Wall clock time and date at job start Tue Mar 31 2020 11:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34781 * 119.99872 * 2 1 4 4 O 1.21281 * 119.99826 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99950 * 0.02562 * 3 2 1 6 6 C 1.50697 * 109.46851 * 179.97438 * 5 3 2 7 7 C 1.38682 * 120.42011 * 90.00265 * 6 5 3 8 8 C 1.38621 * 118.41924 * 179.97438 * 7 6 5 9 9 C 1.38224 * 119.16455 * 359.97438 * 8 7 6 10 10 N 1.31853 * 120.76400 * 359.97438 * 9 8 7 11 11 C 1.31886 * 121.72516 * 0.02562 * 10 9 8 12 12 C 1.46500 * 119.99967 * 180.02562 * 2 1 3 13 13 H 1.09000 * 110.20984 * 181.93123 * 12 2 1 14 14 C 1.50124 * 110.25004 * 304.01726 * 12 2 1 15 15 C 1.54840 * 110.81666 * 216.65474 * 14 12 2 16 16 C 1.54902 * 110.14216 * 321.13545 * 15 14 12 17 17 N 1.43431 * 116.07757 * 318.63900 * 16 15 14 18 18 C 1.36931 * 120.53516 * 271.54200 * 17 16 15 19 19 H 1.07999 * 120.00546 * 336.74640 * 18 17 16 20 20 C 1.38821 * 119.99942 * 156.75080 * 18 17 16 21 21 N 1.31626 * 119.99483 * 340.40194 * 20 18 17 22 22 Si 1.86798 * 120.00363 * 160.40673 * 20 18 17 23 23 H 1.48503 * 109.46696 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47278 * 119.99480 * 22 20 18 25 25 H 1.48494 * 109.47088 * 239.99768 * 22 20 18 26 26 C 1.50170 * 118.92529 * 91.57029 * 17 16 15 27 27 C 1.46236 * 107.53284 * 289.58709 * 26 17 16 28 28 H 1.09009 * 109.47172 * 89.99703 * 1 2 3 29 29 H 1.09001 * 109.47539 * 209.99257 * 1 2 3 30 30 H 1.09002 * 109.47660 * 329.99826 * 1 2 3 31 31 H 1.08998 * 109.47465 * 59.99756 * 5 3 2 32 32 H 1.09003 * 109.46745 * 299.99410 * 5 3 2 33 33 H 1.08006 * 120.78531 * 0.24664 * 7 6 5 34 34 H 1.07999 * 120.41333 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.61643 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.62086 * 180.02562 * 11 10 9 37 37 H 1.09005 * 109.20709 * 337.00432 * 14 12 2 38 38 H 1.09007 * 109.20460 * 96.30949 * 14 12 2 39 39 H 1.08996 * 109.35861 * 200.92669 * 15 14 12 40 40 H 1.09001 * 109.35632 * 81.33836 * 15 14 12 41 41 H 1.09003 * 108.15635 * 196.91774 * 16 15 14 42 42 H 1.09000 * 108.15713 * 80.35363 * 16 15 14 43 43 H 0.97000 * 119.99630 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.84344 * 170.07693 * 26 17 16 45 45 H 1.09003 * 109.84724 * 49.09078 * 26 17 16 46 46 H 1.09002 * 108.51946 * 297.17057 * 27 26 17 47 47 H 1.09002 * 108.40318 * 179.56555 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6177 0.0011 7 6 2.8209 4.1520 -1.1946 8 6 3.7207 5.2053 -1.1457 9 6 4.1301 5.6851 0.0843 10 7 3.6744 5.1530 1.2014 11 6 2.8177 4.1503 1.1929 12 6 2.1975 -1.2687 -0.0006 13 1 3.2711 -1.0837 0.0340 14 6 1.7749 -2.1132 1.1665 15 6 2.9796 -2.8957 1.7443 16 6 3.8920 -3.3944 0.5961 17 7 3.2223 -3.9134 -0.5612 18 6 2.8804 -5.2374 -0.6319 19 1 3.4113 -5.9649 -0.0358 20 6 1.8514 -5.6448 -1.4700 21 7 0.9626 -4.7711 -1.8934 22 14 1.7280 -7.4327 -1.9966 23 1 2.8407 -8.2057 -1.3886 24 1 0.4297 -7.9937 -1.5439 25 1 1.8159 -7.5201 -3.4764 26 6 2.9027 -2.9812 -1.6944 27 6 1.8418 -2.0831 -1.2402 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 0.7590 2.5299 0.8908 32 1 0.7584 2.5302 -0.8892 33 1 2.4797 3.7597 -2.1413 34 1 4.0966 5.6460 -2.0572 35 1 4.8306 6.5057 0.1309 36 1 2.4662 3.7407 2.1284 37 1 1.3592 -1.4703 1.9425 38 1 1.0115 -2.8197 0.8401 39 1 2.6154 -3.7508 2.3138 40 1 3.5521 -2.2427 2.4031 41 1 4.5403 -4.1759 0.9925 42 1 4.5238 -2.5646 0.2795 43 1 0.2438 -5.0557 -2.4793 44 1 2.5602 -3.5519 -2.5576 45 1 3.7883 -2.4036 -1.9594 46 1 0.9550 -2.6777 -1.0211 47 1 1.6038 -1.3941 -2.0507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948300084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:24 Heat of formation + Delta-G solvation = 33.312694 kcal Electronic energy + Delta-G solvation = -27368.327654 eV Core-core repulsion = 23745.145232 eV Total energy + Delta-G solvation = -3623.182422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.55442 -39.62495 -37.67924 -35.21450 -33.73060 -32.76140 -32.02447 -31.21064 -30.54462 -28.12088 -26.79806 -25.98825 -24.01873 -23.68304 -23.08360 -22.43709 -20.02251 -19.42305 -18.47439 -17.21779 -16.98166 -16.71667 -16.56396 -15.85217 -15.23810 -15.06345 -14.84156 -14.09520 -13.81887 -13.76995 -13.68290 -13.37108 -13.17620 -13.15621 -13.05539 -12.79838 -12.26582 -12.19688 -11.93336 -11.76938 -11.63732 -11.33484 -11.22466 -10.78761 -10.74130 -10.26352 -10.15527 -9.96809 -9.94407 -9.80766 -9.60496 -9.52100 -9.45333 -9.29361 -9.02046 -8.51471 -8.19629 -6.72757 -5.81035 -3.19034 0.98069 1.18611 2.80778 3.23503 3.35981 3.44890 3.47225 3.75039 4.28627 4.50076 4.54428 4.64160 4.75402 4.84371 4.88109 5.14745 5.23965 5.27893 5.33774 5.40168 5.50063 5.54640 5.62756 5.65799 5.77460 5.80495 5.89559 5.97437 6.11820 6.18543 6.28651 6.31994 6.52466 6.53284 6.57175 6.62599 6.87418 6.90486 6.93789 7.06150 7.12871 7.23358 7.50430 7.71761 7.74207 7.85793 7.92357 8.40186 8.41956 9.17886 9.85864 10.39441 11.26565 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.002975 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.652478 B = 9410.595496 C = 9536.682370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.603 5.603 3 C 0.511 3.489 4 O -0.538 6.538 5 C -0.099 4.099 6 C -0.112 4.112 7 C -0.062 4.062 8 C -0.172 4.172 9 C 0.092 3.908 10 N -0.485 5.485 11 C 0.112 3.888 12 C 0.141 3.859 13 H 0.097 0.903 14 C -0.112 4.112 15 C -0.139 4.139 16 C 0.154 3.846 17 N -0.589 5.589 18 C -0.243 4.243 19 H 0.068 0.932 20 C 0.000 4.000 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.293 1.293 25 H -0.290 1.290 26 C 0.168 3.832 27 C -0.132 4.132 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.251 0.749 44 H 0.092 0.908 45 H 0.007 0.993 46 H 0.105 0.895 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 17.508 2.336 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.335 5.335 3 C 0.298 3.702 4 O -0.415 6.415 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.088 4.088 8 C -0.191 4.191 9 C -0.065 4.065 10 N -0.194 5.194 11 C -0.045 4.045 12 C 0.039 3.961 13 H 0.115 0.885 14 C -0.150 4.150 15 C -0.181 4.181 16 C 0.025 3.975 17 N -0.310 5.310 18 C -0.373 4.373 19 H 0.085 0.915 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.217 1.217 26 C 0.044 3.956 27 C -0.171 4.171 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.169 0.831 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.111 0.889 45 H 0.025 0.975 46 H 0.123 0.877 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.664 17.773 3.015 18.104 hybrid contribution -0.751 -1.333 -1.120 1.896 sum -2.415 16.440 1.895 16.724 Atomic orbital electron populations 1.21760 0.80072 1.02879 1.01982 1.48095 1.06839 1.06295 1.72296 1.20361 0.88074 0.84929 0.76865 1.90710 1.13829 1.87203 1.49793 1.20661 0.97347 0.90600 1.05295 1.20351 0.99307 0.97099 0.94646 1.21453 0.94865 0.94362 0.98105 1.22095 0.99170 0.98242 0.99640 1.22728 0.97441 0.98418 0.87879 1.67672 1.10077 1.10141 1.31462 1.22575 0.92668 0.91918 0.97332 1.20658 0.97045 0.80937 0.97466 0.88535 1.21748 0.99468 0.97733 0.96072 1.22813 0.97511 0.98444 0.99319 1.20429 0.93173 0.96091 0.87800 1.44256 1.68541 1.06139 1.12042 1.19274 1.11502 0.83071 1.23423 0.91462 1.24873 0.95342 0.97329 1.02189 1.69967 1.14158 1.33030 1.37652 0.86264 0.77271 0.85213 0.78269 1.20449 1.21979 1.21732 1.20108 0.92714 0.90286 0.92493 1.21332 1.04348 0.97086 0.94368 0.92478 0.90426 0.91747 0.87797 0.87877 0.84998 0.84841 0.82942 0.83104 0.94257 0.90452 0.92811 0.93745 0.94870 0.95261 0.93918 0.88945 0.97529 0.87728 0.95341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.56 59.84 0.57 1.46 16 2 N -0.60 -9.19 2.64 -175.86 -0.46 -9.65 16 3 C 0.51 7.74 7.67 -10.98 -0.08 7.66 16 4 O -0.54 -10.46 15.39 5.56 0.09 -10.38 16 5 C -0.10 -1.02 4.41 -29.04 -0.13 -1.14 16 6 C -0.11 -1.30 4.39 -104.48 -0.46 -1.76 16 7 C -0.06 -0.67 9.86 -39.28 -0.39 -1.06 16 8 C -0.17 -1.69 10.11 -39.44 -0.40 -2.09 16 9 C 0.09 0.99 11.18 -17.55 -0.20 0.79 16 10 N -0.49 -6.27 10.36 -13.25 -0.14 -6.40 16 11 C 0.11 1.37 10.86 -17.55 -0.19 1.18 16 12 C 0.14 2.63 2.30 -69.60 -0.16 2.47 16 13 H 0.10 2.05 5.12 -51.93 -0.27 1.78 16 14 C -0.11 -2.08 4.26 -27.19 -0.12 -2.20 16 15 C -0.14 -2.67 6.41 -24.76 -0.16 -2.83 16 16 C 0.15 3.31 5.17 -4.66 -0.02 3.28 16 17 N -0.59 -14.33 2.60 -175.08 -0.46 -14.78 16 18 C -0.24 -6.44 9.63 -15.06 -0.14 -6.58 16 19 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 20 C 0.00 0.00 4.91 -17.42 -0.09 -0.08 16 21 N -0.90 -24.01 9.43 55.49 0.52 -23.49 16 22 Si 0.90 21.13 29.60 -169.99 -5.03 16.10 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.17 3.93 5.24 -5.20 -0.03 3.90 16 27 C -0.13 -2.75 4.25 -30.19 -0.13 -2.88 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.08 0.96 7.09 -51.93 -0.37 0.60 16 30 H 0.06 0.52 6.44 -51.93 -0.33 0.19 16 31 H 0.10 0.81 7.35 -51.93 -0.38 0.43 16 32 H 0.10 0.85 8.06 -51.93 -0.42 0.43 16 33 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.04 0.66 7.76 -51.93 -0.40 0.25 16 38 H 0.08 1.64 6.83 -51.92 -0.35 1.29 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 42 H 0.03 0.62 6.89 -51.93 -0.36 0.26 16 43 H 0.25 6.54 8.31 -40.82 -0.34 6.21 16 44 H 0.09 2.39 6.05 -51.93 -0.31 2.07 16 45 H 0.01 0.15 8.12 -51.93 -0.42 -0.27 16 46 H 0.10 2.44 5.29 -51.93 -0.27 2.16 16 47 H 0.03 0.57 8.02 -51.93 -0.42 0.15 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -31.25 365.43 -9.32 -40.57 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.24 Total: 2.42 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.12 Total: 0.11 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.53 Total: -54.33 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.25 -9.32 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948300084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.885 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds