Wall clock time and date at job start Tue Mar 31 2020 11:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46899 * 111.00038 * 2 1 4 4 C 1.46905 * 111.00244 * 123.95310 * 2 1 3 5 5 C 1.50700 * 109.46905 * 66.04155 * 4 2 1 6 6 C 1.37973 * 120.07917 * 260.00303 * 5 4 2 7 7 C 1.38334 * 120.14946 * 180.02562 * 6 5 4 8 8 C 1.38386 * 120.28791 * 359.97438 * 7 6 5 9 9 C 1.37935 * 120.15040 * 0.02562 * 8 7 6 10 10 C 1.39558 * 120.06803 * 80.03090 * 5 4 2 11 11 C 1.47850 * 120.14857 * 359.97438 * 10 5 4 12 12 O 1.21550 * 119.99654 * 311.12317 * 11 10 5 13 13 N 1.34774 * 119.99961 * 131.11573 * 11 10 5 14 14 C 1.47021 * 125.64786 * 4.90030 * 13 11 10 15 15 C 1.54329 * 107.26940 * 181.01770 * 14 13 11 16 16 C 1.55157 * 102.94074 * 22.19177 * 15 14 13 17 17 H 1.08996 * 111.00298 * 82.57327 * 16 15 14 18 18 N 1.46499 * 111.00094 * 206.42304 * 16 15 14 19 19 C 1.36933 * 119.99943 * 205.00184 * 18 16 15 20 20 H 1.08000 * 120.00329 * 359.97438 * 19 18 16 21 21 C 1.38817 * 120.00319 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99557 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00457 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47284 * 89.99546 * 23 21 19 25 25 H 1.48497 * 109.47294 * 210.00119 * 23 21 19 26 26 H 1.48507 * 109.47191 * 329.99918 * 23 21 19 27 27 C 1.47426 * 125.64742 * 184.58406 * 13 11 10 28 28 H 1.08995 * 109.47388 * 296.04634 * 1 2 3 29 29 H 1.09004 * 109.47295 * 56.04608 * 1 2 3 30 30 H 1.09000 * 109.47472 * 176.04605 * 1 2 3 31 31 H 1.09001 * 109.47131 * 183.94996 * 3 2 1 32 32 H 1.09002 * 109.46972 * 303.95166 * 3 2 1 33 33 H 1.09002 * 109.47070 * 63.95366 * 3 2 1 34 34 H 1.09001 * 109.46537 * 306.05077 * 4 2 1 35 35 H 1.08997 * 109.47263 * 186.05094 * 4 2 1 36 36 H 1.08003 * 119.92490 * 359.75192 * 6 5 4 37 37 H 1.08000 * 119.85732 * 179.97438 * 7 6 5 38 38 H 1.08005 * 119.92759 * 179.97438 * 8 7 6 39 39 H 1.07990 * 120.07663 * 179.97438 * 9 8 7 40 40 H 1.09005 * 109.88297 * 300.43193 * 14 13 11 41 41 H 1.09000 * 109.88448 * 61.59852 * 14 13 11 42 42 H 1.09001 * 110.71659 * 140.55525 * 15 14 13 43 43 H 1.09000 * 110.71939 * 263.64826 * 15 14 13 44 44 H 0.96999 * 120.00310 * 25.00040 * 18 16 15 45 45 H 0.97001 * 120.00088 * 180.02562 * 22 21 19 46 46 H 1.09000 * 110.36806 * 274.75303 * 27 13 11 47 47 H 1.08994 * 110.36413 * 37.07466 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6368 -2.2204 0.9729 6 6 0.5654 -2.7507 1.6617 7 6 0.2352 -4.0857 1.5120 8 6 0.9758 -4.8978 0.6711 9 6 2.0494 -4.3803 -0.0233 10 6 2.3882 -3.0340 0.1237 11 6 3.5377 -2.4725 -0.6175 12 8 3.4118 -1.4360 -1.2397 13 7 4.7251 -3.1100 -0.6031 14 6 4.9893 -4.4153 0.0197 15 6 6.4854 -4.7295 -0.1920 16 6 7.1050 -3.3267 -0.4277 17 1 7.3028 -2.8230 0.5185 18 7 8.3238 -3.4200 -1.2352 19 6 9.2827 -2.4468 -1.1425 20 1 9.1404 -1.6103 -0.4745 21 6 10.4373 -2.5349 -1.9081 22 7 10.6106 -3.5541 -2.7226 23 14 11.7451 -1.2071 -1.7822 24 1 12.7185 -1.5699 -0.7210 25 1 12.4526 -1.0843 -3.0820 26 1 11.1037 0.0888 -1.4434 27 6 5.9724 -2.6169 -1.2149 28 1 -0.3634 0.4512 0.9232 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0708 32 1 1.5897 1.9163 -0.8525 33 1 1.7043 1.8723 0.9233 34 1 1.5610 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 -0.0142 -2.1232 2.3226 37 1 -0.6042 -4.4960 2.0538 38 1 0.7131 -5.9394 0.5589 39 1 2.6267 -5.0152 -0.6789 40 1 4.7676 -4.3690 1.0860 41 1 4.3784 -5.1831 -0.4551 42 1 6.9112 -5.1949 0.6969 43 1 6.6257 -5.3676 -1.0645 44 1 8.4516 -4.1711 -1.8355 45 1 11.4176 -3.6159 -3.2573 46 1 6.0115 -2.8899 -2.2694 47 1 6.0503 -1.5359 -1.0989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970796297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:52 Heat of formation + Delta-G solvation = 26.100520 kcal Electronic energy + Delta-G solvation = -26964.980570 eV Core-core repulsion = 23341.485404 eV Total energy + Delta-G solvation = -3623.495166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42534 -38.74063 -37.09551 -36.90127 -34.10495 -31.90753 -31.89934 -30.92209 -29.54955 -27.66138 -27.52914 -26.83521 -24.54936 -23.34615 -22.62260 -22.17079 -21.14412 -20.10296 -19.17318 -17.52336 -16.97895 -16.35850 -16.07932 -15.63596 -15.48758 -15.40170 -14.70384 -14.63040 -14.37598 -13.98264 -13.73080 -13.38041 -13.13359 -13.06338 -12.78575 -12.72911 -12.40443 -12.36195 -12.15864 -12.06323 -11.77022 -11.64027 -11.52625 -11.35776 -11.15447 -11.00652 -10.81542 -10.73658 -10.26280 -10.03181 -9.77898 -9.50033 -9.06721 -8.99824 -8.93340 -8.23162 -8.20781 -7.06553 -5.83061 -3.13501 0.93407 1.15516 2.97693 3.27168 3.41973 3.47736 3.49212 3.60747 4.12166 4.52739 4.55569 4.60099 4.68839 4.80668 5.00349 5.00858 5.12379 5.22823 5.24967 5.26003 5.33716 5.39607 5.39854 5.54355 5.57527 5.61272 5.67229 5.78248 5.78818 5.81259 5.85330 5.96368 5.98921 6.15995 6.16619 6.25910 6.29512 6.34178 6.42595 6.59438 6.66797 6.73908 6.91883 7.00785 7.05614 7.66349 7.88438 8.34541 8.52562 9.46583 10.00104 10.35016 11.39053 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.003250 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.296978 B = 8612.518598 C = 9880.955090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.518 5.518 3 C 0.033 3.967 4 C 0.097 3.903 5 C -0.037 4.037 6 C -0.120 4.120 7 C -0.107 4.107 8 C -0.124 4.124 9 C -0.094 4.094 10 C -0.092 4.092 11 C 0.559 3.441 12 O -0.502 6.502 13 N -0.613 5.613 14 C 0.104 3.896 15 C -0.142 4.142 16 C 0.173 3.827 17 H 0.067 0.933 18 N -0.711 5.711 19 C -0.247 4.247 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.085 3.915 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.017 0.983 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.066 0.934 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.624 -1.128 10.342 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.241 5.241 3 C -0.115 4.115 4 C -0.031 4.031 5 C -0.039 4.039 6 C -0.139 4.139 7 C -0.125 4.125 8 C -0.142 4.142 9 C -0.113 4.113 10 C -0.096 4.096 11 C 0.346 3.654 12 O -0.377 6.377 13 N -0.349 5.349 14 C -0.019 4.019 15 C -0.181 4.181 16 C 0.060 3.940 17 H 0.085 0.915 18 N -0.351 5.351 19 C -0.378 4.378 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.040 4.040 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.434 -0.570 9.576 24.399 hybrid contribution 0.431 0.683 0.505 0.953 sum -22.003 0.114 10.081 24.203 Atomic orbital electron populations 1.22426 0.88044 1.02137 0.99849 1.61847 1.06864 1.13487 1.41859 1.22308 1.01442 0.88139 0.99625 1.21000 1.00983 0.89530 0.91572 1.19718 0.94193 0.94922 0.95039 1.20967 0.96921 0.95641 1.00345 1.21218 0.99417 0.93678 0.98233 1.21083 0.95712 1.00042 0.97340 1.21408 0.97225 0.93836 0.98783 1.19860 0.97312 0.93849 0.98581 1.17956 0.81512 0.84276 0.81655 1.90874 1.82454 1.22466 1.41880 1.48518 1.09577 1.21001 1.55766 1.22092 0.97346 0.84990 0.97491 1.22958 0.92805 0.99620 1.02750 1.21353 0.86217 0.92299 0.94128 0.91501 1.42307 1.15953 1.27921 1.48902 1.19266 0.96805 1.01612 1.20152 0.90959 1.24765 0.98512 0.98218 0.99044 1.69658 1.28058 1.30780 1.29289 0.86174 0.81767 0.81221 0.76931 1.21623 1.21698 1.20613 1.23403 0.82323 1.00132 0.98118 0.96292 0.91575 0.91464 0.91004 0.91440 0.96420 0.94320 0.89865 0.85960 0.85866 0.85621 0.85250 0.91893 0.91979 0.90332 0.90527 0.77870 0.93356 0.91611 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.27 60.06 0.56 0.81 16 2 N -0.52 -6.81 3.71 -252.73 -0.94 -7.75 16 3 C 0.03 0.39 9.57 60.06 0.57 0.96 16 4 C 0.10 1.20 4.21 -4.97 -0.02 1.18 16 5 C -0.04 -0.46 4.60 -104.23 -0.48 -0.94 16 6 C -0.12 -1.15 8.72 -39.64 -0.35 -1.50 16 7 C -0.11 -0.91 10.04 -39.49 -0.40 -1.30 16 8 C -0.12 -1.11 10.03 -39.64 -0.40 -1.51 16 9 C -0.09 -1.05 8.53 -39.18 -0.33 -1.39 16 10 C -0.09 -1.25 5.39 -104.96 -0.57 -1.82 16 11 C 0.56 9.32 6.54 -12.33 -0.08 9.24 16 12 O -0.50 -9.94 15.12 5.32 0.08 -9.86 16 13 N -0.61 -9.92 3.32 -171.49 -0.57 -10.49 16 14 C 0.10 1.37 5.69 -3.06 -0.02 1.36 16 15 C -0.14 -2.14 6.59 -24.89 -0.16 -2.30 16 16 C 0.17 3.31 3.73 -65.67 -0.24 3.07 16 17 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 18 N -0.71 -17.22 5.24 -51.24 -0.27 -17.49 16 19 C -0.25 -6.71 9.96 -15.06 -0.15 -6.86 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.93 -27.55 13.06 55.49 0.72 -26.82 16 23 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 C 0.09 1.62 6.59 -2.41 -0.02 1.61 16 28 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.07 0.73 6.65 -51.93 -0.35 0.38 16 31 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 32 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 33 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.04 0.41 7.98 -51.93 -0.41 -0.01 16 35 H 0.08 1.18 7.27 -51.93 -0.38 0.80 16 36 H 0.12 0.93 8.03 -52.48 -0.42 0.51 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 39 H 0.13 1.34 6.09 -52.49 -0.32 1.02 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.70 6.06 -51.93 -0.31 0.39 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.17 8.01 -51.93 -0.42 0.75 16 44 H 0.39 9.89 7.77 -40.82 -0.32 9.57 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -31.90 377.64 -10.02 -41.92 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.54 Total: 7.41 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.18 Total: 0.26 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -1.05 Total: -62.54 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.90 -10.02 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970796297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.021 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds