Wall clock time and date at job start Tue Mar 31 2020 11:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 120.00360 * 2 1 4 4 O 1.21276 * 120.00104 * 180.02562 * 3 2 1 5 5 C 1.50710 * 119.99776 * 0.02562 * 3 2 1 6 6 C 1.50704 * 109.46824 * 179.97438 * 5 3 2 7 7 C 1.38668 * 120.41484 * 90.00213 * 6 5 3 8 8 C 1.38630 * 118.41669 * 179.97438 * 7 6 5 9 9 C 1.38220 * 119.16404 * 0.02562 * 8 7 6 10 10 N 1.31860 * 120.76124 * 359.97438 * 9 8 7 11 11 C 1.31885 * 121.72723 * 359.71118 * 10 9 8 12 12 C 1.46500 * 119.99818 * 180.02562 * 2 1 3 13 13 H 1.08993 * 108.44832 * 182.30548 * 12 2 1 14 14 C 1.52573 * 108.51541 * 64.75893 * 12 2 1 15 15 C 1.50819 * 109.35874 * 153.73100 * 14 12 2 16 16 C 1.53948 * 110.09523 * 91.89971 * 15 14 12 17 17 N 1.47600 * 112.14555 * 319.41190 * 16 15 14 18 18 C 1.36945 * 118.64305 * 137.86666 * 17 16 15 19 19 H 1.08001 * 119.99651 * 206.50949 * 18 17 16 20 20 C 1.38812 * 120.00105 * 26.50923 * 18 17 16 21 21 N 1.31626 * 119.99668 * 15.67373 * 20 18 17 22 22 Si 1.86797 * 119.99909 * 195.67544 * 20 18 17 23 23 H 1.48497 * 109.47291 * 90.00159 * 22 20 18 24 24 H 1.48507 * 109.46920 * 210.00201 * 22 20 18 25 25 H 1.48497 * 109.47020 * 329.99733 * 22 20 18 26 26 C 1.44571 * 122.71311 * 317.89221 * 17 16 15 27 27 C 1.47098 * 108.51333 * 299.99797 * 12 2 1 28 28 H 1.09007 * 109.46900 * 269.99857 * 1 2 3 29 29 H 1.08998 * 109.47085 * 29.99329 * 1 2 3 30 30 H 1.08993 * 109.47416 * 149.99901 * 1 2 3 31 31 H 1.08999 * 109.46968 * 299.99683 * 5 3 2 32 32 H 1.08993 * 109.46734 * 60.00085 * 5 3 2 33 33 H 1.07996 * 120.79224 * 359.97438 * 7 6 5 34 34 H 1.08003 * 120.41622 * 180.02562 * 8 7 6 35 35 H 1.08003 * 119.62253 * 180.02562 * 9 8 7 36 36 H 1.07995 * 119.61658 * 180.30743 * 11 10 9 37 37 H 1.09000 * 109.49490 * 273.70938 * 14 12 2 38 38 H 1.09007 * 109.48634 * 33.75048 * 14 12 2 39 39 H 1.08999 * 109.38810 * 331.69934 * 15 14 12 40 40 H 1.08999 * 109.34597 * 212.08119 * 15 14 12 41 41 H 1.09007 * 108.94934 * 198.72007 * 16 15 14 42 42 H 1.09009 * 108.94766 * 80.10083 * 16 15 14 43 43 H 0.96996 * 119.99260 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.45476 * 210.74333 * 26 17 16 45 45 H 1.09005 * 109.44945 * 330.68871 * 26 17 16 46 46 H 1.08998 * 109.32686 * 63.79111 * 27 12 2 47 47 H 1.09002 * 109.32602 * 304.31863 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1670 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3648 3.6177 0.0011 7 6 2.8210 4.1518 -1.1945 8 6 3.7210 5.2051 -1.1457 9 6 4.1312 5.6842 0.0842 10 7 3.6762 5.1515 1.2013 11 6 2.8148 4.1528 1.1930 12 6 2.1975 -1.2687 -0.0006 13 1 3.2646 -1.0510 0.0411 14 6 1.9054 -1.9962 -1.3095 15 6 3.0576 -2.9113 -1.6408 16 6 2.8023 -4.3144 -1.0611 17 7 2.2085 -4.2590 0.2891 18 6 1.1927 -5.1248 0.5955 19 1 0.4684 -4.8614 1.3521 20 6 1.0939 -6.3410 -0.0665 21 7 2.1189 -6.8028 -0.7509 22 14 -0.4938 -7.3219 0.0141 23 1 -1.3804 -6.9217 -1.1079 24 1 -0.1862 -8.7710 -0.0907 25 1 -1.1768 -7.0530 1.3050 26 6 2.6545 -3.3281 1.3012 27 6 1.8270 -2.0225 1.2071 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7585 2.5302 -0.8892 32 1 0.7592 2.5298 0.8908 33 1 2.4833 3.7567 -2.1411 34 1 4.0969 5.6459 -2.0573 35 1 4.8318 6.5048 0.1309 36 1 2.4607 3.7456 2.1284 37 1 0.9933 -2.5835 -1.2036 38 1 1.7778 -1.2674 -2.1100 39 1 3.9756 -2.5059 -1.2151 40 1 3.1635 -2.9812 -2.7233 41 1 3.7482 -4.8538 -1.0099 42 1 2.1251 -4.8533 -1.7238 43 1 2.0499 -7.6528 -1.2131 44 1 2.5205 -3.7724 2.2875 45 1 3.7093 -3.1009 1.1459 46 1 0.7662 -2.2697 1.1668 47 1 2.0187 -1.4095 2.0878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948300085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:28 Heat of formation + Delta-G solvation = 25.874582 kcal Electronic energy + Delta-G solvation = -27054.386380 eV Core-core repulsion = 23430.881417 eV Total energy + Delta-G solvation = -3623.504963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.66609 -39.77583 -37.72086 -35.36689 -33.84502 -32.84639 -32.07087 -31.66572 -30.41015 -28.09851 -26.88148 -25.93175 -24.20143 -23.75086 -23.35872 -22.41564 -20.02754 -19.26087 -18.95795 -17.29037 -17.12026 -16.74995 -16.63249 -15.98286 -15.29042 -15.17548 -15.09475 -14.17808 -13.92197 -13.80701 -13.60386 -13.42932 -13.32524 -13.23187 -13.08994 -12.86100 -12.49021 -12.39052 -12.12182 -11.96165 -11.74315 -11.37431 -11.23266 -10.86468 -10.60745 -10.48216 -10.23315 -10.15876 -10.00568 -9.84237 -9.76154 -9.65903 -9.61426 -9.57975 -9.09076 -8.48611 -8.39548 -6.67494 -5.78651 -3.22751 0.91340 1.11769 2.68346 3.09630 3.35106 3.42391 3.43559 3.67484 4.21818 4.46794 4.48459 4.56787 4.62604 4.77614 4.80052 5.07422 5.11865 5.20343 5.23295 5.34156 5.39973 5.45105 5.51401 5.56563 5.64402 5.71054 5.78529 5.90359 6.01616 6.02721 6.04720 6.20284 6.32829 6.46492 6.50601 6.54310 6.64200 6.76475 6.80447 6.84576 6.93156 6.98465 7.44107 7.54036 7.71430 7.79818 7.81848 8.26424 8.46483 9.23556 9.90425 10.35944 11.28622 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.002750 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.302444 B =10178.195940 C =10379.367535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.510 3.490 4 O -0.538 6.538 5 C -0.098 4.098 6 C -0.113 4.113 7 C -0.062 4.062 8 C -0.172 4.172 9 C 0.093 3.907 10 N -0.485 5.485 11 C 0.113 3.887 12 C 0.154 3.846 13 H 0.087 0.913 14 C -0.108 4.108 15 C -0.141 4.141 16 C 0.178 3.822 17 N -0.590 5.590 18 C -0.258 4.258 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.162 3.838 27 C -0.152 4.152 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.074 0.926 43 H 0.253 0.747 44 H 0.050 0.950 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 21.315 -1.566 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.344 5.344 3 C 0.298 3.702 4 O -0.415 6.415 5 C -0.139 4.139 6 C -0.115 4.115 7 C -0.089 4.089 8 C -0.191 4.191 9 C -0.064 4.064 10 N -0.193 5.193 11 C -0.044 4.044 12 C 0.053 3.947 13 H 0.105 0.895 14 C -0.147 4.147 15 C -0.181 4.181 16 C 0.053 3.947 17 N -0.311 5.311 18 C -0.388 4.388 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.548 5.548 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.033 3.967 27 C -0.193 4.193 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.169 0.831 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.005 21.467 -0.857 21.577 hybrid contribution -1.268 -0.967 -0.927 1.844 sum -3.273 20.500 -1.783 20.836 Atomic orbital electron populations 1.21775 0.80001 1.03145 1.01887 1.48335 1.07009 1.06411 1.72627 1.20403 0.88078 0.85021 0.76728 1.90713 1.13848 1.87186 1.49767 1.20661 0.97348 0.90544 1.05332 1.20341 0.99387 0.97134 0.94661 1.21437 0.94935 0.94437 0.98048 1.22099 0.99140 0.98245 0.99658 1.22744 0.97427 0.98354 0.87863 1.67681 1.09984 1.10161 1.31464 1.22590 0.92581 0.91922 0.97345 1.20175 0.97194 0.81231 0.96078 0.89521 1.21253 1.00986 0.97605 0.94809 1.21975 0.97024 0.99190 0.99877 1.21020 0.97858 0.90007 0.85784 1.43673 1.40996 1.38660 1.07768 1.19202 1.02981 0.95728 1.20854 0.91726 1.25040 0.97152 0.96271 1.00972 1.70078 1.28131 1.19937 1.36609 0.86327 0.83499 0.79311 0.77833 1.21540 1.21811 1.20493 1.20565 0.94566 0.88508 0.93042 1.21845 1.02737 0.99189 0.95562 0.92532 0.91622 0.90297 0.87885 0.87726 0.85058 0.84826 0.82898 0.83058 0.90468 0.93615 0.93457 0.92751 0.95738 0.90746 0.93684 0.93212 0.94804 0.91724 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 9.20 59.85 0.55 1.31 16 2 N -0.61 -8.28 2.59 -177.48 -0.46 -8.74 16 3 C 0.51 7.03 7.67 -10.98 -0.08 6.95 16 4 O -0.54 -9.74 15.33 5.56 0.09 -9.65 16 5 C -0.10 -0.91 4.41 -29.03 -0.13 -1.04 16 6 C -0.11 -1.22 4.39 -104.48 -0.46 -1.68 16 7 C -0.06 -0.62 9.86 -39.28 -0.39 -1.01 16 8 C -0.17 -1.56 10.11 -39.44 -0.40 -1.96 16 9 C 0.09 0.94 11.18 -17.55 -0.20 0.74 16 10 N -0.48 -5.99 10.36 -13.25 -0.14 -6.12 16 11 C 0.11 1.31 10.86 -17.55 -0.19 1.11 16 12 C 0.15 2.57 1.96 -70.98 -0.14 2.43 16 13 H 0.09 1.65 6.03 -51.93 -0.31 1.33 16 14 C -0.11 -1.87 4.34 -28.04 -0.12 -1.99 16 15 C -0.14 -2.69 5.71 -27.33 -0.16 -2.84 16 16 C 0.18 4.17 4.67 -2.95 -0.01 4.16 16 17 N -0.59 -14.10 2.27 -172.09 -0.39 -14.49 16 18 C -0.26 -6.76 9.44 -15.06 -0.14 -6.90 16 19 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 20 C 0.00 0.12 4.87 -17.43 -0.08 0.03 16 21 N -0.90 -25.69 11.01 55.49 0.61 -25.08 16 22 Si 0.90 21.16 29.58 -169.99 -5.03 16.13 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.16 3.34 5.65 -4.09 -0.02 3.32 16 27 C -0.15 -2.64 4.88 -28.58 -0.14 -2.78 16 28 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.07 0.46 6.44 -51.93 -0.33 0.13 16 30 H 0.08 0.87 7.25 -51.93 -0.38 0.50 16 31 H 0.10 0.72 7.35 -51.93 -0.38 0.34 16 32 H 0.10 0.74 8.06 -51.93 -0.42 0.32 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.08 1.47 7.23 -51.93 -0.38 1.10 16 38 H 0.05 0.73 8.05 -51.92 -0.42 0.31 16 39 H 0.05 0.89 7.31 -51.93 -0.38 0.52 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 42 H 0.07 1.93 6.33 -51.92 -0.33 1.60 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.05 1.04 7.99 -51.93 -0.41 0.62 16 45 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 46 H 0.06 1.16 7.62 -51.93 -0.40 0.76 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -32.41 370.26 -9.33 -41.75 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.48 Total: 0.79 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.11 Total: -0.16 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.38 Total: -54.43 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.41 -9.33 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948300085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.622 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds