758 * 25 24 15 28 28 C 1.49545 * 122.54925 * 175.93530 * 9 7 6 29 29 H 1.08997 * 109.47093 * 264.73592 * 1 2 3 30 30 H 1.09004 * 109.46920 * 24.73099 * 1 2 3 31 31 H 1.09000 * 109.46942 * 144.73192 * 1 2 3 32 32 H 1.08005 * 125.56557 * 359.97438 * 3 2 1 33 33 H 1.07997 * 126.06628 * 179.97438 * 4 3 2 34 34 H 1.07994 * 126.46110 * 180.26669 * 5 4 3 35 35 H 1.08995 * 108.53007 * 244.16093 * 10 9 7 36 36 H 1.09005 * 108.52615 * 1.68618 * 10 9 7 37 37 H 1.09000 * 108.99478 * 203.26569 * 11 10 9 38 38 H 1.08998 * 108.99852 * 322.10354 * 11 10 9 39 39 H 1.08994 * 109.74305 * 222.41542 * 14 12 11 40 40 H 1.08998 * 109.74050 * 343.07220 * 14 12 11 41 41 H 0.97003 * 119.99712 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.97205 * 137.64379 * 24 15 14 43 43 H 1.09002 * 109.95971 * 258.86657 * 24 15 14 44 44 H 1.08997 * 109.00879 * 54.38660 * 27 25 24 45 45 H 1.09004 * 109.00580 * 295.52103 * 27 25 24 46 46 H 1.08999 * 110.26789 * 131.25716 * 28 9 7 47 47 H 1.09007 * 110.39066 * 9.22635 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5780 -0.6888 0.0071 6 6 2.2678 -1.1182 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.9376 -2.8668 -0.7676 9 7 2.3627 -3.4011 0.8515 10 6 3.4542 -3.0644 1.7202 11 6 3.1736 -3.2979 3.1928 12 6 3.3943 -4.7404 3.5866 13 1 4.2179 -5.1660 3.0133 14 6 3.6750 -4.8615 5.0899 15 7 2.4539 -5.3409 5.7442 16 6 2.3217 -5.5979 7.0828 17 1 3.1602 -5.4483 7.7467 18 6 1.1100 -6.0506 7.5863 19 7 0.0881 -6.2333 6.7770 20 14 0.9298 -6.4018 9.4121 21 1 1.1979 -5.1615 10.1835 22 1 -0.4515 -6.8696 9.6923 23 1 1.8996 -7.4529 9.8120 24 6 1.3960 -5.5025 4.7414 25 6 2.0880 -5.5569 3.3646 26 1 2.3207 -6.5818 3.0756 27 6 1.1959 -4.9002 2.3261 28 6 1.8821 -4.8128 0.9624 29 1 -0.3633 -0.0943 1.0233 30 1 -0.3633 0.9335 -0.4300 31 1 -0.3633 -0.8391 -0.5934 32 1 1.9082 2.1236 -0.0004 33 1 4.4133 1.3611 0.0003 34 1 4.4583 -1.3144 0.0132 35 1 4.3211 -3.6600 1.4341 36 1 3.6990 -2.0119 1.5769 37 1 3.8335 -2.6636 3.7847 38 1 2.1390 -3.0279 3.4041 39 1 4.4854 -5.5709 5.2571 40 1 3.9502 -3.8867 5.4926 41 1 -0.7585 -6.5500 7.1289 42 1 0.8506 -6.4288 4.9216 43 1 0.7124 -4.6544 4.7817 44 1 0.9422 -3.8944 2.6610 45 1 0.2798 -5.4823 2.2259 46 1 2.7245 -5.5030 0.9187 47 1 1.1709 -5.0355 0.1669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946483429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:47 Heat of formation + Delta-G solvation = 36.618617 kcal Electronic energy + Delta-G solvation = -27665.495071 eV Core-core repulsion = 24042.456004 eV Total energy + Delta-G solvation = -3623.039067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.44935 -41.10518 -39.61351 -37.34108 -34.95577 -33.93413 -33.50457 -32.42864 -30.60722 -28.91209 -28.74559 -27.41237 -26.16124 -24.40377 -24.31508 -22.30891 -21.89187 -21.57050 -20.10617 -19.67690 -18.93560 -18.47426 -17.60954 -16.91616 -16.68982 -16.42001 -16.14425 -15.95952 -15.43628 -15.16153 -14.95917 -14.59697 -14.46240 -14.25465 -14.03180 -13.84601 -13.66336 -13.44148 -13.20249 -13.18210 -13.04333 -12.93179 -12.83514 -12.67864 -12.47802 -12.34048 -12.07554 -11.85799 -11.74845 -11.44439 -11.12216 -11.01504 -11.01037 -10.69633 -9.74268 -9.62450 -9.08940 -8.85575 -7.79130 -5.20582 0.64381 1.42534 1.44846 1.48129 1.54542 1.87711 2.19690 2.26590 2.49690 3.32137 3.54088 3.71667 3.72128 3.85064 3.93633 3.97177 4.07099 4.21620 4.23905 4.26157 4.29592 4.46061 4.53567 4.56420 4.63799 4.67203 4.67973 4.71174 4.76038 4.94245 4.99491 5.07040 5.11323 5.12752 5.21455 5.23326 5.27259 5.30104 5.45704 5.50125 5.62529 5.75059 5.85292 5.89749 6.04596 6.29514 6.33980 6.43934 7.00985 7.12985 7.83204 8.44585 9.24400 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.003219 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.467585 B = 8697.325143 C = 8783.936315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.425 5.425 3 C 0.014 3.986 4 C -0.216 4.216 5 C -0.145 4.145 6 C -0.080 4.080 7 C 0.592 3.408 8 O -0.584 6.584 9 N -0.591 5.591 10 C 0.097 3.903 11 C -0.116 4.116 12 C -0.079 4.079 13 H 0.104 0.896 14 C 0.134 3.866 15 N -0.625 5.625 16 C -0.243 4.243 17 H 0.081 0.919 18 C -0.067 4.067 19 N -0.950 5.950 20 Si 0.979 3.021 21 H -0.278 1.278 22 H -0.295 1.295 23 H -0.275 1.275 24 C 0.180 3.820 25 C -0.095 4.095 26 H 0.077 0.923 27 C -0.113 4.113 28 C 0.123 3.877 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.201 0.799 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.026 0.974 40 H 0.023 0.977 41 H 0.245 0.755 42 H 0.048 0.952 43 H -0.024 1.024 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.106 0.894 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.728 13.324 -15.937 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.099 5.099 3 C -0.120 4.120 4 C -0.239 4.239 5 C -0.172 4.172 6 C -0.194 4.194 7 C 0.381 3.619 8 O -0.466 6.466 9 N -0.322 5.322 10 C -0.026 4.026 11 C -0.154 4.154 12 C -0.097 4.097 13 H 0.122 0.878 14 C 0.009 3.991 15 N -0.351 5.351 16 C -0.372 4.372 17 H 0.099 0.901 18 C -0.260 4.260 19 N -0.600 5.600 20 Si 0.807 3.193 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.201 1.201 24 C 0.055 3.945 25 C -0.114 4.114 26 H 0.096 0.904 27 C -0.152 4.152 28 C 0.002 3.998 29 H 0.093 0.907 30 H 0.140 0.860 31 H 0.092 0.908 32 H 0.218 0.782 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.067 0.933 43 H -0.007 1.007 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.124 0.876 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.726 13.062 -16.197 21.868 hybrid contribution -0.827 -0.443 1.438 1.716 sum 5.900 12.619 -14.760 20.295 Atomic orbital electron populations 1.22308 0.75838 1.05968 1.03822 1.44080 1.07253 1.05154 1.53427 1.22645 0.90634 0.92253 1.06497 1.21177 0.97009 0.94628 1.11103 1.21609 0.93906 0.96365 1.05271 1.20035 0.92060 0.86959 1.20298 1.17294 0.80558 0.84396 0.79614 1.90759 1.33716 1.80588 1.41505 1.47815 1.35694 1.11437 1.37254 1.21176 0.88617 1.04179 0.88624 1.21368 1.01873 0.96046 0.96159 1.21772 0.97562 0.95762 0.94640 0.87759 1.21389 0.88951 0.96344 0.92388 1.44531 1.09254 1.77456 1.03882 1.19450 0.97006 1.36832 0.83877 0.90089 1.25646 0.95730 1.02258 1.02354 1.70164 1.02270 1.53288 1.34256 0.85146 0.76428 0.78144 0.79591 1.20452 1.22104 1.20082 1.21150 0.89528 0.98110 0.85715 1.22249 0.95430 0.99104 0.94666 0.90432 1.21707 0.98558 1.00613 0.94305 1.22266 1.00197 0.81008 0.96298 0.90713 0.86050 0.90805 0.78197 0.81648 0.82256 0.89078 0.87849 0.89861 0.93923 0.95618 0.95906 0.94570 0.93337 1.00652 0.92776 0.92227 0.87608 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 10.88 127.77 1.39 2.50 16 2 N -0.43 -9.16 3.16 -534.30 -1.69 -10.85 16 3 C 0.01 0.23 11.37 83.48 0.95 1.18 16 4 C -0.22 -3.57 10.81 22.01 0.24 -3.34 16 5 C -0.15 -2.91 8.55 22.57 0.19 -2.72 16 6 C -0.08 -2.02 6.10 40.35 0.25 -1.77 16 7 C 0.59 17.38 7.34 86.44 0.63 18.02 16 8 O -0.58 -20.78 15.58 -4.32 -0.07 -20.85 16 9 N -0.59 -15.29 2.61 -828.51 -2.17 -17.46 16 10 C 0.10 2.09 5.31 86.51 0.46 2.55 16 11 C -0.12 -3.17 4.77 29.57 0.14 -3.02 16 12 C -0.08 -2.41 2.78 -10.35 -0.03 -2.44 16 13 H 0.10 2.51 7.68 -2.39 -0.02 2.49 16 14 C 0.13 5.36 6.82 86.50 0.59 5.95 16 15 N -0.63 -32.51 3.38 -698.25 -2.36 -34.87 16 16 C -0.24 -13.81 10.25 84.03 0.86 -12.95 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 18 C -0.07 -3.89 5.48 84.86 0.47 -3.42 16 19 N -0.95 -58.00 10.16 21.65 0.22 -57.78 16 20 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 24 C 0.18 9.01 5.13 86.75 0.45 9.45 16 25 C -0.09 -3.39 2.93 -9.86 -0.03 -3.42 16 26 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 27 C -0.11 -3.63 4.50 30.19 0.14 -3.49 16 28 C 0.12 3.20 6.17 85.76 0.53 3.73 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.12 1.26 8.12 -2.39 -0.02 1.24 16 31 H 0.07 1.67 6.92 -2.39 -0.02 1.66 16 32 H 0.20 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.16 2.55 7.32 -2.91 -0.02 2.53 16 35 H 0.09 1.53 7.68 -2.39 -0.02 1.51 16 36 H 0.10 2.05 4.17 -2.38 -0.01 2.04 16 37 H 0.08 2.11 7.53 -2.39 -0.02 2.09 16 38 H 0.04 1.45 5.86 -2.39 -0.01 1.44 16 39 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.02 0.91 7.40 -2.39 -0.02 0.89 16 41 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.05 2.80 6.19 -2.39 -0.01 2.79 16 43 H -0.02 -1.37 7.72 -2.39 -0.02 -1.39 16 44 H 0.05 1.95 5.47 -2.39 -0.01 1.94 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.11 2.23 7.81 -2.39 -0.02 2.22 16 47 H 0.08 2.30 7.31 -2.38 -0.02 2.28 16 Total: -1.00 -75.69 356.96 4.15 -71.53 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.97 Total: 15.18 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 7.22 Total: 6.79 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -5.99 Total: -120.95 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.07 Total: -20.85 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -75.69 4.15 -71.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946483429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.152 kcal (2) G-P(sol) polarization free energy of solvation -75.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds