Wall clock time and date at job start Tue Mar 31 2020 11:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46899 * 111.00038 * 2 1 4 4 C 1.46905 * 111.00244 * 123.95310 * 2 1 3 5 5 C 1.50700 * 109.46905 * 66.04155 * 4 2 1 6 6 C 1.37973 * 120.07917 * 260.00303 * 5 4 2 7 7 C 1.38334 * 120.14946 * 180.02562 * 6 5 4 8 8 C 1.38386 * 120.28791 * 359.97438 * 7 6 5 9 9 C 1.37935 * 120.15040 * 0.02562 * 8 7 6 10 10 C 1.39558 * 120.06803 * 80.03090 * 5 4 2 11 11 C 1.47850 * 120.14857 * 359.97438 * 10 5 4 12 12 O 1.21550 * 119.99654 * 311.12317 * 11 10 5 13 13 N 1.34774 * 119.99961 * 131.11573 * 11 10 5 14 14 C 1.47021 * 125.64786 * 4.90030 * 13 11 10 15 15 C 1.54329 * 107.26940 * 181.01770 * 14 13 11 16 16 C 1.55157 * 102.94074 * 22.19177 * 15 14 13 17 17 H 1.08996 * 111.00298 * 82.57327 * 16 15 14 18 18 N 1.46499 * 111.00094 * 206.42304 * 16 15 14 19 19 C 1.36933 * 119.99943 * 205.00184 * 18 16 15 20 20 H 1.08000 * 120.00329 * 359.97438 * 19 18 16 21 21 C 1.38817 * 120.00319 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99557 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00457 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47284 * 89.99546 * 23 21 19 25 25 H 1.48497 * 109.47294 * 210.00119 * 23 21 19 26 26 H 1.48507 * 109.47191 * 329.99918 * 23 21 19 27 27 C 1.47426 * 125.64742 * 184.58406 * 13 11 10 28 28 H 1.08995 * 109.47388 * 296.04634 * 1 2 3 29 29 H 1.09004 * 109.47295 * 56.04608 * 1 2 3 30 30 H 1.09000 * 109.47472 * 176.04605 * 1 2 3 31 31 H 1.09001 * 109.47131 * 183.94996 * 3 2 1 32 32 H 1.09002 * 109.46972 * 303.95166 * 3 2 1 33 33 H 1.09002 * 109.47070 * 63.95366 * 3 2 1 34 34 H 1.09001 * 109.46537 * 306.05077 * 4 2 1 35 35 H 1.08997 * 109.47263 * 186.05094 * 4 2 1 36 36 H 1.08003 * 119.92490 * 359.75192 * 6 5 4 37 37 H 1.08000 * 119.85732 * 179.97438 * 7 6 5 38 38 H 1.08005 * 119.92759 * 179.97438 * 8 7 6 39 39 H 1.07990 * 120.07663 * 179.97438 * 9 8 7 40 40 H 1.09005 * 109.88297 * 300.43193 * 14 13 11 41 41 H 1.09000 * 109.88448 * 61.59852 * 14 13 11 42 42 H 1.09001 * 110.71659 * 140.55525 * 15 14 13 43 43 H 1.09000 * 110.71939 * 263.64826 * 15 14 13 44 44 H 0.96999 * 120.00310 * 25.00040 * 18 16 15 45 45 H 0.97001 * 120.00088 * 180.02562 * 22 21 19 46 46 H 1.09000 * 110.36806 * 274.75303 * 27 13 11 47 47 H 1.08994 * 110.36413 * 37.07466 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6368 -2.2204 0.9729 6 6 0.5654 -2.7507 1.6617 7 6 0.2352 -4.0857 1.5120 8 6 0.9758 -4.8978 0.6711 9 6 2.0494 -4.3803 -0.0233 10 6 2.3882 -3.0340 0.1237 11 6 3.5377 -2.4725 -0.6175 12 8 3.4118 -1.4360 -1.2397 13 7 4.7251 -3.1100 -0.6031 14 6 4.9893 -4.4153 0.0197 15 6 6.4854 -4.7295 -0.1920 16 6 7.1050 -3.3267 -0.4277 17 1 7.3028 -2.8230 0.5185 18 7 8.3238 -3.4200 -1.2352 19 6 9.2827 -2.4468 -1.1425 20 1 9.1404 -1.6103 -0.4745 21 6 10.4373 -2.5349 -1.9081 22 7 10.6106 -3.5541 -2.7226 23 14 11.7451 -1.2071 -1.7822 24 1 12.7185 -1.5699 -0.7210 25 1 12.4526 -1.0843 -3.0820 26 1 11.1037 0.0888 -1.4434 27 6 5.9724 -2.6169 -1.2149 28 1 -0.3634 0.4512 0.9232 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0708 32 1 1.5897 1.9163 -0.8525 33 1 1.7043 1.8723 0.9233 34 1 1.5610 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 -0.0142 -2.1232 2.3226 37 1 -0.6042 -4.4960 2.0538 38 1 0.7131 -5.9394 0.5589 39 1 2.6267 -5.0152 -0.6789 40 1 4.7676 -4.3690 1.0860 41 1 4.3784 -5.1831 -0.4551 42 1 6.9112 -5.1949 0.6969 43 1 6.6257 -5.3676 -1.0645 44 1 8.4516 -4.1711 -1.8355 45 1 11.4176 -3.6159 -3.2573 46 1 6.0115 -2.8899 -2.2694 47 1 6.0503 -1.5359 -1.0989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970796297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:51 Heat of formation + Delta-G solvation = 5.747161 kcal Electronic energy + Delta-G solvation = -26965.863157 eV Core-core repulsion = 23341.485404 eV Total energy + Delta-G solvation = -3624.377753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50202 -39.86280 -38.35960 -37.91400 -35.92124 -33.46814 -32.72567 -32.11997 -31.01439 -29.07911 -28.46161 -27.80580 -26.10084 -24.82115 -23.52208 -23.26852 -22.13851 -21.59403 -20.30421 -19.35287 -18.29639 -17.48745 -17.06688 -16.80186 -16.66364 -16.39315 -16.19907 -15.64682 -15.48971 -15.35250 -14.93933 -14.80333 -14.68829 -14.28764 -13.91419 -13.69211 -13.64301 -13.36389 -13.26818 -13.11544 -13.03799 -12.88414 -12.66291 -12.57956 -12.50877 -12.42037 -12.26974 -12.10208 -11.89782 -11.79177 -11.55034 -11.02759 -10.76228 -9.85910 -9.77121 -9.55951 -9.11761 -9.07780 -7.98222 -5.28117 0.09157 0.40499 1.46799 1.48229 1.56567 1.79797 2.04287 2.54750 2.74603 3.25137 3.32509 3.52981 3.66973 3.74977 3.81957 3.99004 4.11743 4.14927 4.24192 4.26363 4.29292 4.36460 4.38672 4.49223 4.53578 4.55102 4.60246 4.70239 4.71098 4.74167 4.85389 4.90647 4.97824 4.99331 5.00694 5.08784 5.19538 5.26063 5.37088 5.43929 5.50470 5.54912 5.56537 5.98928 6.11052 6.19473 6.23605 6.61597 7.23928 7.30782 8.02021 8.26730 9.24569 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.003250 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.296978 B = 8612.518598 C = 9880.955090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.547 5.547 3 C 0.037 3.963 4 C 0.100 3.900 5 C -0.051 4.051 6 C -0.118 4.118 7 C -0.095 4.095 8 C -0.118 4.118 9 C -0.100 4.100 10 C -0.119 4.119 11 C 0.556 3.444 12 O -0.546 6.546 13 N -0.614 5.614 14 C 0.110 3.890 15 C -0.130 4.130 16 C 0.167 3.833 17 H 0.064 0.936 18 N -0.722 5.722 19 C -0.249 4.249 20 H 0.074 0.926 21 C -0.068 4.068 22 N -0.965 5.965 23 Si 0.971 3.029 24 H -0.283 1.283 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.098 3.902 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.378 0.622 45 H 0.253 0.747 46 H 0.044 0.956 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.368 -2.505 12.624 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.270 5.270 3 C -0.111 4.111 4 C -0.027 4.027 5 C -0.053 4.053 6 C -0.136 4.136 7 C -0.113 4.113 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.122 4.122 11 C 0.345 3.655 12 O -0.424 6.424 13 N -0.349 5.349 14 C -0.013 4.013 15 C -0.168 4.168 16 C 0.056 3.944 17 H 0.082 0.918 18 N -0.361 5.361 19 C -0.380 4.380 20 H 0.092 0.908 21 C -0.261 4.261 22 N -0.615 5.615 23 Si 0.800 3.200 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.199 1.199 27 C -0.028 4.028 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.163 0.837 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.152 0.848 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.211 0.789 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.222 -1.960 11.907 27.960 hybrid contribution 1.146 1.101 -0.161 1.597 sum -24.076 -0.859 11.746 26.803 Atomic orbital electron populations 1.22396 0.86431 1.02265 1.00832 1.61795 1.08501 1.13892 1.42851 1.22225 0.99829 0.88296 1.00733 1.20916 0.99208 0.90378 0.92199 1.19802 0.95248 0.94415 0.95789 1.21225 0.95892 0.96641 0.99834 1.21668 0.99575 0.92922 0.97158 1.21448 0.94388 1.01575 0.96156 1.21515 0.98292 0.92702 0.99290 1.19669 0.96980 0.95352 1.00212 1.18616 0.82163 0.83649 0.81065 1.90837 1.83293 1.24474 1.43747 1.48550 1.08583 1.22103 1.55671 1.22250 0.96216 0.83953 0.98843 1.22877 0.93691 0.96624 1.03634 1.21490 0.84599 0.95326 0.92947 0.91811 1.42421 1.17124 1.27067 1.49512 1.19607 0.97251 1.01902 1.19257 0.90836 1.25527 1.00755 1.00442 0.99395 1.69797 1.28522 1.32612 1.30533 0.85189 0.79256 0.79024 0.76579 1.20951 1.22175 1.19873 1.22931 0.84311 0.98478 0.97117 0.94434 0.91481 0.91577 0.93591 0.91063 0.94542 0.92371 0.93003 0.83717 0.82365 0.82569 0.84842 0.89763 0.89236 0.88296 0.90672 0.78914 0.93846 0.93798 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.27 127.69 1.18 1.75 16 2 N -0.55 -14.48 3.71 -953.49 -3.53 -18.01 16 3 C 0.04 0.91 9.57 127.69 1.22 2.13 16 4 C 0.10 2.48 4.21 85.56 0.36 2.84 16 5 C -0.05 -1.17 4.60 -19.61 -0.09 -1.26 16 6 C -0.12 -1.83 8.72 22.23 0.19 -1.63 16 7 C -0.10 -1.14 10.04 22.33 0.22 -0.92 16 8 C -0.12 -1.59 10.03 22.23 0.22 -1.37 16 9 C -0.10 -1.96 8.53 22.53 0.19 -1.77 16 10 C -0.12 -3.10 5.39 -20.09 -0.11 -3.21 16 11 C 0.56 19.04 6.54 86.79 0.57 19.61 16 12 O -0.55 -22.93 15.12 -3.87 -0.06 -22.99 16 13 N -0.61 -20.20 3.32 -814.75 -2.71 -22.91 16 14 C 0.11 2.69 5.69 86.73 0.49 3.18 16 15 C -0.13 -3.74 6.59 31.78 0.21 -3.53 16 16 C 0.17 6.55 3.73 46.46 0.17 6.72 16 17 H 0.06 2.54 8.09 -2.39 -0.02 2.52 16 18 N -0.72 -35.95 5.24 -316.03 -1.66 -37.60 16 19 C -0.25 -13.79 9.96 84.04 0.84 -12.95 16 20 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 22 N -0.96 -58.50 13.06 21.65 0.28 -58.22 16 23 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 27 C 0.10 3.92 6.59 86.93 0.57 4.49 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 30 H 0.07 1.31 6.65 -2.39 -0.02 1.29 16 31 H 0.05 1.32 8.12 -2.39 -0.02 1.30 16 32 H 0.07 1.62 8.12 -2.39 -0.02 1.61 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.15 7.98 -2.39 -0.02 1.13 16 35 H 0.05 1.56 7.27 -2.39 -0.02 1.55 16 36 H 0.15 1.57 8.03 -2.91 -0.02 1.54 16 37 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.13 2.41 6.09 -2.92 -0.02 2.39 16 40 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.09 1.77 6.06 -2.39 -0.01 1.75 16 42 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.07 2.22 8.01 -2.39 -0.02 2.20 16 44 H 0.38 19.93 7.77 -92.71 -0.72 19.21 16 45 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 46 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 47 H 0.04 1.88 8.08 -2.39 -0.02 1.86 16 Total: -1.00 -72.77 377.64 1.31 -71.46 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.24 Total: 29.27 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.72 Total: 10.65 kcal Atomic # 7 Polarization: -129.13 SS G_CDS: -7.62 Total: -136.75 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.06 Total: -22.99 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -72.77 1.31 -71.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970796297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.203 kcal (2) G-P(sol) polarization free energy of solvation -72.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds