Wall clock time and date at job start Tue Mar 31 2020 11:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 120.00360 * 2 1 4 4 O 1.21276 * 120.00104 * 180.02562 * 3 2 1 5 5 C 1.50710 * 119.99776 * 0.02562 * 3 2 1 6 6 C 1.50704 * 109.46824 * 179.97438 * 5 3 2 7 7 C 1.38668 * 120.41484 * 90.00213 * 6 5 3 8 8 C 1.38630 * 118.41669 * 179.97438 * 7 6 5 9 9 C 1.38220 * 119.16404 * 0.02562 * 8 7 6 10 10 N 1.31860 * 120.76124 * 359.97438 * 9 8 7 11 11 C 1.31885 * 121.72723 * 359.71118 * 10 9 8 12 12 C 1.46500 * 119.99818 * 180.02562 * 2 1 3 13 13 H 1.08993 * 108.44832 * 182.30548 * 12 2 1 14 14 C 1.52573 * 108.51541 * 64.75893 * 12 2 1 15 15 C 1.50819 * 109.35874 * 153.73100 * 14 12 2 16 16 C 1.53948 * 110.09523 * 91.89971 * 15 14 12 17 17 N 1.47600 * 112.14555 * 319.41190 * 16 15 14 18 18 C 1.36945 * 118.64305 * 137.86666 * 17 16 15 19 19 H 1.08001 * 119.99651 * 206.50949 * 18 17 16 20 20 C 1.38812 * 120.00105 * 26.50923 * 18 17 16 21 21 N 1.31626 * 119.99668 * 15.67373 * 20 18 17 22 22 Si 1.86797 * 119.99909 * 195.67544 * 20 18 17 23 23 H 1.48497 * 109.47291 * 90.00159 * 22 20 18 24 24 H 1.48507 * 109.46920 * 210.00201 * 22 20 18 25 25 H 1.48497 * 109.47020 * 329.99733 * 22 20 18 26 26 C 1.44571 * 122.71311 * 317.89221 * 17 16 15 27 27 C 1.47098 * 108.51333 * 299.99797 * 12 2 1 28 28 H 1.09007 * 109.46900 * 269.99857 * 1 2 3 29 29 H 1.08998 * 109.47085 * 29.99329 * 1 2 3 30 30 H 1.08993 * 109.47416 * 149.99901 * 1 2 3 31 31 H 1.08999 * 109.46968 * 299.99683 * 5 3 2 32 32 H 1.08993 * 109.46734 * 60.00085 * 5 3 2 33 33 H 1.07996 * 120.79224 * 359.97438 * 7 6 5 34 34 H 1.08003 * 120.41622 * 180.02562 * 8 7 6 35 35 H 1.08003 * 119.62253 * 180.02562 * 9 8 7 36 36 H 1.07995 * 119.61658 * 180.30743 * 11 10 9 37 37 H 1.09000 * 109.49490 * 273.70938 * 14 12 2 38 38 H 1.09007 * 109.48634 * 33.75048 * 14 12 2 39 39 H 1.08999 * 109.38810 * 331.69934 * 15 14 12 40 40 H 1.08999 * 109.34597 * 212.08119 * 15 14 12 41 41 H 1.09007 * 108.94934 * 198.72007 * 16 15 14 42 42 H 1.09009 * 108.94766 * 80.10083 * 16 15 14 43 43 H 0.96996 * 119.99260 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.45476 * 210.74333 * 26 17 16 45 45 H 1.09005 * 109.44945 * 330.68871 * 26 17 16 46 46 H 1.08998 * 109.32686 * 63.79111 * 27 12 2 47 47 H 1.09002 * 109.32602 * 304.31863 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1670 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3648 3.6177 0.0011 7 6 2.8210 4.1518 -1.1945 8 6 3.7210 5.2051 -1.1457 9 6 4.1312 5.6842 0.0842 10 7 3.6762 5.1515 1.2013 11 6 2.8148 4.1528 1.1930 12 6 2.1975 -1.2687 -0.0006 13 1 3.2646 -1.0510 0.0411 14 6 1.9054 -1.9962 -1.3095 15 6 3.0576 -2.9113 -1.6408 16 6 2.8023 -4.3144 -1.0611 17 7 2.2085 -4.2590 0.2891 18 6 1.1927 -5.1248 0.5955 19 1 0.4684 -4.8614 1.3521 20 6 1.0939 -6.3410 -0.0665 21 7 2.1189 -6.8028 -0.7509 22 14 -0.4938 -7.3219 0.0141 23 1 -1.3804 -6.9217 -1.1079 24 1 -0.1862 -8.7710 -0.0907 25 1 -1.1768 -7.0530 1.3050 26 6 2.6545 -3.3281 1.3012 27 6 1.8270 -2.0225 1.2071 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7585 2.5302 -0.8892 32 1 0.7592 2.5298 0.8908 33 1 2.4833 3.7567 -2.1411 34 1 4.0969 5.6459 -2.0573 35 1 4.8318 6.5048 0.1309 36 1 2.4607 3.7456 2.1284 37 1 0.9933 -2.5835 -1.2036 38 1 1.7778 -1.2674 -2.1100 39 1 3.9756 -2.5059 -1.2151 40 1 3.1635 -2.9812 -2.7233 41 1 3.7482 -4.8538 -1.0099 42 1 2.1251 -4.8533 -1.7238 43 1 2.0499 -7.6528 -1.2131 44 1 2.5205 -3.7724 2.2875 45 1 3.7093 -3.1009 1.1459 46 1 0.7662 -2.2697 1.1668 47 1 2.0187 -1.4095 2.0878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948300085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:27 Heat of formation + Delta-G solvation = 7.338046 kcal Electronic energy + Delta-G solvation = -27055.190184 eV Core-core repulsion = 23430.881417 eV Total energy + Delta-G solvation = -3624.308767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60029 -40.76094 -39.17619 -36.79194 -34.85216 -34.25875 -33.34576 -32.83530 -32.04794 -29.01572 -28.00267 -27.48862 -25.77955 -25.01498 -24.49150 -23.36745 -21.35623 -21.01816 -20.08357 -18.56544 -18.15493 -17.99314 -17.43792 -17.20738 -16.89257 -16.31403 -16.00924 -15.78176 -15.36245 -15.25290 -14.91911 -14.61574 -14.27725 -14.16814 -14.08540 -13.94562 -13.88884 -13.61706 -13.24856 -13.09983 -13.01162 -12.89016 -12.71363 -12.44213 -12.35584 -12.07774 -11.93318 -11.77267 -11.57051 -11.39378 -11.36903 -10.92955 -10.62439 -10.43509 -10.39037 -9.87119 -9.59855 -8.65175 -7.82983 -5.29886 0.17384 0.38317 1.48898 1.49802 1.58533 1.67710 2.07520 2.53838 2.90447 3.30965 3.51695 3.62080 3.69693 3.76560 3.92333 3.95260 4.10310 4.11337 4.13386 4.25114 4.41272 4.42929 4.44758 4.49849 4.57169 4.68407 4.73722 4.75010 4.78558 4.89224 4.92095 5.00057 5.06438 5.13054 5.14347 5.20351 5.24887 5.31090 5.33357 5.47822 5.57007 5.64997 5.69256 5.80583 5.81287 6.42904 6.51116 7.04857 7.20321 7.23464 7.95345 8.36461 9.22653 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.002750 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.302444 B =10178.195940 C =10379.367535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.508 3.492 4 O -0.588 6.588 5 C -0.087 4.087 6 C -0.124 4.124 7 C -0.074 4.074 8 C -0.171 4.171 9 C 0.079 3.921 10 N -0.516 5.516 11 C 0.091 3.909 12 C 0.161 3.839 13 H 0.063 0.937 14 C -0.096 4.096 15 C -0.130 4.130 16 C 0.191 3.809 17 N -0.601 5.601 18 C -0.259 4.259 19 H 0.069 0.931 20 C -0.050 4.050 21 N -0.938 5.938 22 Si 0.964 3.036 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.268 1.268 26 C 0.157 3.843 27 C -0.132 4.132 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.176 0.824 36 H 0.158 0.842 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.069 0.931 41 H -0.011 1.011 42 H 0.045 0.955 43 H 0.248 0.752 44 H 0.043 0.957 45 H 0.030 0.970 46 H 0.064 0.936 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 23.581 -1.983 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C 0.297 3.703 4 O -0.468 6.468 5 C -0.126 4.126 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.191 4.191 9 C -0.078 4.078 10 N -0.225 5.225 11 C -0.065 4.065 12 C 0.058 3.942 13 H 0.081 0.919 14 C -0.134 4.134 15 C -0.169 4.169 16 C 0.066 3.934 17 N -0.323 5.323 18 C -0.389 4.389 19 H 0.087 0.913 20 C -0.245 4.245 21 N -0.585 5.585 22 Si 0.793 3.207 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.193 1.193 26 C 0.029 3.971 27 C -0.173 4.173 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.168 0.832 34 H 0.180 0.820 35 H 0.193 0.807 36 H 0.176 0.824 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.007 0.993 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.083 0.917 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.113 23.774 -1.250 24.160 hybrid contribution -0.543 -1.627 -0.766 1.879 sum -4.656 22.147 -2.015 22.721 Atomic orbital electron populations 1.22048 0.77463 1.04585 1.03225 1.48296 1.08431 1.05155 1.72340 1.21169 0.87681 0.86164 0.75240 1.90698 1.16273 1.87894 1.51976 1.20694 0.96876 0.86931 1.08131 1.20528 0.99877 0.97587 0.94633 1.21817 0.94945 0.94601 0.98655 1.22448 0.98429 0.97788 1.00394 1.23222 0.97740 0.98928 0.87892 1.67659 1.10908 1.11068 1.32857 1.22829 0.93066 0.92343 0.98265 1.19787 0.96392 0.82761 0.95238 0.91901 1.21111 0.99087 0.97321 0.95907 1.21825 0.97902 0.96742 1.00472 1.20750 0.95165 0.92023 0.85510 1.43848 1.40832 1.39051 1.08598 1.19510 1.03253 0.95857 1.20301 0.91290 1.25782 0.99922 0.97501 1.01325 1.70249 1.30043 1.20183 1.37992 0.85307 0.79990 0.77164 0.78225 1.21075 1.22737 1.19257 1.20696 0.95045 0.89440 0.91875 1.21558 1.01693 0.97342 0.96671 0.91256 0.87786 0.91336 0.84696 0.85028 0.83199 0.82028 0.80728 0.82449 0.92000 0.91688 0.93504 0.91228 0.99278 0.93603 0.94320 0.93816 0.95158 0.91749 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 9.20 127.77 1.18 2.29 16 2 N -0.61 -14.90 2.59 -833.81 -2.16 -17.05 16 3 C 0.51 12.72 7.67 87.66 0.67 13.39 16 4 O -0.59 -20.71 15.33 -3.02 -0.05 -20.75 16 5 C -0.09 -1.28 4.41 29.11 0.13 -1.15 16 6 C -0.12 -2.39 4.39 -19.77 -0.09 -2.48 16 7 C -0.07 -1.29 9.86 22.47 0.22 -1.07 16 8 C -0.17 -2.74 10.11 22.36 0.23 -2.51 16 9 C 0.08 1.48 11.18 84.68 0.95 2.43 16 10 N -0.52 -12.40 10.36 -195.85 -2.03 -14.43 16 11 C 0.09 2.02 10.86 84.67 0.92 2.94 16 12 C 0.16 5.16 1.96 43.01 0.08 5.25 16 13 H 0.06 2.37 6.03 -2.39 -0.01 2.35 16 14 C -0.10 -3.20 4.34 29.74 0.13 -3.07 16 15 C -0.13 -4.96 5.71 30.21 0.17 -4.78 16 16 C 0.19 9.22 4.67 86.49 0.40 9.62 16 17 N -0.60 -29.26 2.27 -698.36 -1.59 -30.85 16 18 C -0.26 -13.67 9.44 84.03 0.79 -12.88 16 19 H 0.07 3.53 7.88 -2.91 -0.02 3.50 16 20 C -0.05 -2.74 4.87 84.86 0.41 -2.33 16 21 N -0.94 -55.05 11.01 21.65 0.24 -54.82 16 22 Si 0.96 43.82 29.58 68.60 2.03 45.85 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 C 0.16 6.52 5.65 87.37 0.49 7.01 16 27 C -0.13 -4.42 4.88 29.39 0.14 -4.28 16 28 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.10 0.90 6.44 -2.39 -0.02 0.89 16 30 H 0.07 1.30 7.25 -2.39 -0.02 1.28 16 31 H 0.14 1.16 7.35 -2.39 -0.02 1.14 16 32 H 0.13 1.27 8.06 -2.39 -0.02 1.25 16 33 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.06 2.29 7.23 -2.39 -0.02 2.28 16 38 H 0.06 1.93 8.05 -2.38 -0.02 1.91 16 39 H 0.05 1.79 7.31 -2.39 -0.02 1.77 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H -0.01 -0.59 8.03 -2.38 -0.02 -0.61 16 42 H 0.05 2.46 6.33 -2.38 -0.02 2.45 16 43 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.04 1.83 7.99 -2.38 -0.02 1.82 16 45 H 0.03 1.26 8.06 -2.38 -0.02 1.24 16 46 H 0.06 2.19 7.62 -2.39 -0.02 2.17 16 47 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -73.19 370.26 4.23 -68.95 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.95 Total: 14.73 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 6.84 Total: 8.37 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -5.53 Total: -117.15 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.75 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -73.19 4.23 -68.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948300085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.292 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds