Wall clock time and date at job start Tue Mar 31 2020 11:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46910 * 110.99584 * 2 1 4 4 C 1.46904 * 111.00098 * 123.95013 * 2 1 3 5 5 C 1.50693 * 109.46666 * 66.05198 * 4 2 1 6 6 C 1.38352 * 119.85724 * 90.00082 * 5 4 2 7 7 C 1.37966 * 120.15007 * 179.97438 * 6 5 4 8 8 C 1.39571 * 119.84713 * 359.97438 * 7 6 5 9 9 C 1.47845 * 120.14279 * 179.97438 * 8 7 6 10 10 O 1.21554 * 120.00122 * 7.26351 * 9 8 7 11 11 N 1.34779 * 120.00225 * 187.27175 * 9 8 7 12 12 C 1.47022 * 125.64586 * 354.40907 * 11 9 8 13 13 C 1.54376 * 107.28738 * 181.05377 * 12 11 9 14 14 C 1.55161 * 102.91824 * 22.13888 * 13 12 11 15 15 H 1.08998 * 111.00316 * 82.63915 * 14 13 12 16 16 N 1.46499 * 110.99908 * 206.45160 * 14 13 12 17 17 C 1.36945 * 119.99612 * 201.81942 * 16 14 13 18 18 H 1.08004 * 119.99918 * 359.97438 * 17 16 14 19 19 C 1.38812 * 119.99904 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99874 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 119.99842 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47037 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.47354 * 299.99711 * 21 19 17 24 24 H 1.48502 * 109.47341 * 60.00014 * 21 19 17 25 25 C 1.47426 * 125.64783 * 174.36175 * 11 9 8 26 26 C 1.39574 * 119.71491 * 0.25020 * 8 7 6 27 27 C 1.37961 * 119.85424 * 359.52026 * 26 8 7 28 28 H 1.08991 * 109.47753 * 296.04483 * 1 2 3 29 29 H 1.08999 * 109.47160 * 56.05177 * 1 2 3 30 30 H 1.09002 * 109.47133 * 176.04170 * 1 2 3 31 31 H 1.09000 * 109.46723 * 183.95103 * 3 2 1 32 32 H 1.09001 * 109.47254 * 303.94907 * 3 2 1 33 33 H 1.08995 * 109.47003 * 63.95391 * 3 2 1 34 34 H 1.08995 * 109.46999 * 306.05168 * 4 2 1 35 35 H 1.08998 * 109.46567 * 186.04953 * 4 2 1 36 36 H 1.07999 * 119.92999 * 359.97438 * 6 5 4 37 37 H 1.07997 * 120.07477 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.88474 * 300.43913 * 12 11 9 39 39 H 1.09007 * 109.88160 * 61.45380 * 12 11 9 40 40 H 1.08995 * 110.70643 * 263.79391 * 13 12 11 41 41 H 1.08997 * 110.75488 * 140.50317 * 13 12 11 42 42 H 0.96999 * 120.00642 * 21.82318 * 16 14 13 43 43 H 0.97002 * 120.00023 * 359.97438 * 20 19 17 44 44 H 1.08998 * 110.36634 * 37.07638 * 25 11 9 45 45 H 1.09003 * 110.45989 * 274.79362 * 25 11 9 46 46 H 1.08009 * 120.07512 * 179.72611 * 26 8 7 47 47 H 1.07997 * 119.93371 * 180.22953 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6370 -2.2203 0.9729 6 6 2.4970 -3.0696 0.2995 7 6 2.1751 -4.4023 0.1456 8 6 0.9791 -4.8933 0.6714 9 6 0.6273 -6.3202 0.5098 10 8 1.4351 -7.0954 0.0365 11 7 -0.5890 -6.7614 0.8870 12 6 -1.6142 -5.9637 1.5757 13 6 -2.8237 -6.8895 1.8271 14 6 -2.1936 -8.3063 1.7706 15 1 -1.7415 -8.5712 2.7264 16 7 -3.1853 -9.3062 1.3669 17 6 -2.9909 -10.6264 1.6746 18 1 -2.1062 -10.9304 2.2144 19 6 -3.9303 -11.5739 1.2916 20 7 -5.0076 -11.2035 0.6324 21 14 -3.6647 -13.3747 1.7106 22 1 -4.8036 -14.1761 1.1948 23 1 -2.4032 -13.8475 1.0859 24 1 -3.5765 -13.5323 3.1846 25 6 -1.1123 -8.1235 0.6765 26 6 0.1138 -4.0302 1.3455 27 6 0.4498 -2.7007 1.4966 28 1 -0.3634 0.4512 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0827 1.3434 -0.0708 32 1 1.5897 1.9164 -0.8525 33 1 1.7042 1.8724 0.9233 34 1 1.5610 -0.3872 2.0628 35 1 3.0797 -0.6609 1.1756 36 1 3.4223 -2.6885 -0.1065 37 1 2.8470 -5.0641 -0.3806 38 1 -1.2237 -5.5988 2.5257 39 1 -1.9118 -5.1224 0.9497 40 1 -3.5712 -6.7684 1.0432 41 1 -3.2581 -6.6995 2.8085 42 1 -3.9796 -9.0332 0.8817 43 1 -5.1453 -10.2683 0.4145 44 1 -0.3175 -8.8588 0.8021 45 1 -1.5568 -8.2119 -0.3148 46 1 -0.8154 -4.4030 1.7509 47 1 -0.2170 -2.0325 2.0212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970270755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:45 Heat of formation + Delta-G solvation = 39.534731 kcal Electronic energy + Delta-G solvation = -26018.881107 eV Core-core repulsion = 22395.968492 eV Total energy + Delta-G solvation = -3622.912614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56595 -39.15158 -37.53283 -37.01546 -34.57335 -32.46502 -31.50845 -31.09104 -29.67107 -28.16408 -27.90494 -26.85690 -24.46389 -23.42070 -22.75803 -22.48623 -21.11161 -20.45424 -19.75904 -17.63516 -17.30789 -16.35474 -16.14645 -15.92712 -15.84307 -15.49024 -14.81126 -14.67456 -14.42648 -14.34303 -13.95104 -13.68749 -13.63342 -13.25424 -13.00993 -12.80910 -12.79185 -12.52366 -12.47118 -12.21529 -12.13247 -11.94543 -11.75255 -11.40530 -11.18366 -10.87773 -10.69801 -10.54770 -10.32972 -10.00675 -9.78239 -9.24882 -9.15444 -9.07547 -9.04093 -8.75004 -8.41924 -7.17623 -6.18261 -3.20731 0.69606 1.20494 2.81559 3.10504 3.50560 3.53764 3.54496 3.70888 3.87526 4.32993 4.48902 4.53368 4.60779 4.69417 4.75773 4.83118 4.87870 4.91443 5.04196 5.05246 5.12894 5.17451 5.21708 5.28420 5.35717 5.41629 5.42544 5.56140 5.57438 5.62967 5.68743 5.79510 5.81099 5.92559 6.08519 6.12078 6.19051 6.24267 6.29130 6.43179 6.51946 6.54102 6.56288 6.71217 6.76833 7.67701 7.74253 8.28914 8.67403 9.10540 9.97188 10.09653 11.29476 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031715 B = 0.002303 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.651310 B =12153.285503 C =12723.416321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.091 3.909 5 C -0.062 4.062 6 C -0.108 4.108 7 C -0.062 4.062 8 C -0.123 4.123 9 C 0.566 3.434 10 O -0.541 6.541 11 N -0.607 5.607 12 C 0.095 3.905 13 C -0.145 4.145 14 C 0.178 3.822 15 H 0.068 0.932 16 N -0.723 5.723 17 C -0.339 4.339 18 H 0.067 0.933 19 C -0.040 4.040 20 N -0.940 5.940 21 Si 1.080 2.920 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.082 3.918 26 C -0.125 4.125 27 C -0.123 4.123 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.370 0.630 43 H 0.255 0.745 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.162 0.838 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.616 26.205 2.411 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.036 4.036 5 C -0.063 4.063 6 C -0.127 4.127 7 C -0.081 4.081 8 C -0.127 4.127 9 C 0.355 3.645 10 O -0.420 6.420 11 N -0.341 5.341 12 C -0.028 4.028 13 C -0.184 4.184 14 C 0.065 3.935 15 H 0.086 0.914 16 N -0.364 5.364 17 C -0.470 4.470 18 H 0.085 0.915 19 C -0.238 4.238 20 N -0.584 5.584 21 Si 0.911 3.089 22 H -0.210 1.210 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.043 4.043 26 C -0.142 4.142 27 C -0.142 4.142 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.204 0.796 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.179 0.821 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.769 23.937 1.694 26.727 hybrid contribution 0.215 2.172 0.637 2.274 sum 11.984 26.109 2.331 28.823 Atomic orbital electron populations 1.22501 0.87041 1.03009 1.00424 1.61986 1.08438 1.13623 1.42522 1.22403 1.00856 0.88517 1.00635 1.21115 1.00658 0.89987 0.91877 1.19895 0.94619 0.94824 0.96936 1.20944 0.99986 0.92766 0.98985 1.21287 0.95071 0.95319 0.96435 1.19976 0.96736 0.93368 1.02591 1.18014 0.80656 0.87480 0.78315 1.90766 1.48385 1.56991 1.45858 1.48389 1.13876 1.14179 1.57622 1.22480 0.89057 0.94814 0.96407 1.23030 0.96429 0.96140 1.02819 1.21246 0.89423 0.87614 0.95201 0.91404 1.42309 1.22193 1.03886 1.67979 1.20065 1.07634 0.84272 1.35038 0.91467 1.25827 0.94169 1.04924 0.98919 1.70904 1.27641 1.18173 1.41684 0.83240 0.75470 0.74679 0.75552 1.20978 1.22082 1.22139 1.23416 0.98312 0.81156 1.01416 1.22785 1.00814 0.93469 0.97165 1.21013 0.96572 0.95531 1.01059 0.95555 0.91325 0.90646 0.91233 0.91146 0.95601 0.93683 0.89702 0.85442 0.84727 0.90677 0.90797 0.90456 0.89951 0.79583 0.93364 0.90746 0.91476 0.82094 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.13 60.06 0.55 0.68 16 2 N -0.54 -4.13 5.01 -252.73 -1.27 -5.39 16 3 C 0.02 0.13 9.57 60.07 0.57 0.71 16 4 C 0.09 0.66 5.11 -4.98 -0.03 0.63 16 5 C -0.06 -0.57 4.89 -104.54 -0.51 -1.08 16 6 C -0.11 -1.09 9.68 -39.64 -0.38 -1.47 16 7 C -0.06 -0.77 9.59 -39.18 -0.38 -1.15 16 8 C -0.12 -1.68 5.87 -104.97 -0.62 -2.29 16 9 C 0.57 9.68 7.81 -12.33 -0.10 9.59 16 10 O -0.54 -11.21 16.60 5.32 0.09 -11.12 16 11 N -0.61 -9.86 3.33 -175.70 -0.58 -10.44 16 12 C 0.10 1.18 4.87 -3.04 -0.01 1.16 16 13 C -0.15 -2.08 6.59 -24.87 -0.16 -2.24 16 14 C 0.18 3.40 3.70 -65.78 -0.24 3.16 16 15 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 16 N -0.72 -17.36 5.26 -51.34 -0.27 -17.63 16 17 C -0.34 -9.33 9.97 -15.06 -0.15 -9.48 16 18 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 19 C -0.04 -1.15 5.50 -17.43 -0.10 -1.25 16 20 N -0.94 -28.47 13.70 55.49 0.76 -27.71 16 21 Si 1.08 25.69 29.92 -169.99 -5.09 20.60 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.08 1.57 6.63 -2.53 -0.02 1.56 16 26 C -0.12 -1.35 8.61 -39.18 -0.34 -1.69 16 27 C -0.12 -1.12 7.94 -39.64 -0.31 -1.44 16 28 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.07 0.60 6.17 -51.93 -0.32 0.28 16 31 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.05 0.30 8.06 -51.93 -0.42 -0.12 16 35 H 0.08 0.54 8.00 -51.93 -0.42 0.12 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.13 1.71 7.67 -52.49 -0.40 1.31 16 38 H 0.08 0.78 6.74 -51.93 -0.35 0.43 16 39 H 0.07 0.77 6.73 -51.93 -0.35 0.42 16 40 H 0.08 1.11 8.00 -51.93 -0.42 0.70 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.37 9.07 6.57 -40.82 -0.27 8.80 16 43 H 0.26 7.55 6.77 -40.82 -0.28 7.27 16 44 H 0.07 1.58 7.99 -51.93 -0.41 1.16 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 46 H 0.16 1.52 2.74 -57.81 -0.16 1.36 16 47 H 0.12 0.86 8.03 -52.49 -0.42 0.43 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -33.54 375.00 -10.15 -43.68 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.22 Total: 6.96 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.22 Total: -4.61 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -1.36 Total: -61.18 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.60 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.54 -10.15 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970270755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.218 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds