Wall clock time and date at job start Tue Mar 31 2020 11:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99701 * 2 1 4 4 C 1.46899 * 111.00602 * 123.95084 * 2 1 3 5 5 C 1.50694 * 109.47569 * 170.00062 * 4 2 1 6 6 C 1.38357 * 119.85115 * 90.00124 * 5 4 2 7 7 C 1.37963 * 120.14387 * 179.97438 * 6 5 4 8 8 C 1.39571 * 119.85368 * 359.97438 * 7 6 5 9 9 C 1.47842 * 120.14670 * 179.97438 * 8 7 6 10 10 O 1.21554 * 119.99678 * 44.60781 * 9 8 7 11 11 N 1.34780 * 120.00348 * 224.61037 * 9 8 7 12 12 C 1.46964 * 120.59451 * 186.16968 * 11 9 8 13 13 C 1.53366 * 108.63448 * 235.20309 * 12 11 9 14 14 N 1.46962 * 108.63673 * 310.57668 * 13 12 11 15 15 C 1.36929 * 120.59757 * 235.20567 * 14 13 12 16 16 H 1.07998 * 120.00777 * 148.18805 * 15 14 13 17 17 C 1.38818 * 119.99869 * 327.91055 * 15 14 13 18 18 N 1.31619 * 119.99867 * 349.47761 * 17 15 14 19 19 Si 1.86796 * 120.00209 * 169.47379 * 17 15 14 20 20 H 1.48499 * 109.47316 * 60.00070 * 19 17 15 21 21 H 1.48496 * 109.47289 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47249 * 300.00131 * 19 17 15 23 23 C 1.46968 * 118.81204 * 55.47840 * 14 13 12 24 24 C 1.46955 * 120.59196 * 6.14556 * 11 9 8 25 25 C 1.39584 * 119.71034 * 0.24973 * 8 7 6 26 26 C 1.37949 * 119.85070 * 359.51563 * 25 8 7 27 27 H 1.08995 * 109.46924 * 296.04273 * 1 2 3 28 28 H 1.08997 * 109.47086 * 56.04995 * 1 2 3 29 29 H 1.09003 * 109.46800 * 176.04893 * 1 2 3 30 30 H 1.08998 * 109.47014 * 183.95284 * 3 2 1 31 31 H 1.08997 * 109.47091 * 303.95561 * 3 2 1 32 32 H 1.09000 * 109.47045 * 63.95588 * 3 2 1 33 33 H 1.09003 * 109.46626 * 50.00279 * 4 2 1 34 34 H 1.09001 * 109.47328 * 290.00638 * 4 2 1 35 35 H 1.07993 * 119.93119 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.07023 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.61097 * 115.45754 * 12 11 9 38 38 H 1.09001 * 109.61145 * 354.94747 * 12 11 9 39 39 H 1.08998 * 109.61156 * 190.82833 * 13 12 11 40 40 H 1.09008 * 109.75165 * 70.40205 * 13 12 11 41 41 H 0.96995 * 120.00216 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.61059 * 64.26686 * 23 14 13 43 43 H 1.09003 * 109.61214 * 184.78480 * 23 14 13 44 44 H 1.09007 * 109.61119 * 244.54123 * 24 11 9 45 45 H 1.09000 * 109.61264 * 4.88169 * 24 11 9 46 46 H 1.08000 * 120.07156 * 179.72274 * 25 8 7 47 47 H 1.08005 * 119.92821 * 180.23451 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9728 6 6 4.3556 -0.0156 1.4956 7 6 5.7174 -0.1806 1.3488 8 6 6.2131 -1.2958 0.6716 9 6 7.6712 -1.4787 0.5099 10 8 8.4154 -1.2912 1.4526 11 7 8.1754 -1.8534 -0.6826 12 6 9.6035 -2.1697 -0.8248 13 6 10.1904 -1.2957 -1.9400 14 7 9.3217 -1.3956 -3.1212 15 6 9.8339 -1.7762 -4.3328 16 1 9.2209 -2.3302 -5.0283 17 6 11.1392 -1.4450 -4.6695 18 7 11.8156 -0.5958 -3.9253 19 14 11.9360 -2.2047 -6.1786 20 1 11.1515 -1.8445 -7.3869 21 1 13.3228 -1.6921 -6.3172 22 1 11.9674 -3.6820 -6.0311 23 6 7.8947 -1.0738 -2.9803 24 6 7.3068 -1.9533 -1.8637 25 6 5.3260 -2.2346 0.1425 26 6 3.9667 -2.0602 0.3006 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0827 1.3433 -0.0708 31 1 1.5897 1.9163 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5091 -1.7406 1.1756 34 1 1.7976 -0.2247 2.0628 35 1 3.9708 0.8467 2.0198 36 1 6.3984 0.5512 1.7577 37 1 9.7211 -3.2218 -1.0844 38 1 10.1194 -1.9618 0.1126 39 1 11.1913 -1.6464 -2.1913 40 1 10.2388 -0.2584 -1.6082 41 1 12.7278 -0.3647 -4.1603 42 1 7.7810 -0.0217 -2.7191 43 1 7.3791 -1.2781 -3.9187 44 1 7.2608 -2.9900 -2.1973 45 1 6.3050 -1.6054 -1.6116 46 1 5.7031 -3.0974 -0.3865 47 1 3.2793 -2.7879 -0.1050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951758083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:14 Heat of formation + Delta-G solvation = 34.331485 kcal Electronic energy + Delta-G solvation = -26751.235100 eV Core-core repulsion = 23128.096856 eV Total energy + Delta-G solvation = -3623.138244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.31171 -38.92252 -37.14521 -36.64223 -33.93637 -32.13721 -31.20401 -31.09038 -30.07194 -27.87826 -27.60394 -26.59561 -24.00518 -23.29533 -22.75727 -22.41222 -21.40748 -20.40057 -18.95764 -17.40614 -16.38845 -16.19206 -15.96999 -15.79232 -15.43635 -14.96739 -14.82757 -14.52842 -14.28716 -14.18840 -13.63405 -13.58694 -13.29118 -13.21515 -13.02944 -12.77669 -12.67361 -12.40202 -12.28104 -11.99851 -11.85564 -11.62647 -11.40951 -11.15024 -11.07830 -10.82562 -10.70907 -10.57655 -10.21033 -9.99824 -9.86960 -9.46461 -8.97996 -8.87790 -8.60564 -8.56342 -8.22561 -6.64065 -5.82840 -3.34281 0.93081 1.32839 2.96655 3.35318 3.37496 3.41307 3.42230 3.64222 3.95552 4.43893 4.48243 4.63939 4.77314 4.85549 4.90063 5.00554 5.03742 5.16360 5.25625 5.29454 5.33475 5.35292 5.39625 5.51610 5.52964 5.71169 5.74678 5.77414 5.81547 5.93123 5.95128 6.10537 6.22815 6.34950 6.37531 6.41182 6.42596 6.54317 6.63852 6.68462 6.73700 6.82627 6.91488 7.28916 7.59729 7.72757 7.90361 8.40780 8.53711 9.14684 9.75212 10.34236 11.24057 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.002954 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.421801 B = 9475.953236 C =10287.175678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.018 3.982 4 C 0.092 3.908 5 C -0.067 4.067 6 C -0.120 4.120 7 C -0.070 4.070 8 C -0.114 4.114 9 C 0.550 3.450 10 O -0.551 6.551 11 N -0.588 5.588 12 C 0.086 3.914 13 C 0.160 3.840 14 N -0.591 5.591 15 C -0.258 4.258 16 H 0.066 0.934 17 C 0.006 3.994 18 N -0.903 5.903 19 Si 0.907 3.093 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.132 3.868 24 C 0.083 3.917 25 C -0.087 4.087 26 C -0.104 4.104 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.023 0.977 41 H 0.256 0.744 42 H 0.023 0.977 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.130 0.870 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.965 -0.391 9.546 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.130 4.130 4 C -0.035 4.035 5 C -0.068 4.068 6 C -0.138 4.138 7 C -0.089 4.089 8 C -0.117 4.117 9 C 0.337 3.663 10 O -0.430 6.430 11 N -0.319 5.319 12 C -0.037 4.037 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.388 4.388 16 H 0.083 0.917 17 C -0.193 4.193 18 N -0.547 5.547 19 Si 0.737 3.263 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.004 3.996 24 C -0.042 4.042 25 C -0.105 4.105 26 C -0.123 4.123 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.148 0.852 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.217 -0.459 9.533 22.356 hybrid contribution 0.193 0.126 -0.151 0.276 sum -20.024 -0.333 9.382 22.115 Atomic orbital electron populations 1.22398 0.87070 1.02359 1.00561 1.61980 1.07678 1.14300 1.42534 1.22505 1.01881 0.88259 1.00327 1.21092 0.91557 0.99025 0.91797 1.19797 0.94605 0.94801 0.97570 1.20942 0.92785 0.99092 1.01027 1.21132 0.95233 0.96438 0.96100 1.20010 0.93435 0.97199 1.01050 1.18392 0.87468 0.77424 0.82967 1.90737 1.60190 1.52152 1.39957 1.47997 1.10577 1.65320 1.08049 1.22564 0.79410 1.00197 1.01551 1.21189 0.95984 0.95610 0.83892 1.43966 1.02640 1.78609 1.06184 1.19138 0.97058 1.28675 0.93927 0.91662 1.25226 0.98917 0.97070 0.98096 1.69947 1.11158 1.33836 1.39758 0.86306 0.78403 0.78900 0.82712 1.20798 1.21568 1.20894 1.21376 0.87429 0.95255 0.95519 1.22711 0.93433 1.01286 0.86773 1.21370 0.92957 0.98723 0.97491 1.20897 0.94841 0.97801 0.98761 0.95716 0.91157 0.91264 0.90529 0.91302 0.95689 0.89760 0.93831 0.85979 0.85299 0.92039 0.90107 0.88139 0.95846 0.93348 0.95888 0.91467 0.91620 0.90134 0.85170 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.06 0.57 0.73 16 2 N -0.54 -4.65 5.01 -252.73 -1.27 -5.92 16 3 C 0.02 0.15 9.13 60.07 0.55 0.70 16 4 C 0.09 0.75 5.11 -4.98 -0.03 0.73 16 5 C -0.07 -0.68 4.89 -104.54 -0.51 -1.19 16 6 C -0.12 -1.29 7.94 -39.64 -0.31 -1.60 16 7 C -0.07 -0.94 9.69 -39.19 -0.38 -1.32 16 8 C -0.11 -1.70 4.98 -104.97 -0.52 -2.22 16 9 C 0.55 10.23 7.27 -12.33 -0.09 10.14 16 10 O -0.55 -11.94 16.40 5.32 0.09 -11.85 16 11 N -0.59 -11.08 2.95 -173.33 -0.51 -11.59 16 12 C 0.09 1.77 6.60 -3.60 -0.02 1.74 16 13 C 0.16 3.86 5.45 -3.60 -0.02 3.84 16 14 N -0.59 -14.60 2.95 -171.76 -0.51 -15.11 16 15 C -0.26 -6.90 9.57 -15.06 -0.14 -7.05 16 16 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 17 C 0.01 0.16 5.05 -17.43 -0.09 0.08 16 18 N -0.90 -25.92 11.06 55.49 0.61 -25.31 16 19 Si 0.91 21.29 29.57 -169.99 -5.03 16.26 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.13 2.69 6.70 -3.36 -0.02 2.67 16 24 C 0.08 1.40 5.27 -3.37 -0.02 1.38 16 25 C -0.09 -1.08 7.43 -39.19 -0.29 -1.37 16 26 C -0.10 -1.11 9.68 -39.64 -0.38 -1.49 16 27 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.08 0.72 6.16 -51.93 -0.32 0.40 16 31 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.60 8.00 -51.93 -0.42 0.18 16 34 H 0.04 0.33 8.06 -51.93 -0.42 -0.09 16 35 H 0.12 1.06 8.02 -52.49 -0.42 0.64 16 36 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.67 6.99 -51.93 -0.36 1.30 16 39 H 0.10 2.67 6.06 -51.93 -0.31 2.35 16 40 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 44 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 45 H 0.08 1.18 4.88 -51.93 -0.25 0.93 16 46 H 0.13 1.53 7.00 -52.49 -0.37 1.16 16 47 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -31.63 372.19 -10.19 -41.82 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.48 Total: 0.32 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -1.71 Total: 5.76 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -1.67 Total: -57.92 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.63 -10.19 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951758083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.149 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds