Wall clock time and date at job start Tue Mar 31 2020 11:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34781 * 119.99872 * 2 1 4 4 O 1.21281 * 119.99826 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99950 * 0.02562 * 3 2 1 6 6 C 1.50697 * 109.46851 * 179.97438 * 5 3 2 7 7 C 1.38682 * 120.42011 * 90.00265 * 6 5 3 8 8 C 1.38621 * 118.41924 * 179.97438 * 7 6 5 9 9 C 1.38224 * 119.16455 * 359.97438 * 8 7 6 10 10 N 1.31853 * 120.76400 * 359.97438 * 9 8 7 11 11 C 1.31886 * 121.72516 * 0.02562 * 10 9 8 12 12 C 1.46500 * 119.99967 * 180.02562 * 2 1 3 13 13 H 1.09000 * 110.20984 * 181.93123 * 12 2 1 14 14 C 1.50124 * 110.25004 * 304.01726 * 12 2 1 15 15 C 1.54840 * 110.81666 * 216.65474 * 14 12 2 16 16 C 1.54902 * 110.14216 * 321.13545 * 15 14 12 17 17 N 1.43431 * 116.07757 * 318.63900 * 16 15 14 18 18 C 1.36931 * 120.53516 * 271.54200 * 17 16 15 19 19 H 1.07999 * 120.00546 * 336.74640 * 18 17 16 20 20 C 1.38821 * 119.99942 * 156.75080 * 18 17 16 21 21 N 1.31626 * 119.99483 * 340.40194 * 20 18 17 22 22 Si 1.86798 * 120.00363 * 160.40673 * 20 18 17 23 23 H 1.48503 * 109.46696 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47278 * 119.99480 * 22 20 18 25 25 H 1.48494 * 109.47088 * 239.99768 * 22 20 18 26 26 C 1.50170 * 118.92529 * 91.57029 * 17 16 15 27 27 C 1.46236 * 107.53284 * 289.58709 * 26 17 16 28 28 H 1.09009 * 109.47172 * 89.99703 * 1 2 3 29 29 H 1.09001 * 109.47539 * 209.99257 * 1 2 3 30 30 H 1.09002 * 109.47660 * 329.99826 * 1 2 3 31 31 H 1.08998 * 109.47465 * 59.99756 * 5 3 2 32 32 H 1.09003 * 109.46745 * 299.99410 * 5 3 2 33 33 H 1.08006 * 120.78531 * 0.24664 * 7 6 5 34 34 H 1.07999 * 120.41333 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.61643 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.62086 * 180.02562 * 11 10 9 37 37 H 1.09005 * 109.20709 * 337.00432 * 14 12 2 38 38 H 1.09007 * 109.20460 * 96.30949 * 14 12 2 39 39 H 1.08996 * 109.35861 * 200.92669 * 15 14 12 40 40 H 1.09001 * 109.35632 * 81.33836 * 15 14 12 41 41 H 1.09003 * 108.15635 * 196.91774 * 16 15 14 42 42 H 1.09000 * 108.15713 * 80.35363 * 16 15 14 43 43 H 0.97000 * 119.99630 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.84344 * 170.07693 * 26 17 16 45 45 H 1.09003 * 109.84724 * 49.09078 * 26 17 16 46 46 H 1.09002 * 108.51946 * 297.17057 * 27 26 17 47 47 H 1.09002 * 108.40318 * 179.56555 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6177 0.0011 7 6 2.8209 4.1520 -1.1946 8 6 3.7207 5.2053 -1.1457 9 6 4.1301 5.6851 0.0843 10 7 3.6744 5.1530 1.2014 11 6 2.8177 4.1503 1.1929 12 6 2.1975 -1.2687 -0.0006 13 1 3.2711 -1.0837 0.0340 14 6 1.7749 -2.1132 1.1665 15 6 2.9796 -2.8957 1.7443 16 6 3.8920 -3.3944 0.5961 17 7 3.2223 -3.9134 -0.5612 18 6 2.8804 -5.2374 -0.6319 19 1 3.4113 -5.9649 -0.0358 20 6 1.8514 -5.6448 -1.4700 21 7 0.9626 -4.7711 -1.8934 22 14 1.7280 -7.4327 -1.9966 23 1 2.8407 -8.2057 -1.3886 24 1 0.4297 -7.9937 -1.5439 25 1 1.8159 -7.5201 -3.4764 26 6 2.9027 -2.9812 -1.6944 27 6 1.8418 -2.0831 -1.2402 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 0.7590 2.5299 0.8908 32 1 0.7584 2.5302 -0.8892 33 1 2.4797 3.7597 -2.1413 34 1 4.0966 5.6460 -2.0572 35 1 4.8306 6.5057 0.1309 36 1 2.4662 3.7407 2.1284 37 1 1.3592 -1.4703 1.9425 38 1 1.0115 -2.8197 0.8401 39 1 2.6154 -3.7508 2.3138 40 1 3.5521 -2.2427 2.4031 41 1 4.5403 -4.1759 0.9925 42 1 4.5238 -2.5646 0.2795 43 1 0.2438 -5.0557 -2.4793 44 1 2.5602 -3.5519 -2.5576 45 1 3.7883 -2.4036 -1.9594 46 1 0.9550 -2.6777 -1.0211 47 1 1.6038 -1.3941 -2.0507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948300084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:23 Heat of formation + Delta-G solvation = 15.898536 kcal Electronic energy + Delta-G solvation = -27369.082788 eV Core-core repulsion = 23745.145232 eV Total energy + Delta-G solvation = -3623.937557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56229 -40.73740 -39.21918 -36.68029 -34.79423 -34.29497 -32.99872 -32.69715 -32.35896 -29.12499 -27.96654 -27.61527 -25.54300 -24.91758 -24.48569 -23.40950 -21.67575 -20.85130 -19.85179 -18.62414 -18.11764 -17.98117 -17.44104 -17.09301 -16.87781 -16.24362 -16.00660 -15.65249 -15.49344 -15.31571 -14.83103 -14.69088 -14.32635 -14.13654 -14.08583 -13.92655 -13.59863 -13.46174 -13.27982 -13.13365 -13.08266 -12.95640 -12.63314 -12.51110 -12.38835 -12.03495 -11.79547 -11.70878 -11.60539 -11.20487 -11.03742 -10.93185 -10.62850 -10.46625 -10.39032 -9.86780 -9.51983 -8.67639 -7.82295 -5.22695 0.17760 0.38371 1.47265 1.51651 1.59851 1.67815 2.09891 2.54887 2.90969 3.31027 3.52003 3.57693 3.70210 3.80618 3.93569 4.04363 4.10065 4.13428 4.17651 4.22009 4.37655 4.49236 4.55131 4.57285 4.60279 4.64480 4.71999 4.81523 4.84731 4.88537 4.90884 4.98734 5.09530 5.18665 5.20665 5.21939 5.32871 5.33759 5.35907 5.50437 5.60510 5.68947 5.76316 5.81595 6.07902 6.42023 6.55033 7.04903 7.17518 7.24604 7.89238 8.41626 9.22770 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.002975 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.652478 B = 9410.595496 C = 9536.682370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.605 5.605 3 C 0.507 3.493 4 O -0.587 6.587 5 C -0.086 4.086 6 C -0.124 4.124 7 C -0.075 4.075 8 C -0.171 4.171 9 C 0.080 3.920 10 N -0.515 5.515 11 C 0.093 3.907 12 C 0.154 3.846 13 H 0.072 0.928 14 C -0.100 4.100 15 C -0.133 4.133 16 C 0.151 3.849 17 N -0.600 5.600 18 C -0.260 4.260 19 H 0.061 0.939 20 C -0.039 4.039 21 N -0.914 5.914 22 Si 0.957 3.043 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.171 3.829 27 C -0.115 4.115 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.147 0.853 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.248 0.752 44 H 0.064 0.936 45 H 0.007 0.993 46 H 0.083 0.917 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 18.983 2.522 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.336 5.336 3 C 0.297 3.703 4 O -0.468 6.468 5 C -0.126 4.126 6 C -0.126 4.126 7 C -0.101 4.101 8 C -0.191 4.191 9 C -0.077 4.077 10 N -0.223 5.223 11 C -0.063 4.063 12 C 0.051 3.949 13 H 0.090 0.910 14 C -0.138 4.138 15 C -0.175 4.175 16 C 0.023 3.977 17 N -0.323 5.323 18 C -0.390 4.390 19 H 0.078 0.922 20 C -0.235 4.235 21 N -0.559 5.559 22 Si 0.787 3.213 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.047 3.953 27 C -0.154 4.154 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.165 0.835 34 H 0.179 0.821 35 H 0.194 0.806 36 H 0.177 0.823 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.025 0.975 46 H 0.101 0.899 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.732 19.264 3.216 19.720 hybrid contribution -0.358 -1.755 -1.210 2.161 sum -3.090 17.509 2.006 17.893 Atomic orbital electron populations 1.22020 0.77545 1.04561 1.02985 1.48114 1.08303 1.05100 1.72130 1.21199 0.87727 0.86087 0.75275 1.90692 1.16234 1.87931 1.51922 1.20689 0.96915 0.86855 1.08119 1.20519 0.99864 0.97548 0.94706 1.21813 0.95027 0.94671 0.98632 1.22440 0.98431 0.97735 1.00478 1.23224 0.97660 0.98950 0.87823 1.67665 1.10927 1.10969 1.32770 1.22832 0.93041 0.92253 0.98192 1.20181 0.96185 0.82454 0.96107 0.90951 1.21580 0.98356 0.97304 0.96603 1.22719 0.97497 0.98763 0.98488 1.20498 0.93417 0.95966 0.87800 1.44335 1.68887 1.05866 1.13179 1.19408 1.11653 0.84044 1.23898 0.92156 1.25467 0.95241 1.00450 1.02326 1.70093 1.14160 1.34097 1.37593 0.85372 0.76983 0.81571 0.77401 1.20162 1.22001 1.21993 1.19993 0.93375 0.90246 0.91644 1.21050 1.02274 0.96592 0.95528 0.91851 0.91439 0.87408 0.84652 0.85075 0.83511 0.82067 0.80595 0.82251 0.91934 0.93154 0.93203 0.91641 0.95111 0.95233 0.94216 0.91721 0.97522 0.89876 0.95058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 9.56 127.77 1.22 2.65 16 2 N -0.61 -17.32 2.64 -828.69 -2.19 -19.51 16 3 C 0.51 14.39 7.67 87.66 0.67 15.06 16 4 O -0.59 -22.50 15.39 -3.03 -0.05 -22.54 16 5 C -0.09 -1.49 4.41 29.10 0.13 -1.36 16 6 C -0.12 -2.63 4.39 -19.77 -0.09 -2.72 16 7 C -0.08 -1.48 9.86 22.47 0.22 -1.26 16 8 C -0.17 -3.02 10.11 22.36 0.23 -2.79 16 9 C 0.08 1.59 11.18 84.69 0.95 2.54 16 10 N -0.51 -12.82 10.36 -195.85 -2.03 -14.85 16 11 C 0.09 2.17 10.86 84.67 0.92 3.09 16 12 C 0.15 5.69 2.30 43.91 0.10 5.80 16 13 H 0.07 3.08 5.12 -2.39 -0.01 3.07 16 14 C -0.10 -3.65 4.26 30.30 0.13 -3.53 16 15 C -0.13 -5.04 6.41 31.87 0.20 -4.84 16 16 C 0.15 6.55 5.17 87.60 0.45 7.00 16 17 N -0.60 -29.82 2.60 -707.83 -1.84 -31.67 16 18 C -0.26 -14.00 9.63 84.04 0.81 -13.19 16 19 H 0.06 3.26 7.89 -2.91 -0.02 3.24 16 20 C -0.04 -2.06 4.91 84.86 0.42 -1.64 16 21 N -0.91 -49.31 9.43 21.66 0.20 -49.11 16 22 Si 0.96 43.82 29.60 68.60 2.03 45.85 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 C 0.17 8.22 5.24 83.58 0.44 8.65 16 27 C -0.11 -4.84 4.25 28.35 0.12 -4.72 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.07 1.53 7.09 -2.39 -0.02 1.52 16 30 H 0.11 1.24 6.44 -2.39 -0.02 1.23 16 31 H 0.14 1.50 7.35 -2.39 -0.02 1.48 16 32 H 0.13 1.57 8.06 -2.39 -0.02 1.55 16 33 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.06 1.98 7.76 -2.38 -0.02 1.96 16 38 H 0.05 2.13 6.83 -2.38 -0.02 2.12 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.03 1.32 7.99 -2.39 -0.02 1.30 16 42 H 0.03 1.26 6.89 -2.39 -0.02 1.24 16 43 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 44 H 0.06 3.45 6.05 -2.39 -0.01 3.43 16 45 H 0.01 0.31 8.12 -2.39 -0.02 0.29 16 46 H 0.08 3.93 5.29 -2.39 -0.01 3.92 16 47 H 0.03 1.26 8.02 -2.39 -0.02 1.24 16 Total: -1.00 -69.47 365.43 4.01 -65.46 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.96 Total: 17.62 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 6.92 Total: 8.75 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -5.85 Total: -115.14 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -69.47 4.01 -65.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948300084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.362 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds