Wall clock time and date at job start Tue Mar 31 2020 11:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46910 * 110.99584 * 2 1 4 4 C 1.46904 * 111.00098 * 123.95013 * 2 1 3 5 5 C 1.50693 * 109.46666 * 66.05198 * 4 2 1 6 6 C 1.38352 * 119.85724 * 90.00082 * 5 4 2 7 7 C 1.37966 * 120.15007 * 179.97438 * 6 5 4 8 8 C 1.39571 * 119.84713 * 359.97438 * 7 6 5 9 9 C 1.47845 * 120.14279 * 179.97438 * 8 7 6 10 10 O 1.21554 * 120.00122 * 7.26351 * 9 8 7 11 11 N 1.34779 * 120.00225 * 187.27175 * 9 8 7 12 12 C 1.47022 * 125.64586 * 354.40907 * 11 9 8 13 13 C 1.54376 * 107.28738 * 181.05377 * 12 11 9 14 14 C 1.55161 * 102.91824 * 22.13888 * 13 12 11 15 15 H 1.08998 * 111.00316 * 82.63915 * 14 13 12 16 16 N 1.46499 * 110.99908 * 206.45160 * 14 13 12 17 17 C 1.36945 * 119.99612 * 201.81942 * 16 14 13 18 18 H 1.08004 * 119.99918 * 359.97438 * 17 16 14 19 19 C 1.38812 * 119.99904 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99874 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 119.99842 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47037 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.47354 * 299.99711 * 21 19 17 24 24 H 1.48502 * 109.47341 * 60.00014 * 21 19 17 25 25 C 1.47426 * 125.64783 * 174.36175 * 11 9 8 26 26 C 1.39574 * 119.71491 * 0.25020 * 8 7 6 27 27 C 1.37961 * 119.85424 * 359.52026 * 26 8 7 28 28 H 1.08991 * 109.47753 * 296.04483 * 1 2 3 29 29 H 1.08999 * 109.47160 * 56.05177 * 1 2 3 30 30 H 1.09002 * 109.47133 * 176.04170 * 1 2 3 31 31 H 1.09000 * 109.46723 * 183.95103 * 3 2 1 32 32 H 1.09001 * 109.47254 * 303.94907 * 3 2 1 33 33 H 1.08995 * 109.47003 * 63.95391 * 3 2 1 34 34 H 1.08995 * 109.46999 * 306.05168 * 4 2 1 35 35 H 1.08998 * 109.46567 * 186.04953 * 4 2 1 36 36 H 1.07999 * 119.92999 * 359.97438 * 6 5 4 37 37 H 1.07997 * 120.07477 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.88474 * 300.43913 * 12 11 9 39 39 H 1.09007 * 109.88160 * 61.45380 * 12 11 9 40 40 H 1.08995 * 110.70643 * 263.79391 * 13 12 11 41 41 H 1.08997 * 110.75488 * 140.50317 * 13 12 11 42 42 H 0.96999 * 120.00642 * 21.82318 * 16 14 13 43 43 H 0.97002 * 120.00023 * 359.97438 * 20 19 17 44 44 H 1.08998 * 110.36634 * 37.07638 * 25 11 9 45 45 H 1.09003 * 110.45989 * 274.79362 * 25 11 9 46 46 H 1.08009 * 120.07512 * 179.72611 * 26 8 7 47 47 H 1.07997 * 119.93371 * 180.22953 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6370 -2.2203 0.9729 6 6 2.4970 -3.0696 0.2995 7 6 2.1751 -4.4023 0.1456 8 6 0.9791 -4.8933 0.6714 9 6 0.6273 -6.3202 0.5098 10 8 1.4351 -7.0954 0.0365 11 7 -0.5890 -6.7614 0.8870 12 6 -1.6142 -5.9637 1.5757 13 6 -2.8237 -6.8895 1.8271 14 6 -2.1936 -8.3063 1.7706 15 1 -1.7415 -8.5712 2.7264 16 7 -3.1853 -9.3062 1.3669 17 6 -2.9909 -10.6264 1.6746 18 1 -2.1062 -10.9304 2.2144 19 6 -3.9303 -11.5739 1.2916 20 7 -5.0076 -11.2035 0.6324 21 14 -3.6647 -13.3747 1.7106 22 1 -4.8036 -14.1761 1.1948 23 1 -2.4032 -13.8475 1.0859 24 1 -3.5765 -13.5323 3.1846 25 6 -1.1123 -8.1235 0.6765 26 6 0.1138 -4.0302 1.3455 27 6 0.4498 -2.7007 1.4966 28 1 -0.3634 0.4512 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0827 1.3434 -0.0708 32 1 1.5897 1.9164 -0.8525 33 1 1.7042 1.8724 0.9233 34 1 1.5610 -0.3872 2.0628 35 1 3.0797 -0.6609 1.1756 36 1 3.4223 -2.6885 -0.1065 37 1 2.8470 -5.0641 -0.3806 38 1 -1.2237 -5.5988 2.5257 39 1 -1.9118 -5.1224 0.9497 40 1 -3.5712 -6.7684 1.0432 41 1 -3.2581 -6.6995 2.8085 42 1 -3.9796 -9.0332 0.8817 43 1 -5.1453 -10.2683 0.4145 44 1 -0.3175 -8.8588 0.8021 45 1 -1.5568 -8.2119 -0.3148 46 1 -0.8154 -4.4030 1.7509 47 1 -0.2170 -2.0325 2.0212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970270755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:44 Heat of formation + Delta-G solvation = 16.720756 kcal Electronic energy + Delta-G solvation = -26019.870395 eV Core-core repulsion = 22395.968492 eV Total energy + Delta-G solvation = -3623.901903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69778 -40.08954 -38.83610 -37.79132 -36.39308 -33.79108 -32.68563 -32.05884 -31.14200 -29.36930 -28.42154 -27.88809 -25.94587 -24.95997 -23.63528 -23.39796 -21.90824 -21.84937 -20.98071 -19.58232 -18.54300 -17.54872 -17.15794 -16.85948 -16.56638 -16.40879 -16.26021 -15.83845 -15.58142 -15.42879 -15.25543 -14.99132 -14.69119 -14.43878 -14.31962 -13.94845 -13.80597 -13.42880 -13.21338 -13.12155 -12.95310 -12.75829 -12.67592 -12.60676 -12.43876 -12.37289 -12.16332 -11.90588 -11.83506 -11.61274 -11.23556 -11.13249 -10.96340 -10.03045 -9.91788 -9.72750 -9.26529 -9.20617 -8.42842 -5.39159 -0.22410 0.40307 1.57927 1.66911 1.70269 1.81053 1.84029 2.68308 2.72974 3.24089 3.28968 3.40575 3.43889 3.73443 3.81441 3.82387 3.94117 4.02226 4.09623 4.20573 4.22983 4.31871 4.37001 4.42629 4.47711 4.48725 4.59221 4.62630 4.71064 4.75878 4.78490 4.85097 4.85326 5.02591 5.06185 5.07214 5.07779 5.10004 5.23212 5.28208 5.39619 5.53676 5.57455 5.88996 6.04986 6.09638 6.40089 6.47370 6.96653 7.03600 7.92720 8.02098 9.08713 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031715 B = 0.002303 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.651310 B =12153.285503 C =12723.416321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.560 5.560 3 C 0.024 3.976 4 C 0.092 3.908 5 C -0.053 4.053 6 C -0.108 4.108 7 C -0.078 4.078 8 C -0.147 4.147 9 C 0.559 3.441 10 O -0.593 6.593 11 N -0.607 5.607 12 C 0.095 3.905 13 C -0.131 4.131 14 C 0.170 3.830 15 H 0.062 0.938 16 N -0.734 5.734 17 C -0.338 4.338 18 H 0.064 0.936 19 C -0.098 4.098 20 N -0.971 5.971 21 Si 1.125 2.875 22 H -0.291 1.291 23 H -0.283 1.283 24 H -0.275 1.275 25 C 0.092 3.908 26 C -0.119 4.119 27 C -0.116 4.116 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.144 0.856 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.366 0.634 43 H 0.247 0.753 44 H 0.042 0.958 45 H 0.047 0.953 46 H 0.178 0.822 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.727 29.505 4.058 32.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.284 5.284 3 C -0.123 4.123 4 C -0.035 4.035 5 C -0.054 4.054 6 C -0.126 4.126 7 C -0.097 4.097 8 C -0.150 4.150 9 C 0.351 3.649 10 O -0.476 6.476 11 N -0.340 5.340 12 C -0.026 4.026 13 C -0.170 4.170 14 C 0.060 3.940 15 H 0.080 0.920 16 N -0.375 5.375 17 C -0.469 4.469 18 H 0.082 0.918 19 C -0.290 4.290 20 N -0.618 5.618 21 Si 0.950 3.050 22 H -0.217 1.217 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.034 4.034 26 C -0.136 4.136 27 C -0.134 4.134 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.162 0.838 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.199 0.801 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.194 0.806 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.897 27.310 3.372 29.979 hybrid contribution 0.274 1.301 0.110 1.334 sum 12.171 28.611 3.483 31.287 Atomic orbital electron populations 1.22499 0.86855 1.02511 1.01163 1.61969 1.08824 1.14769 1.42807 1.22428 1.01176 0.87566 1.01150 1.21146 1.01480 0.88441 0.92426 1.20224 0.94108 0.95863 0.95228 1.21122 1.00923 0.91705 0.98888 1.21290 0.94898 0.96379 0.97120 1.19769 0.98356 0.91400 1.05496 1.18706 0.80100 0.88859 0.77228 1.90724 1.49959 1.58634 1.48274 1.48406 1.14565 1.13216 1.57765 1.22814 0.87121 0.94495 0.98155 1.22971 0.97044 0.92528 1.04412 1.21401 0.88872 0.89536 0.94237 0.91982 1.42421 1.23065 1.03800 1.68194 1.20354 1.06951 0.86013 1.33602 0.91790 1.27145 0.94036 1.08695 0.99132 1.70999 1.29069 1.17774 1.43932 0.82659 0.75373 0.70527 0.76468 1.21692 1.20992 1.20039 1.22982 0.97278 0.82721 1.00437 1.22896 1.00639 0.93761 0.96297 1.21340 0.96763 0.95043 1.00265 0.94408 0.91151 0.91618 0.90694 0.90913 0.94826 0.92268 0.88719 0.83774 0.86357 0.87465 0.87731 0.90376 0.87432 0.80085 0.94276 0.93918 0.93420 0.80576 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.13 127.69 1.17 1.36 16 2 N -0.56 -6.69 5.01 -953.48 -4.78 -11.47 16 3 C 0.02 0.20 9.57 127.69 1.22 1.42 16 4 C 0.09 0.98 5.11 85.55 0.44 1.42 16 5 C -0.05 -0.80 4.89 -19.81 -0.10 -0.90 16 6 C -0.11 -1.98 9.68 22.23 0.22 -1.76 16 7 C -0.08 -1.93 9.59 22.53 0.22 -1.71 16 8 C -0.15 -3.89 5.87 -20.09 -0.12 -4.01 16 9 C 0.56 19.59 7.81 86.79 0.68 20.27 16 10 O -0.59 -26.12 16.60 -3.88 -0.06 -26.19 16 11 N -0.61 -19.65 3.33 -828.07 -2.75 -22.41 16 12 C 0.10 2.08 4.87 86.75 0.42 2.50 16 13 C -0.13 -3.46 6.59 31.80 0.21 -3.25 16 14 C 0.17 6.54 3.70 46.39 0.17 6.71 16 15 H 0.06 2.46 8.11 -2.39 -0.02 2.44 16 16 N -0.73 -35.91 5.26 -316.35 -1.66 -37.58 16 17 C -0.34 -18.89 9.97 84.03 0.84 -18.05 16 18 H 0.06 3.55 7.83 -2.91 -0.02 3.52 16 19 C -0.10 -5.68 5.50 84.86 0.47 -5.21 16 20 N -0.97 -59.95 13.70 21.65 0.30 -59.66 16 21 Si 1.12 52.23 29.92 68.60 2.05 54.29 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 C 0.09 3.68 6.63 86.86 0.58 4.25 16 26 C -0.12 -2.20 8.61 22.53 0.19 -2.00 16 27 C -0.12 -1.64 7.94 22.23 0.18 -1.47 16 28 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 30 H 0.07 0.83 6.17 -2.39 -0.01 0.81 16 31 H 0.07 0.52 8.12 -2.39 -0.02 0.51 16 32 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 33 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.06 0.50 8.06 -2.39 -0.02 0.48 16 35 H 0.09 0.85 8.00 -2.39 -0.02 0.83 16 36 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.12 3.22 7.67 -2.91 -0.02 3.20 16 38 H 0.11 1.74 6.74 -2.39 -0.02 1.73 16 39 H 0.10 1.75 6.73 -2.38 -0.02 1.73 16 40 H 0.08 2.09 8.00 -2.39 -0.02 2.07 16 41 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.37 18.34 6.57 -92.71 -0.61 17.73 16 43 H 0.25 15.02 6.77 -92.71 -0.63 14.39 16 44 H 0.04 1.93 7.99 -2.39 -0.02 1.91 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.18 2.57 2.74 -7.91 -0.02 2.54 16 47 H 0.15 1.29 8.03 -2.91 -0.02 1.26 16 Total: -1.00 -76.38 375.00 0.36 -76.03 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.49 Total: 27.42 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 6.77 Total: -0.43 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -8.90 Total: -131.11 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.06 Total: -26.19 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 2.05 Total: 54.29 kcal Total: -76.38 0.36 -76.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970270755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.748 kcal (2) G-P(sol) polarization free energy of solvation -76.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds