Wall clock time and date at job start Tue Mar 31 2020 11:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99701 * 2 1 4 4 C 1.46899 * 111.00602 * 123.95084 * 2 1 3 5 5 C 1.50694 * 109.47569 * 170.00062 * 4 2 1 6 6 C 1.38357 * 119.85115 * 90.00124 * 5 4 2 7 7 C 1.37963 * 120.14387 * 179.97438 * 6 5 4 8 8 C 1.39571 * 119.85368 * 359.97438 * 7 6 5 9 9 C 1.47842 * 120.14670 * 179.97438 * 8 7 6 10 10 O 1.21554 * 119.99678 * 44.60781 * 9 8 7 11 11 N 1.34780 * 120.00348 * 224.61037 * 9 8 7 12 12 C 1.46964 * 120.59451 * 186.16968 * 11 9 8 13 13 C 1.53366 * 108.63448 * 235.20309 * 12 11 9 14 14 N 1.46962 * 108.63673 * 310.57668 * 13 12 11 15 15 C 1.36929 * 120.59757 * 235.20567 * 14 13 12 16 16 H 1.07998 * 120.00777 * 148.18805 * 15 14 13 17 17 C 1.38818 * 119.99869 * 327.91055 * 15 14 13 18 18 N 1.31619 * 119.99867 * 349.47761 * 17 15 14 19 19 Si 1.86796 * 120.00209 * 169.47379 * 17 15 14 20 20 H 1.48499 * 109.47316 * 60.00070 * 19 17 15 21 21 H 1.48496 * 109.47289 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47249 * 300.00131 * 19 17 15 23 23 C 1.46968 * 118.81204 * 55.47840 * 14 13 12 24 24 C 1.46955 * 120.59196 * 6.14556 * 11 9 8 25 25 C 1.39584 * 119.71034 * 0.24973 * 8 7 6 26 26 C 1.37949 * 119.85070 * 359.51563 * 25 8 7 27 27 H 1.08995 * 109.46924 * 296.04273 * 1 2 3 28 28 H 1.08997 * 109.47086 * 56.04995 * 1 2 3 29 29 H 1.09003 * 109.46800 * 176.04893 * 1 2 3 30 30 H 1.08998 * 109.47014 * 183.95284 * 3 2 1 31 31 H 1.08997 * 109.47091 * 303.95561 * 3 2 1 32 32 H 1.09000 * 109.47045 * 63.95588 * 3 2 1 33 33 H 1.09003 * 109.46626 * 50.00279 * 4 2 1 34 34 H 1.09001 * 109.47328 * 290.00638 * 4 2 1 35 35 H 1.07993 * 119.93119 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.07023 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.61097 * 115.45754 * 12 11 9 38 38 H 1.09001 * 109.61145 * 354.94747 * 12 11 9 39 39 H 1.08998 * 109.61156 * 190.82833 * 13 12 11 40 40 H 1.09008 * 109.75165 * 70.40205 * 13 12 11 41 41 H 0.96995 * 120.00216 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.61059 * 64.26686 * 23 14 13 43 43 H 1.09003 * 109.61214 * 184.78480 * 23 14 13 44 44 H 1.09007 * 109.61119 * 244.54123 * 24 11 9 45 45 H 1.09000 * 109.61264 * 4.88169 * 24 11 9 46 46 H 1.08000 * 120.07156 * 179.72274 * 25 8 7 47 47 H 1.08005 * 119.92821 * 180.23451 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9728 6 6 4.3556 -0.0156 1.4956 7 6 5.7174 -0.1806 1.3488 8 6 6.2131 -1.2958 0.6716 9 6 7.6712 -1.4787 0.5099 10 8 8.4154 -1.2912 1.4526 11 7 8.1754 -1.8534 -0.6826 12 6 9.6035 -2.1697 -0.8248 13 6 10.1904 -1.2957 -1.9400 14 7 9.3217 -1.3956 -3.1212 15 6 9.8339 -1.7762 -4.3328 16 1 9.2209 -2.3302 -5.0283 17 6 11.1392 -1.4450 -4.6695 18 7 11.8156 -0.5958 -3.9253 19 14 11.9360 -2.2047 -6.1786 20 1 11.1515 -1.8445 -7.3869 21 1 13.3228 -1.6921 -6.3172 22 1 11.9674 -3.6820 -6.0311 23 6 7.8947 -1.0738 -2.9803 24 6 7.3068 -1.9533 -1.8637 25 6 5.3260 -2.2346 0.1425 26 6 3.9667 -2.0602 0.3006 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0827 1.3433 -0.0708 31 1 1.5897 1.9163 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5091 -1.7406 1.1756 34 1 1.7976 -0.2247 2.0628 35 1 3.9708 0.8467 2.0198 36 1 6.3984 0.5512 1.7577 37 1 9.7211 -3.2218 -1.0844 38 1 10.1194 -1.9618 0.1126 39 1 11.1913 -1.6464 -2.1913 40 1 10.2388 -0.2584 -1.6082 41 1 12.7278 -0.3647 -4.1603 42 1 7.7810 -0.0217 -2.7191 43 1 7.3791 -1.2781 -3.9187 44 1 7.2608 -2.9900 -2.1973 45 1 6.3050 -1.6054 -1.6116 46 1 5.7031 -3.0974 -0.3865 47 1 3.2793 -2.7879 -0.1050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951758083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:14 Heat of formation + Delta-G solvation = 14.661571 kcal Electronic energy + Delta-G solvation = -26752.088052 eV Core-core repulsion = 23128.096856 eV Total energy + Delta-G solvation = -3623.991196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55942 -40.00841 -38.47033 -37.76388 -35.70512 -33.32345 -32.93749 -32.13679 -31.57528 -28.98711 -28.42700 -27.85256 -25.65371 -24.70084 -23.91056 -23.52563 -22.45906 -21.67010 -20.47638 -18.99567 -17.97672 -17.42354 -16.86546 -16.76678 -16.65121 -16.36321 -16.06501 -15.56137 -15.48141 -15.44841 -15.21422 -15.05505 -14.96743 -14.40819 -14.19582 -14.05669 -13.59458 -13.30444 -13.18399 -13.10583 -12.96236 -12.67058 -12.60794 -12.50862 -12.44180 -12.31716 -12.21370 -12.03829 -11.92803 -11.92115 -11.70355 -10.94273 -10.61426 -9.95143 -9.85942 -9.74992 -9.23563 -8.62673 -7.87978 -5.43819 -0.06294 0.42429 1.48973 1.50952 1.57788 1.63158 1.99490 2.50280 2.69298 3.26295 3.27993 3.44597 3.58596 3.81489 3.85896 4.00287 4.20910 4.23194 4.26505 4.33740 4.37610 4.44513 4.49375 4.50182 4.60463 4.62779 4.64558 4.76515 4.77281 4.79932 4.83891 4.91142 5.02926 5.07934 5.09628 5.10000 5.20854 5.31661 5.39261 5.44863 5.57242 5.60534 5.66402 5.92113 6.07253 6.13092 6.36910 6.42738 7.05698 7.09746 7.76427 8.32402 9.16775 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.002954 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.421801 B = 9475.953236 C =10287.175678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.556 5.556 3 C 0.018 3.982 4 C 0.094 3.906 5 C -0.058 4.058 6 C -0.113 4.113 7 C -0.084 4.084 8 C -0.139 4.139 9 C 0.548 3.452 10 O -0.591 6.591 11 N -0.593 5.593 12 C 0.101 3.899 13 C 0.172 3.828 14 N -0.608 5.608 15 C -0.265 4.265 16 H 0.076 0.924 17 C -0.050 4.050 18 N -0.940 5.940 19 Si 0.975 3.025 20 H -0.273 1.273 21 H -0.298 1.298 22 H -0.274 1.274 23 C 0.127 3.873 24 C 0.097 3.903 25 C -0.087 4.087 26 C -0.099 4.099 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.073 0.927 40 H -0.012 1.012 41 H 0.251 0.749 42 H 0.008 0.992 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.139 0.861 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.543 -1.695 9.178 26.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.130 4.130 4 C -0.033 4.033 5 C -0.058 4.058 6 C -0.132 4.132 7 C -0.103 4.103 8 C -0.142 4.142 9 C 0.339 3.661 10 O -0.473 6.473 11 N -0.324 5.324 12 C -0.023 4.023 13 C 0.045 3.955 14 N -0.331 5.331 15 C -0.395 4.395 16 H 0.094 0.906 17 C -0.245 4.245 18 N -0.585 5.585 19 Si 0.802 3.198 20 H -0.199 1.199 21 H -0.224 1.224 22 H -0.200 1.200 23 C 0.001 3.999 24 C -0.027 4.027 25 C -0.105 4.105 26 C -0.117 4.117 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.161 0.839 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.007 0.993 41 H 0.060 0.940 42 H 0.026 0.974 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.128 0.872 46 H 0.157 0.843 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -23.855 -1.774 9.157 25.614 hybrid contribution 1.170 0.602 0.003 1.315 sum -22.685 -1.172 9.160 24.493 Atomic orbital electron populations 1.22433 0.85737 1.03121 1.01028 1.61975 1.08959 1.14314 1.42754 1.22485 1.00970 0.88567 1.00986 1.21139 0.89913 1.00122 0.92173 1.20131 0.95887 0.93960 0.95869 1.21131 0.91563 0.99883 1.00583 1.21161 0.96440 0.96131 0.96547 1.19791 0.91134 0.99285 1.04017 1.19026 0.89097 0.75922 0.82073 1.90702 1.61722 1.53706 1.41170 1.48054 1.09836 1.65486 1.09023 1.22185 0.80814 0.99747 0.99597 1.20868 0.95326 0.94141 0.85166 1.44211 1.04278 1.78897 1.05752 1.19545 0.97351 1.28123 0.94505 0.90630 1.26033 0.99674 0.97771 1.01026 1.70134 1.11100 1.35643 1.41629 0.85242 0.76857 0.78226 0.79474 1.19858 1.22408 1.19999 1.21559 0.85386 0.95250 0.97721 1.22678 0.93908 1.01462 0.84629 1.21458 0.93471 0.98256 0.97348 1.21201 0.94266 0.98259 0.97950 0.95039 0.90952 0.90346 0.91947 0.91039 0.94783 0.88099 0.92861 0.83924 0.86497 0.90936 0.90755 0.90895 0.99340 0.93993 0.97369 0.89961 0.89923 0.87245 0.84321 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 127.69 1.22 1.46 16 2 N -0.56 -7.64 5.01 -953.49 -4.78 -12.42 16 3 C 0.02 0.25 9.13 127.69 1.17 1.42 16 4 C 0.09 1.15 5.11 85.56 0.44 1.59 16 5 C -0.06 -0.98 4.89 -19.81 -0.10 -1.07 16 6 C -0.11 -2.19 7.94 22.23 0.18 -2.01 16 7 C -0.08 -2.19 9.69 22.53 0.22 -1.98 16 8 C -0.14 -4.04 4.98 -20.09 -0.10 -4.14 16 9 C 0.55 20.65 7.27 86.78 0.63 21.28 16 10 O -0.59 -26.52 16.40 -3.88 -0.06 -26.59 16 11 N -0.59 -22.35 2.95 -820.57 -2.42 -24.77 16 12 C 0.10 4.25 6.60 86.41 0.57 4.82 16 13 C 0.17 8.70 5.45 86.41 0.47 9.17 16 14 N -0.61 -30.44 2.95 -697.34 -2.06 -32.49 16 15 C -0.27 -14.20 9.57 84.04 0.80 -13.40 16 16 H 0.08 3.82 7.85 -2.91 -0.02 3.80 16 17 C -0.05 -2.74 5.05 84.86 0.43 -2.31 16 18 N -0.94 -55.85 11.06 21.65 0.24 -55.61 16 19 Si 0.97 44.09 29.57 68.60 2.03 46.12 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 C 0.13 5.13 6.70 86.57 0.58 5.71 16 24 C 0.10 3.12 5.27 86.57 0.46 3.57 16 25 C -0.09 -1.94 7.43 22.53 0.17 -1.78 16 26 C -0.10 -1.72 9.68 22.23 0.22 -1.50 16 27 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.07 0.66 8.12 -2.39 -0.02 0.65 16 29 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 30 H 0.06 1.04 6.16 -2.39 -0.01 1.02 16 31 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 32 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.10 0.95 8.00 -2.39 -0.02 0.93 16 34 H 0.05 0.58 8.06 -2.39 -0.02 0.56 16 35 H 0.14 2.12 8.02 -2.91 -0.02 2.10 16 36 H 0.12 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.07 3.22 6.99 -2.39 -0.02 3.20 16 39 H 0.07 4.08 6.06 -2.39 -0.01 4.07 16 40 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 41 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.08 3.04 7.93 -2.39 -0.02 3.03 16 44 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.11 2.94 4.88 -2.39 -0.01 2.93 16 46 H 0.14 2.83 7.00 -2.91 -0.02 2.81 16 47 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -70.56 372.19 1.25 -69.31 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.95 Total: 15.63 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 7.35 Total: 20.82 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -9.01 Total: -125.29 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.06 Total: -26.59 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.56 1.25 -69.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951758083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.973 kcal (2) G-P(sol) polarization free energy of solvation -70.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds